Gene annotation
Transcriptome id Sobic.006G129900.1
Synonym Sb06g020970
Functional annotation ribosome recycling factor, putative, expressed
UniProt C5YBC4
Pfam PF01765
Panther DB PTHR20982
NCBI CDD KOG4759; Ribosome recycling factor
KEGG Orthology K02838; frr, MRRF, ribosome recycling factor
Gene Ontology GO:0006412; translation


Orthologs (automatic annotation)
TAIR AT3G01800 : Ribosome recycling factor
RAP-DB (Rice) LOC_Os04g41300.1 : ribosome recycling factor, putative, expressed
MaizeGDB (Corn) Zm00025a056360
Brachypodium KQJ83288 , KQJ83294 , KQJ83295 , KQJ83292 , KQJ83293 , KQJ83290 , KQJ83291 , PNT61352 , PNT61351
Barley HORVU2Hr1G084680.10 , HORVU2Hr1G084680.11 , HORVU2Hr1G084680.8 , HORVU2Hr1G084680.9 , HORVU2Hr1G084680.2 , HORVU2Hr1G084680.3 , HORVU2Hr1G084680.1 , HORVU2Hr1G084680.6 , HORVU2Hr1G084680.7 , HORVU2Hr1G084680.4 , HORVU2Hr1G084680.5
Wheat TraesCS2B02G366500 , TraesCS2D02G346400 , TraesCS2A02G348100
Populus -


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cDNA sequences
Sobic.006G129900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G047000 ubiquinol-cytochrome C reductase hinge protein, putative, expressed K00416: QCR6, ubiquinol-cytochrome c reductase subunit 6
2 Sobic.004G010700 expressed protein -
3 Sobic.005G178300 peptidyl-prolyl cis-trans isomerase, putative, expressed -
4 Sobic.010G258000 peptidyl-prolyl cis-trans isomerase, putative, expressed K01802: peptidylprolyl isomerase
5 Sobic.007G165300 SNARE domain containing protein, putative, expressed K08504: blocked early in transport 1
6 Sobic.004G015300 expressed protein K16587: HAUS augmin-like complex subunit 4
7 Sobic.003G248300 kinase, pfkB family, putative, expressed K00852: rbsK, ribokinase
8 Sobic.001G176900 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
9 Sobic.005G110526 - -
10 Sobic.006G120700 N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, putative, expressed K03434: N-acetylglucosaminylphosphatidylinositol deacetylase
11 Sobic.009G201800 MPPN domain containing protein, expressed K14313: NUP35, nuclear pore complex protein Nup53
12 Sobic.006G050500 methylisocitrate lyase 2, putative, expressed -
13 Sobic.001G347901 - -
14 Sobic.009G016500 expressed protein -
15 Sobic.009G102100 DUF538 domain containing protein, putative, expressed -
16 Sobic.010G134100 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
17 Sobic.003G351000 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
18 Sobic.002G317600 endoribonuclease, putative, expressed -
19 Sobic.003G008600 eukaryotic translation initiation factor 3 subunit E-interacting protein, putative, expressed K15029: translation initiation factor 3 subunit L
20 Sobic.010G002800 AGAP000326-PA, putative, expressed K18163: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 6


