Gene annotation
Transcriptome id Sobic.009G102100.1
Synonym Sb09g016210
Functional annotation DUF538 domain containing protein, putative, expressed
UniProt C5YW96
Pfam PF04398
Panther DB PTHR31676 PTHR31676:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G08890 : Protein of unknown function, DUF538
RAP-DB (Rice) LOC_Os05g27950.1 : DUF538 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a043471
Brachypodium KQK14063
Barley -
Wheat TraesCS1D02G223700 , TraesCS1B02G235200 , TraesCS1A02G222000 , TraesCS1A02G222000
Populus -


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cDNA sequences
Sobic.009G102100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G047000 ubiquinol-cytochrome C reductase hinge protein, putative, expressed K00416: QCR6, ubiquinol-cytochrome c reductase subunit 6
2 Sobic.009G188300 universal stress protein domain containing protein, putative, expressed -
3 Sobic.006G013900 RNA polymerase subunit, putative, expressed K03008: RPB11, DNA-directed RNA polymerase II subunit RPB11
4 Sobic.009G115100 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed -
5 Sobic.004G137900 wiskott-Aldrich syndrome protein family member 2, putative, expressed -
6 Sobic.002G317600 endoribonuclease, putative, expressed -
7 Sobic.004G010700 expressed protein -
8 Sobic.004G015300 expressed protein K16587: HAUS augmin-like complex subunit 4
9 Sobic.009G258600 LSM domain containing protein, expressed K12627: U6 snRNA-associated Sm-like protein LSm8
10 Sobic.006G129900 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor
11 Sobic.001G139001 - -
12 Sobic.007G165300 SNARE domain containing protein, putative, expressed K08504: blocked early in transport 1
13 Sobic.004G242100 expressed protein -
14 Sobic.003G190800 GA18326-PA, putative, expressed -
15 Sobic.001G347901 - -
16 Sobic.001G544100 peptidyl-prolyl cis-trans isomerase, cyclophilin type, putative, expressed -
17 Sobic.003G028100 MPPN domain containing protein, expressed K14313: NUP35, nuclear pore complex protein Nup53
18 Sobic.009G201800 MPPN domain containing protein, expressed K14313: NUP35, nuclear pore complex protein Nup53
19 Sobic.008G115600 RNA polymerase Rpb7, N-terminal domain containing protein, expressed -
20 Sobic.006G079900 COP9 signalosome complex subunit 8, putative, expressed K12181: COPS8, COP9 signalosome complex subunit 8


