Gene annotation
Transcriptome id Sobic.002G272500.1
Synonym Sb02g030620, PGL3, EMB2024
Functional annotation 6-phosphogluconolactonase, putative, expressed
UniProt C5X653
Pfam PF01182
Panther DB PTHR11054 PTHR11054:SF3
NCBI CDD KOG3147; 6-phosphogluconolactonase - like protein
KEGG Orthology K01057; PGLS, pgl, 6-phosphogluconolactonase
Gene Ontology GO:0005975; carbohydrate metabolic process


Orthologs (automatic annotation)
TAIR AT5G24400 : NagB/RpiA/CoA transferase-like superfamily protein
RAP-DB (Rice) LOC_Os09g35970.1 : 6-phosphogluconolactonase, putative, expressed
MaizeGDB (Corn) Zm00025a005713 , Zm00025a014406
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G272500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G503801 - -
2 Sobic.006G050500 methylisocitrate lyase 2, putative, expressed -
3 Sobic.001G290700 AGAP003819-PA, putative, expressed K09008: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3
4 Sobic.002G035300 acetyltransferase, GNAT family protein, expressed -
5 Sobic.003G420900 S-formylglutathione hydrolase, putative, expressed K01070: frmB, ESD, S-formylglutathione hydrolase
6 Sobic.007G165300 SNARE domain containing protein, putative, expressed K08504: blocked early in transport 1
7 Sobic.005G031000 FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed K00225: L-galactono-1,4-lactone dehydrogenase
8 Sobic.001G318100 - -
9 Sobic.003G392600 expressed protein -
10 Sobic.004G037200 cycloartenol synthase, putative, expressed K01853: cycloartenol synthase
11 Sobic.008G059900 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K00627: DLAT, aceF, pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase)
12 Sobic.010G155600 DJ-1 family protein, putative, expressed K03152: protein deglycase
13 Sobic.003G216500 vacuolar ATP synthase, putative, expressed K03661: ATPeV0B, V-type H+-transporting ATPase 21kDa proteolipid subunit
14 Sobic.010G165700 expressed protein K07466: RFA1, RPA1, replication factor A1
15 Sobic.004G166800 ribosomal protein, putative, expressed -
16 Sobic.010G060166 - -
17 Sobic.005G178300 peptidyl-prolyl cis-trans isomerase, putative, expressed -
18 Sobic.002G340700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@secretory carrier-associated membrane protein, putative, expressed -
19 Sobic.004G219200 - -
20 Sobic.006G129900 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor


