Gene annotation
Transcriptome id Sobic.004G168300.1,Sobic.004G168300.2
Synonym Sb04g021970, E2F3, ATE2FA
Functional annotation E2F family transcription factor protein, putative, expressed
UniProt A0A1Z5RMV7 , A0A1Z5RMW7
Pfam PF02319 PF16421
Panther DB PTHR12081 PTHR12081:SF18
NCBI CDD KOG2577; Transcription factor E2F/dimerization partner (TDP)
KEGG Orthology K06620; transcription factor E2F3
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005667transcription regulator complex GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT2G36010 : E2F transcription factor 3
RAP-DB (Rice) LOC_Os02g33430.1,LOC_Os02g33430.2 : E2F family transcription factor protein, putative, expressed
MaizeGDB (Corn) Zm00025a031511 , Zm00025a020577
Brachypodium PNT68772 , PNT68770 , PNT68771 , KQJ99765 , KQJ99767 , KQJ99766 , KQJ99769 , KQJ99768
Barley HORVU0Hr1G038470.26 , HORVU0Hr1G038470.25 , HORVU0Hr1G038470.21 , HORVU0Hr1G038470.19 , HORVU0Hr1G038470.16 , HORVU0Hr1G038470.17 , HORVU0Hr1G038470.14 , HORVU0Hr1G038470.15 , HORVU0Hr1G038470.12 , HORVU0Hr1G038470.13 , HORVU0Hr1G038470.10 , HORVU0Hr1G038470.11 , HORVU0Hr1G038470.8 , HORVU0Hr1G038470.9 , HORVU0Hr1G038470.6 , HORVU0Hr1G038470.4 , HORVU0Hr1G038470.5 , HORVU0Hr1G038470.7 , HORVU0Hr1G038470.1 , HORVU0Hr1G038470.2 , HORVU0Hr1G038470.3 , HORVU0Hr1G038470.24 , HORVU0Hr1G038470.23 , HORVU0Hr1G038470.22 , HORVU0Hr1G038470.20
Wheat TraesCS6A02G195500 , TraesCS6B02G233700 , TraesCS6B02G233700 , TraesCS6D02G182600 , TraesCS6D02G182600 , TraesCS6A02G195500 , TraesCS6A02G195500 , TraesCS6A02G195500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G312400 dymeclin, putative, expressed -
2 Sobic.003G222700 similar to DEAD-box ATP-dependent RNA helicase 26(PubMedID : 29862293)@- K17679: ATP-dependent RNA helicase MSS116, mitochondrial
3 Sobic.001G462600 retinoblastoma-binding protein-like, putative, expressed K14961: RBBP5, SWD1, COMPASS component SWD1
4 Sobic.004G256300 RNA polymerase Rpb4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
5 Sobic.001G467100 SURF1, putative, expressed K14998: SURF1, surfeit locus 1 family protein
6 Sobic.002G277200 rRNA-processing protein FCF, putative, expressed K14773: U3 small nucleolar RNA-associated protein 23
7 Sobic.004G177600 DDT domain containing protein, putative, expressed -
8 Sobic.002G029300 pleckstrin homology domain-containing protein, putative, expressed -
9 Sobic.002G357900 expressed protein -
10 Sobic.002G142700 PPR repeat containing protein, putative, expressed -
11 Sobic.001G191900 mitochondrial carrier protein, putative, expressed K15109: SLC25A20_29, CACT, CACL, solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29
12 Sobic.001G506000 N-acetylglucosaminyltransferase, putative, expressed -
13 Sobic.006G029400 GDSL-like lipase/acylhydrolase, putative, expressed -
14 Sobic.002G194800 expressed protein -
15 Sobic.002G297600 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
16 Sobic.007G022700 proteasome subunit, putative, expressed K12177: COPS3, COP9 signalosome complex subunit 3
17 Sobic.007G051400 transmembrane 9 superfamily member, putative, expressed -
18 Sobic.006G212900 expressed protein K12606: RCD1, CNOT9, CCR4-NOT transcription complex subunit 9
19 Sobic.007G173700 WD domain, G-beta repeat domain containing protein, expressed -
20 Sobic.003G221500 CENP-C1, putative, expressed -


Gene co-expression network
sample Sobic004G168300 Sobic004G168300 Sobic003G312400 Sobic003G312400 Sobic004G168300--Sobic003G312400 Sobic003G222700 Sobic003G222700 Sobic004G168300--Sobic003G222700 Sobic001G462600 Sobic001G462600 Sobic004G168300--Sobic001G462600 Sobic004G256300 Sobic004G256300 Sobic004G168300--Sobic004G256300 Sobic001G467100 Sobic001G467100 Sobic004G168300--Sobic001G467100 Sobic002G277200 Sobic002G277200 Sobic004G168300--Sobic002G277200 Sobic004G177600 Sobic004G177600 Sobic004G168300--Sobic004G177600 Sobic002G029300 Sobic002G029300 Sobic004G168300--Sobic002G029300 Sobic002G357900 Sobic002G357900 Sobic004G168300--Sobic002G357900 Sobic003G252900 Sobic003G252900 Sobic003G312400--Sobic003G252900 Sobic003G410400 Sobic003G410400 Sobic003G312400--Sobic003G410400 Sobic003G319000 Sobic003G319000 Sobic003G312400--Sobic003G319000 Sobic003G312400--Sobic004G168300 Sobic003G092700 Sobic003G092700 Sobic003G312400--Sobic003G092700 