Gene annotation
Transcriptome id Sobic.006G050500.2
Synonym Sb06g013750
Functional annotation methylisocitrate lyase 2, putative, expressed
UniProt A0A1Z5RCS5
Pfam PF00463
Panther DB PTHR21631 PTHR21631:SF21
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0004451; isocitrate lyase activity


Orthologs (automatic annotation)
TAIR AT2G43180 : Phosphoenolpyruvate carboxylase family protein
RAP-DB (Rice) LOC_Os04g31700.1 : methylisocitrate lyase 2, putative, expressed
MaizeGDB (Corn) Zm00025a011777 , Zm00025a015832 , Zm00025a056542
Brachypodium KQJ82262
Barley HORVU2Hr1G069600.3 , HORVU2Hr1G069600.2 , HORVU2Hr1G069600.1 , HORVU2Hr1G087400.1 , HORVU2Hr1G087400.3 , HORVU2Hr1G087400.2
Wheat TraesCS2B02G378300 , TraesCS2B02G378300 , TraesCS2B02G378300 , TraesCS2A02G282900 , TraesCS2B02G300200 , TraesCS2B02G300200 , TraesCS2B02G300200 , TraesCS2A02G358900 , TraesCS2D02G357800 , TraesCS2D02G281600 , TraesCS2A02G358900
Populus -


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cDNA sequences
Sobic.006G050500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G178300 peptidyl-prolyl cis-trans isomerase, putative, expressed -
2 Sobic.002G272500 6-phosphogluconolactonase, putative, expressed K01057: PGLS, pgl, 6-phosphogluconolactonase
3 Sobic.007G165300 SNARE domain containing protein, putative, expressed K08504: blocked early in transport 1
4 Sobic.006G129900 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor
5 Sobic.010G073500 3-oxoacyl-synthase, putative, expressed K09458: fabF, OXSM, 3-oxoacyl-[acyl-carrier-protein] synthase II
6 Sobic.003G170300 LYR motif containing protein, putative, expressed K03950: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 6
7 Sobic.003G085500 signal peptidase complex subunit 3, putative, expressed K12948: SPCS3, signal peptidase complex subunit 3
8 Sobic.001G506000 N-acetylglucosaminyltransferase, putative, expressed -
9 Sobic.003G113900 zinc finger matrin-type protein 5, putative, expressed K13152: U11/U12 small nuclear ribonucleoprotein 20 kDa protein
10 Sobic.010G059700 galactosyltransferase family protein, putative, expressed -
11 Sobic.002G264300 sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
12 Sobic.002G072300 5-nucleotidase surE, putative, expressed K03787: 5'-nucleotidase
13 Sobic.003G039200 ubiquitin-conjugating enzyme, putative, expressed K10573: UBE2A, UBC2, ubiquitin-conjugating enzyme E2 A
14 Sobic.003G388700 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
15 Sobic.005G175000 glutathione S-transferase, N-terminal domain containing protein, expressed K00799: GST, glutathione S-transferase
16 Sobic.010G002800 AGAP000326-PA, putative, expressed K18163: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 6
17 Sobic.003G131300 glycosyl hydrolases family 17 protein, putative, expressed -
18 Sobic.005G112100 ER lumen protein retaining receptor, putative, expressed K10949: ER lumen protein retaining receptor
19 Sobic.004G030400 expressed protein -
20 Sobic.006G122200 glycosyl hydrolase family 5 protein, putative, expressed -