Gene co-expression network
sample Sobic006G129900 Sobic006G129900 Sobic005G047000 Sobic005G047000 Sobic006G129900--Sobic005G047000 Sobic004G010700 Sobic004G010700 Sobic006G129900--Sobic004G010700 Sobic005G178300 Sobic005G178300 Sobic006G129900--Sobic005G178300 Sobic010G258000 Sobic010G258000 Sobic006G129900--Sobic010G258000 Sobic007G165300 Sobic007G165300 Sobic006G129900--Sobic007G165300 Sobic004G015300 Sobic004G015300 Sobic006G129900--Sobic004G015300 Sobic003G248300 Sobic003G248300 Sobic006G129900--Sobic003G248300 Sobic001G176900 Sobic001G176900 Sobic006G129900--Sobic001G176900 Sobic005G110526 Sobic005G110526 Sobic006G129900--Sobic005G110526 Sobic009G119700 Sobic009G119700 Sobic005G047000--Sobic009G119700 Sobic005G047000--Sobic006G129900 Sobic007G044400 Sobic007G044400 Sobic005G047000--Sobic007G044400 Sobic005G047000--Sobic004G015300 Sobic001G347901 Sobic001G347901 Sobic005G047000--Sobic001G347901 Sobic007G176800 Sobic007G176800 Sobic005G047000--Sobic007G176800 Sobic009G151700 Sobic009G151700 Sobic005G047000--Sobic009G151700 Sobic005G047000--Sobic004G010700 Sobic009G189200 Sobic009G189200 Sobic005G047000--Sobic009G189200 Sobic009G201800 Sobic009G201800 Sobic004G010700--Sobic009G201800 Sobic009G258500 Sobic009G258500 Sobic004G010700--Sobic009G258500 Sobic002G054000 Sobic002G054000 Sobic004G010700--Sobic002G054000 Sobic002G101000 Sobic002G101000 Sobic004G010700--Sobic002G101000 Sobic002G277200 Sobic002G277200 Sobic004G010700--Sobic002G277200 Sobic004G010700--Sobic006G129900 Sobic001G382200 Sobic001G382200 Sobic004G010700--Sobic001G382200 Sobic009G234400 Sobic009G234400 Sobic004G010700--Sobic009G234400 Sobic009G104100 Sobic009G104100 Sobic004G010700--Sobic009G104100 Sobic006G050500 Sobic006G050500 Sobic005G178300--Sobic006G050500 Sobic002G199400 Sobic002G199400 Sobic005G178300--Sobic002G199400 Sobic003G085500 Sobic003G085500 Sobic005G178300--Sobic003G085500 Sobic010G002800 Sobic010G002800 Sobic005G178300--Sobic010G002800 Sobic005G178300--Sobic007G165300 Sobic006G259900 Sobic006G259900 Sobic005G178300--Sobic006G259900 Sobic003G388700 Sobic003G388700 Sobic005G178300--Sobic003G388700 Sobic005G112100 Sobic005G112100 Sobic005G178300--Sobic005G112100 Sobic005G178300--Sobic010G258000 Sobic001G473400 Sobic001G473400 Sobic010G258000--Sobic001G473400 Sobic006G203900 Sobic006G203900 Sobic010G258000--Sobic006G203900 Sobic001G035400 Sobic001G035400 Sobic010G258000--Sobic001G035400 Sobic001G073600 Sobic001G073600 Sobic010G258000--Sobic001G073600 Sobic010G258000--Sobic003G388700 Sobic009G016500 Sobic009G016500 Sobic010G258000--Sobic009G016500 Sobic003G170300 Sobic003G170300 Sobic010G258000--Sobic003G170300 Sobic008G136800 Sobic008G136800 Sobic010G258000--Sobic008G136800 Sobic007G119600 Sobic007G119600 Sobic010G258000--Sobic007G119600 Sobic004G184000 Sobic004G184000 Sobic007G165300--Sobic004G184000 Sobic007G217400 Sobic007G217400 Sobic007G165300--Sobic007G217400 Sobic009G207200 Sobic009G207200 Sobic007G165300--Sobic009G207200 Sobic007G165300--Sobic003G170300 Sobic003G028100 Sobic003G028100 Sobic007G165300--Sobic003G028100 Sobic001G506000 Sobic001G506000 Sobic007G165300--Sobic001G506000 Sobic007G165300--Sobic005G178300 Sobic007G165300--Sobic009G201800 Sobic007G165300--Sobic010G258000 Sobic001G296800 Sobic001G296800 Sobic004G015300--Sobic001G296800 Sobic006G122200 Sobic006G122200 Sobic004G015300--Sobic006G122200 Sobic009G212100 Sobic009G212100 Sobic004G015300--Sobic009G212100 Sobic004G315700 Sobic004G315700 Sobic004G015300--Sobic004G315700 Sobic004G015300--Sobic005G047000 Sobic001G487200 Sobic001G487200 Sobic004G015300--Sobic001G487200 Sobic006G245700 Sobic006G245700 Sobic004G015300--Sobic006G245700 Sobic007G084200 Sobic007G084200 Sobic004G015300--Sobic007G084200 Sobic001G115500 Sobic001G115500 Sobic004G015300--Sobic001G115500 Sobic003G248300--Sobic003G170300 Sobic002G317600 Sobic002G317600 Sobic003G248300--Sobic002G317600 Sobic003G286200 Sobic003G286200 Sobic003G248300--Sobic003G286200 Sobic003G248300--Sobic005G110526 Sobic003G248300--Sobic006G129900 Sobic003G248300--Sobic001G473400 Sobic006G038200 Sobic006G038200 Sobic003G248300--Sobic006G038200 Sobic007G043600 Sobic007G043600 Sobic003G248300--Sobic007G043600 Sobic003G248300--Sobic010G258000 Sobic010G134100 Sobic010G134100 Sobic001G176900--Sobic010G134100 Sobic004G356300 Sobic004G356300 Sobic001G176900--Sobic004G356300 Sobic001G413100 Sobic001G413100 Sobic001G176900--Sobic001G413100 Sobic001G167500 Sobic001G167500 Sobic001G176900--Sobic001G167500 Sobic002G367800 Sobic002G367800 Sobic001G176900--Sobic002G367800 Sobic001G176900--Sobic003G388700 Sobic001G176900--Sobic004G184000 Sobic004G007700 Sobic004G007700 Sobic001G176900--Sobic004G007700 Sobic003G075200 Sobic003G075200 Sobic001G176900--Sobic003G075200 Sobic001G188700 Sobic001G188700 Sobic005G110526--Sobic001G188700 Sobic001G110300 Sobic001G110300 Sobic005G110526--Sobic001G110300 Sobic001G434400 Sobic001G434400 Sobic005G110526--Sobic001G434400 Sobic008G107900 Sobic008G107900 Sobic005G110526--Sobic008G107900 Sobic001G129400 Sobic001G129400 Sobic005G110526--Sobic001G129400 Sobic010G194200 Sobic010G194200 Sobic005G110526--Sobic010G194200 Sobic005G110526--Sobic003G248300 Sobic005G110526--Sobic004G356300 Sobic005G110526--Sobic004G184000
Octagon: transcription factors


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