Gene co-expression network
sample Sobic002G272500 Sobic002G272500 Sobic001G503801 Sobic001G503801 Sobic002G272500--Sobic001G503801 Sobic006G050500 Sobic006G050500 Sobic002G272500--Sobic006G050500 Sobic001G290700 Sobic001G290700 Sobic002G272500--Sobic001G290700 Sobic002G035300 Sobic002G035300 Sobic002G272500--Sobic002G035300 Sobic003G420900 Sobic003G420900 Sobic002G272500--Sobic003G420900 Sobic007G165300 Sobic007G165300 Sobic002G272500--Sobic007G165300 Sobic005G031000 Sobic005G031000 Sobic002G272500--Sobic005G031000 Sobic001G318100 Sobic001G318100 Sobic002G272500--Sobic001G318100 Sobic003G392600 Sobic003G392600 Sobic002G272500--Sobic003G392600 Sobic001G503801--Sobic002G272500 Sobic002G208400 Sobic002G208400 Sobic001G503801--Sobic002G208400 Sobic006G212900 Sobic006G212900 Sobic001G503801--Sobic006G212900 Sobic009G216700 Sobic009G216700 Sobic001G503801--Sobic009G216700 Sobic010G155600 Sobic010G155600 Sobic001G503801--Sobic010G155600 Sobic003G166500 Sobic003G166500 Sobic001G503801--Sobic003G166500 Sobic004G356200 Sobic004G356200 Sobic001G503801--Sobic004G356200 Sobic004G030400 Sobic004G030400 Sobic001G503801--Sobic004G030400 Sobic005G178300 Sobic005G178300 Sobic001G503801--Sobic005G178300 Sobic006G050500--Sobic005G178300 Sobic006G050500--Sobic002G272500 Sobic006G050500--Sobic007G165300 Sobic006G129900 Sobic006G129900 Sobic006G050500--Sobic006G129900 Sobic010G073500 Sobic010G073500 Sobic006G050500--Sobic010G073500 Sobic003G170300 Sobic003G170300 Sobic006G050500--Sobic003G170300 Sobic003G085500 Sobic003G085500 Sobic006G050500--Sobic003G085500 Sobic001G506000 Sobic001G506000 Sobic006G050500--Sobic001G506000 Sobic003G113900 Sobic003G113900 Sobic006G050500--Sobic003G113900 Sobic003G216500 Sobic003G216500 Sobic001G290700--Sobic003G216500 Sobic001G290700--Sobic002G272500 Sobic006G002201 Sobic006G002201 Sobic001G290700--Sobic006G002201 Sobic008G150300 Sobic008G150300 Sobic001G290700--Sobic008G150300 Sobic010G026925 Sobic010G026925 Sobic001G290700--Sobic010G026925 Sobic001G290700--Sobic003G170300 Sobic006G211800 Sobic006G211800 Sobic001G290700--Sobic006G211800 Sobic003G165101 Sobic003G165101 Sobic001G290700--Sobic003G165101 Sobic006G020900 Sobic006G020900 Sobic001G290700--Sobic006G020900 Sobic005G145800 Sobic005G145800 Sobic002G035300--Sobic005G145800 Sobic001G260300 Sobic001G260300 Sobic002G035300--Sobic001G260300 Sobic002G035300--Sobic002G272500 Sobic009G070250 Sobic009G070250 Sobic002G035300--Sobic009G070250 Sobic001G273000 Sobic001G273000 Sobic002G035300--Sobic001G273000 Sobic001G262800 Sobic001G262800 Sobic002G035300--Sobic001G262800 Sobic001G091200 Sobic001G091200 Sobic002G035300--Sobic001G091200 Sobic008G120132 Sobic008G120132 Sobic002G035300--Sobic008G120132 Sobic005G102350 Sobic005G102350 Sobic002G035300--Sobic005G102350 Sobic001G376700 Sobic001G376700 Sobic003G420900--Sobic001G376700 Sobic004G296800 Sobic004G296800 Sobic003G420900--Sobic004G296800 Sobic003G165800 Sobic003G165800 Sobic003G420900--Sobic003G165800 Sobic009G231100 Sobic009G231100 Sobic003G420900--Sobic009G231100 Sobic002G333100 Sobic002G333100 Sobic003G420900--Sobic002G333100 Sobic004G275600 Sobic004G275600 Sobic003G420900--Sobic004G275600 Sobic010G134500 Sobic010G134500 Sobic003G420900--Sobic010G134500 Sobic003G261200 Sobic003G261200 Sobic003G420900--Sobic003G261200 Sobic001G543700 Sobic001G543700 Sobic003G420900--Sobic001G543700 Sobic004G184000 Sobic004G184000 Sobic007G165300--Sobic004G184000 Sobic007G217400 Sobic007G217400 Sobic007G165300--Sobic007G217400 Sobic009G207200 Sobic009G207200 Sobic007G165300--Sobic009G207200 Sobic007G165300--Sobic003G170300 Sobic003G028100 Sobic003G028100 Sobic007G165300--Sobic003G028100 Sobic007G165300--Sobic001G506000 Sobic007G165300--Sobic005G178300 Sobic009G201800 Sobic009G201800 Sobic007G165300--Sobic009G201800 Sobic010G258000 Sobic010G258000 Sobic007G165300--Sobic010G258000 Sobic005G031000--Sobic004G356200 Sobic001G200200 Sobic001G200200 Sobic005G031000--Sobic001G200200 Sobic008G059900 Sobic008G059900 Sobic005G031000--Sobic008G059900 Sobic002G125800 Sobic002G125800 Sobic005G031000--Sobic002G125800 Sobic001G434700 Sobic001G434700 Sobic005G031000--Sobic001G434700 Sobic006G237000 Sobic006G237000 Sobic005G031000--Sobic006G237000 Sobic001G533100 Sobic001G533100 Sobic005G031000--Sobic001G533100 Sobic004G037200 Sobic004G037200 Sobic005G031000--Sobic004G037200 Sobic005G031000--Sobic010G155600 Sobic010G165700 Sobic010G165700 Sobic001G318100--Sobic010G165700 Sobic010G143000 Sobic010G143000 Sobic001G318100--Sobic010G143000 Sobic002G101100 Sobic002G101100 Sobic001G318100--Sobic002G101100 Sobic001G318100--Sobic008G120132 Sobic010G165900 Sobic010G165900 Sobic001G318100--Sobic010G165900 Sobic005G075500 Sobic005G075500 Sobic001G318100--Sobic005G075500 Sobic001G318100--Sobic009G070250 Sobic005G108225 Sobic005G108225 Sobic001G318100--Sobic005G108225 Sobic008G127250 Sobic008G127250 Sobic001G318100--Sobic008G127250 Sobic003G202100 Sobic003G202100 Sobic003G392600--Sobic003G202100 Sobic003G392600--Sobic006G020900 Sobic001G304000 Sobic001G304000 Sobic003G392600--Sobic001G304000 Sobic003G388700 Sobic003G388700 Sobic003G392600--Sobic003G388700 Sobic002G071100 Sobic002G071100 Sobic003G392600--Sobic002G071100 Sobic005G018800 Sobic005G018800 Sobic003G392600--Sobic005G018800 Sobic003G326900 Sobic003G326900 Sobic003G392600--Sobic003G326900 Sobic009G260700 Sobic009G260700 Sobic003G392600--Sobic009G260700 Sobic001G537100 Sobic001G537100 Sobic003G392600--Sobic001G537100
Octagon: transcription factors


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