Gene co-expression network
sample Sobic006G050500 Sobic006G050500 Sobic005G178300 Sobic005G178300 Sobic006G050500--Sobic005G178300 Sobic002G272500 Sobic002G272500 Sobic006G050500--Sobic002G272500 Sobic007G165300 Sobic007G165300 Sobic006G050500--Sobic007G165300 Sobic006G129900 Sobic006G129900 Sobic006G050500--Sobic006G129900 Sobic010G073500 Sobic010G073500 Sobic006G050500--Sobic010G073500 Sobic003G170300 Sobic003G170300 Sobic006G050500--Sobic003G170300 Sobic003G085500 Sobic003G085500 Sobic006G050500--Sobic003G085500 Sobic001G506000 Sobic001G506000 Sobic006G050500--Sobic001G506000 Sobic003G113900 Sobic003G113900 Sobic006G050500--Sobic003G113900 Sobic005G178300--Sobic006G050500 Sobic002G199400 Sobic002G199400 Sobic005G178300--Sobic002G199400 Sobic005G178300--Sobic003G085500 Sobic010G002800 Sobic010G002800 Sobic005G178300--Sobic010G002800 Sobic005G178300--Sobic007G165300 Sobic006G259900 Sobic006G259900 Sobic005G178300--Sobic006G259900 Sobic003G388700 Sobic003G388700 Sobic005G178300--Sobic003G388700 Sobic005G112100 Sobic005G112100 Sobic005G178300--Sobic005G112100 Sobic010G258000 Sobic010G258000 Sobic005G178300--Sobic010G258000 Sobic001G503801 Sobic001G503801 Sobic002G272500--Sobic001G503801 Sobic002G272500--Sobic006G050500 Sobic001G290700 Sobic001G290700 Sobic002G272500--Sobic001G290700 Sobic002G035300 Sobic002G035300 Sobic002G272500--Sobic002G035300 Sobic003G420900 Sobic003G420900 Sobic002G272500--Sobic003G420900 Sobic002G272500--Sobic007G165300 Sobic005G031000 Sobic005G031000 Sobic002G272500--Sobic005G031000 Sobic001G318100 Sobic001G318100 Sobic002G272500--Sobic001G318100 Sobic003G392600 Sobic003G392600 Sobic002G272500--Sobic003G392600 Sobic004G184000 Sobic004G184000 Sobic007G165300--Sobic004G184000 Sobic007G217400 Sobic007G217400 Sobic007G165300--Sobic007G217400 Sobic009G207200 Sobic009G207200 Sobic007G165300--Sobic009G207200 Sobic007G165300--Sobic003G170300 Sobic003G028100 Sobic003G028100 Sobic007G165300--Sobic003G028100 Sobic007G165300--Sobic001G506000 Sobic007G165300--Sobic005G178300 Sobic009G201800 Sobic009G201800 Sobic007G165300--Sobic009G201800 Sobic007G165300--Sobic010G258000 Sobic005G047000 Sobic005G047000 Sobic006G129900--Sobic005G047000 Sobic004G010700 Sobic004G010700 Sobic006G129900--Sobic004G010700 Sobic006G129900--Sobic005G178300 Sobic006G129900--Sobic010G258000 Sobic006G129900--Sobic007G165300 Sobic004G015300 Sobic004G015300 Sobic006G129900--Sobic004G015300 Sobic003G248300 Sobic003G248300 Sobic006G129900--Sobic003G248300 Sobic001G176900 Sobic001G176900 Sobic006G129900--Sobic001G176900 Sobic005G110526 Sobic005G110526 Sobic006G129900--Sobic005G110526 Sobic008G059900 Sobic008G059900 Sobic010G073500--Sobic008G059900 Sobic002G264300 Sobic002G264300 Sobic010G073500--Sobic002G264300 Sobic006G237000 Sobic006G237000 Sobic010G073500--Sobic006G237000 Sobic009G195700 Sobic009G195700 Sobic010G073500--Sobic009G195700 Sobic010G073500--Sobic005G031000 Sobic006G029400 Sobic006G029400 Sobic010G073500--Sobic006G029400 Sobic002G125800 Sobic002G125800 Sobic010G073500--Sobic002G125800 Sobic001G200200 Sobic001G200200 Sobic010G073500--Sobic001G200200 Sobic001G199500 Sobic001G199500 Sobic010G073500--Sobic001G199500 Sobic009G240700 Sobic009G240700 Sobic003G170300--Sobic009G240700 Sobic008G150300 Sobic008G150300 Sobic003G170300--Sobic008G150300 Sobic001G473400 Sobic001G473400 Sobic003G170300--Sobic001G473400 Sobic004G155100 Sobic004G155100 Sobic003G170300--Sobic004G155100 Sobic004G282700 Sobic004G282700 Sobic003G170300--Sobic004G282700 Sobic002G180300 Sobic002G180300 Sobic003G170300--Sobic002G180300 Sobic002G308300 Sobic002G308300 Sobic003G170300--Sobic002G308300 Sobic001G282500 Sobic001G282500 Sobic003G170300--Sobic001G282500 Sobic010G264300 Sobic010G264300 Sobic003G170300--Sobic010G264300 Sobic001G485300 Sobic001G485300 Sobic003G085500--Sobic001G485300 Sobic001G352800 Sobic001G352800 Sobic003G085500--Sobic001G352800 Sobic003G085500--Sobic010G002800 Sobic004G354100 Sobic004G354100 Sobic003G085500--Sobic004G354100 Sobic007G022700 Sobic007G022700 Sobic003G085500--Sobic007G022700 Sobic002G392400 Sobic002G392400 Sobic003G085500--Sobic002G392400 Sobic002G276800 Sobic002G276800 Sobic003G085500--Sobic002G276800 Sobic003G085500--Sobic003G388700 Sobic004G186100 Sobic004G186100 Sobic003G085500--Sobic004G186100 Sobic001G487100 Sobic001G487100 Sobic001G506000--Sobic001G487100 Sobic004G075200 Sobic004G075200 Sobic001G506000--Sobic004G075200 Sobic001G115500 Sobic001G115500 Sobic001G506000--Sobic001G115500 Sobic005G175000 Sobic005G175000 Sobic001G506000--Sobic005G175000 Sobic001G506000--Sobic009G207200 Sobic003G122000 Sobic003G122000 Sobic001G506000--Sobic003G122000 Sobic001G469200 Sobic001G469200 Sobic001G506000--Sobic001G469200 Sobic001G506000--Sobic007G165300 Sobic002G280900 Sobic002G280900 Sobic001G506000--Sobic002G280900 Sobic002G399900 Sobic002G399900 Sobic003G113900--Sobic002G399900 Sobic007G036800 Sobic007G036800 Sobic003G113900--Sobic007G036800 Sobic003G028400 Sobic003G028400 Sobic003G113900--Sobic003G028400 Sobic010G059700 Sobic010G059700 Sobic003G113900--Sobic010G059700 Sobic007G030600 Sobic007G030600 Sobic003G113900--Sobic007G030600 Sobic007G072100 Sobic007G072100 Sobic003G113900--Sobic007G072100 Sobic004G129500 Sobic004G129500 Sobic003G113900--Sobic004G129500 Sobic007G167800 Sobic007G167800 Sobic003G113900--Sobic007G167800 Sobic006G127500 Sobic006G127500 Sobic003G113900--Sobic006G127500
Octagon: transcription factors


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