Gene co-expression network
sample Sobic009G102100 Sobic009G102100 Sobic005G047000 Sobic005G047000 Sobic009G102100--Sobic005G047000 Sobic009G188300 Sobic009G188300 Sobic009G102100--Sobic009G188300 Sobic006G013900 Sobic006G013900 Sobic009G102100--Sobic006G013900 Sobic009G115100 Sobic009G115100 Sobic009G102100--Sobic009G115100 Sobic004G137900 Sobic004G137900 Sobic009G102100--Sobic004G137900 Sobic002G317600 Sobic002G317600 Sobic009G102100--Sobic002G317600 Sobic004G010700 Sobic004G010700 Sobic009G102100--Sobic004G010700 Sobic004G015300 Sobic004G015300 Sobic009G102100--Sobic004G015300 Sobic009G258600 Sobic009G258600 Sobic009G102100--Sobic009G258600 Sobic009G119700 Sobic009G119700 Sobic005G047000--Sobic009G119700 Sobic006G129900 Sobic006G129900 Sobic005G047000--Sobic006G129900 Sobic007G044400 Sobic007G044400 Sobic005G047000--Sobic007G044400 Sobic005G047000--Sobic004G015300 Sobic001G347901 Sobic001G347901 Sobic005G047000--Sobic001G347901 Sobic007G176800 Sobic007G176800 Sobic005G047000--Sobic007G176800 Sobic009G151700 Sobic009G151700 Sobic005G047000--Sobic009G151700 Sobic005G047000--Sobic004G010700 Sobic009G189200 Sobic009G189200 Sobic005G047000--Sobic009G189200 Sobic001G261549 Sobic001G261549 Sobic009G188300--Sobic001G261549 Sobic001G440900 Sobic001G440900 Sobic009G188300--Sobic001G440900 Sobic009G188300--Sobic009G102100 Sobic009G188300--Sobic006G013900 Sobic007G043600 Sobic007G043600 Sobic009G188300--Sobic007G043600 Sobic009G165500 Sobic009G165500 Sobic009G188300--Sobic009G165500 Sobic010G001800 Sobic010G001800 Sobic009G188300--Sobic010G001800 Sobic006G102900 Sobic006G102900 Sobic009G188300--Sobic006G102900 Sobic006G278100 Sobic006G278100 Sobic009G188300--Sobic006G278100 Sobic006G231700 Sobic006G231700 Sobic006G013900--Sobic006G231700 Sobic002G051200 Sobic002G051200 Sobic006G013900--Sobic002G051200 Sobic001G162800 Sobic001G162800 Sobic006G013900--Sobic001G162800 Sobic006G013900--Sobic004G137900 Sobic001G154400 Sobic001G154400 Sobic006G013900--Sobic001G154400 Sobic004G343600 Sobic004G343600 Sobic006G013900--Sobic004G343600 Sobic002G331300 Sobic002G331300 Sobic006G013900--Sobic002G331300 Sobic005G206700 Sobic005G206700 Sobic006G013900--Sobic005G206700 Sobic002G386300 Sobic002G386300 Sobic006G013900--Sobic002G386300 Sobic002G252000 Sobic002G252000 Sobic009G115100--Sobic002G252000 Sobic009G115100--Sobic001G347901 Sobic009G115100--Sobic006G278100 Sobic009G115100--Sobic009G102100 Sobic003G400800 Sobic003G400800 Sobic009G115100--Sobic003G400800 Sobic009G114400 Sobic009G114400 Sobic009G115100--Sobic009G114400 Sobic007G150800 Sobic007G150800 Sobic009G115100--Sobic007G150800 Sobic009G232200 Sobic009G232200 Sobic009G115100--Sobic009G232200 Sobic001G107100 Sobic001G107100 Sobic009G115100--Sobic001G107100 Sobic004G012800 Sobic004G012800 Sobic004G137900--Sobic004G012800 Sobic004G137900--Sobic006G231700 Sobic003G358300 Sobic003G358300 Sobic004G137900--Sobic003G358300 Sobic004G137900--Sobic006G013900 Sobic004G137900--Sobic002G331300 Sobic001G286300 Sobic001G286300 Sobic004G137900--Sobic001G286300 Sobic009G120100 Sobic009G120100 Sobic004G137900--Sobic009G120100 Sobic003G129800 Sobic003G129800 Sobic004G137900--Sobic003G129800 Sobic005G111100 Sobic005G111100 Sobic004G137900--Sobic005G111100 Sobic001G436300 Sobic001G436300 Sobic002G317600--Sobic001G436300 Sobic008G075200 Sobic008G075200 Sobic002G317600--Sobic008G075200 Sobic008G059900 Sobic008G059900 Sobic002G317600--Sobic008G059900 Sobic007G079600 Sobic007G079600 Sobic002G317600--Sobic007G079600 Sobic007G172600 Sobic007G172600 Sobic002G317600--Sobic007G172600 Sobic003G248300 Sobic003G248300 Sobic002G317600--Sobic003G248300 Sobic001G235700 Sobic001G235700 Sobic002G317600--Sobic001G235700 Sobic008G181400 Sobic008G181400 Sobic002G317600--Sobic008G181400 Sobic001G176900 Sobic001G176900 Sobic002G317600--Sobic001G176900 Sobic009G201800 Sobic009G201800 Sobic004G010700--Sobic009G201800 Sobic009G258500 Sobic009G258500 Sobic004G010700--Sobic009G258500 Sobic002G054000 Sobic002G054000 Sobic004G010700--Sobic002G054000 Sobic002G101000 Sobic002G101000 Sobic004G010700--Sobic002G101000 Sobic002G277200 Sobic002G277200 Sobic004G010700--Sobic002G277200 Sobic004G010700--Sobic006G129900 Sobic001G382200 Sobic001G382200 Sobic004G010700--Sobic001G382200 Sobic009G234400 Sobic009G234400 Sobic004G010700--Sobic009G234400 Sobic009G104100 Sobic009G104100 Sobic004G010700--Sobic009G104100 Sobic001G296800 Sobic001G296800 Sobic004G015300--Sobic001G296800 Sobic006G122200 Sobic006G122200 Sobic004G015300--Sobic006G122200 Sobic009G212100 Sobic009G212100 Sobic004G015300--Sobic009G212100 Sobic004G315700 Sobic004G315700 Sobic004G015300--Sobic004G315700 Sobic004G015300--Sobic005G047000 Sobic001G487200 Sobic001G487200 Sobic004G015300--Sobic001G487200 Sobic006G245700 Sobic006G245700 Sobic004G015300--Sobic006G245700 Sobic007G084200 Sobic007G084200 Sobic004G015300--Sobic007G084200 Sobic001G115500 Sobic001G115500 Sobic004G015300--Sobic001G115500 Sobic003G127700 Sobic003G127700 Sobic009G258600--Sobic003G127700 Sobic010G210000 Sobic010G210000 Sobic009G258600--Sobic010G210000 Sobic003G367900 Sobic003G367900 Sobic009G258600--Sobic003G367900 Sobic003G028100 Sobic003G028100 Sobic009G258600--Sobic003G028100 Sobic009G012700 Sobic009G012700 Sobic009G258600--Sobic009G012700 Sobic009G258600--Sobic004G137900 Sobic009G258600--Sobic002G331300 Sobic001G096100 Sobic001G096100 Sobic009G258600--Sobic001G096100 Sobic003G190800 Sobic003G190800 Sobic009G258600--Sobic003G190800
Octagon: transcription factors


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