Sobic010G168900 Sobic010G168900 Sobic003G312400--Sobic010G168900 Sobic006G129000 Sobic006G129000 Sobic003G312400--Sobic006G129000 Sobic010G059700 Sobic010G059700 Sobic003G312400--Sobic010G059700 Sobic002G297600 Sobic002G297600 Sobic003G312400--Sobic002G297600 Sobic003G222700--Sobic004G256300 Sobic003G222700--Sobic001G467100 Sobic010G172400 Sobic010G172400 Sobic003G222700--Sobic010G172400 Sobic001G061200 Sobic001G061200 Sobic003G222700--Sobic001G061200 Sobic007G022700 Sobic007G022700 Sobic003G222700--Sobic007G022700 Sobic007G173700 Sobic007G173700 Sobic003G222700--Sobic007G173700 Sobic001G229300 Sobic001G229300 Sobic003G222700--Sobic001G229300 Sobic002G142700 Sobic002G142700 Sobic003G222700--Sobic002G142700 Sobic002G399900 Sobic002G399900 Sobic003G222700--Sobic002G399900 Sobic003G221500 Sobic003G221500 Sobic001G462600--Sobic003G221500 Sobic006G188500 Sobic006G188500 Sobic001G462600--Sobic006G188500 Sobic001G462600--Sobic002G142700 Sobic001G462600--Sobic004G256300 Sobic003G128300 Sobic003G128300 Sobic001G462600--Sobic003G128300 Sobic001G462600--Sobic004G177600 Sobic001G462600--Sobic003G222700 Sobic006G212900 Sobic006G212900 Sobic001G462600--Sobic006G212900 Sobic004G315500 Sobic004G315500 Sobic001G462600--Sobic004G315500 Sobic004G256300--Sobic003G221500 Sobic004G256300--Sobic003G222700 Sobic006G245700 Sobic006G245700 Sobic004G256300--Sobic006G245700 Sobic004G256300--Sobic007G022700 Sobic004G256300--Sobic001G229300 Sobic004G256300--Sobic002G142700 Sobic001G487100 Sobic001G487100 Sobic004G256300--Sobic001G487100 Sobic004G256300--Sobic001G467100 Sobic003G004600 Sobic003G004600 Sobic004G256300--Sobic003G004600 Sobic004G208500 Sobic004G208500 Sobic001G467100--Sobic004G208500 Sobic001G467100--Sobic010G172400 Sobic001G474400 Sobic001G474400 Sobic001G467100--Sobic001G474400 Sobic001G099900 Sobic001G099900 Sobic001G467100--Sobic001G099900 Sobic001G467100--Sobic003G222700 Sobic007G145400 Sobic007G145400 Sobic001G467100--Sobic007G145400 Sobic005G114500 Sobic005G114500 Sobic001G467100--Sobic005G114500 Sobic001G161700 Sobic001G161700 Sobic001G467100--Sobic001G161700 Sobic005G110499 Sobic005G110499 Sobic001G467100--Sobic005G110499 Sobic009G002000 Sobic009G002000 Sobic002G277200--Sobic009G002000 Sobic004G010700 Sobic004G010700 Sobic002G277200--Sobic004G010700 Sobic009G258500 Sobic009G258500 Sobic002G277200--Sobic009G258500 Sobic009G201800 Sobic009G201800 Sobic002G277200--Sobic009G201800 Sobic001G157600 Sobic001G157600 Sobic002G277200--Sobic001G157600 Sobic002G277200--Sobic003G410400 Sobic009G102900 Sobic009G102900 Sobic002G277200--Sobic009G102900 Sobic006G127500 Sobic006G127500 Sobic002G277200--Sobic006G127500 Sobic002G277200--Sobic002G142700 Sobic010G233000 Sobic010G233000 Sobic004G177600--Sobic010G233000 Sobic003G388000 Sobic003G388000 Sobic004G177600--Sobic003G388000 Sobic004G177600--Sobic003G221500 Sobic004G339700 Sobic004G339700 Sobic004G177600--Sobic004G339700 Sobic008G063600 Sobic008G063600 Sobic004G177600--Sobic008G063600 Sobic004G177600--Sobic004G256300 Sobic004G307900 Sobic004G307900 Sobic004G177600--Sobic004G307900 Sobic004G177600--Sobic001G462600 Sobic004G322300 Sobic004G322300 Sobic004G177600--Sobic004G322300 Sobic001G023100 Sobic001G023100 Sobic002G029300--Sobic001G023100 Sobic002G029300--Sobic007G173700 Sobic004G031800 Sobic004G031800 Sobic002G029300--Sobic004G031800 Sobic008G072200 Sobic008G072200 Sobic002G029300--Sobic008G072200 Sobic001G010700 Sobic001G010700 Sobic002G029300--Sobic001G010700 Sobic009G226400 Sobic009G226400 Sobic002G029300--Sobic009G226400 Sobic002G029300--Sobic001G161700 Sobic002G141700 Sobic002G141700 Sobic002G029300--Sobic002G141700 Sobic006G056200 Sobic006G056200 Sobic002G029300--Sobic006G056200 Sobic004G337300 Sobic004G337300 Sobic002G357900--Sobic004G337300 Sobic003G148900 Sobic003G148900 Sobic002G357900--Sobic003G148900 Sobic002G357900--Sobic003G222700 Sobic002G357900--Sobic001G061200 Sobic002G267400 Sobic002G267400 Sobic002G357900--Sobic002G267400 Sobic008G140400 Sobic008G140400 Sobic002G357900--Sobic008G140400 Sobic003G062400 Sobic003G062400 Sobic002G357900--Sobic003G062400 Sobic003G038600 Sobic003G038600 Sobic002G357900--Sobic003G038600 Sobic002G357900--Sobic002G029300
Octagon: transcription factors


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