Gene annotation
Transcriptome id Sobic.001G290700.1
Synonym Sb01g028480
Functional annotation AGAP003819-PA, putative, expressed
UniProt C5WRD5
Pfam PF04430
Panther DB PTHR21192
NCBI CDD KOG3363; Uncharacterized conserved nuclear protein
KEGG Orthology K09008; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G60150 : Protein of unknown function (DUF498/DUF598)
RAP-DB (Rice) LOC_Os10g42090.1 : AGAP003819-PA, putative, expressed
MaizeGDB (Corn) Zm00025a003455 , Zm00025a051853
Brachypodium KQJ97882
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G216500 vacuolar ATP synthase, putative, expressed K03661: ATPeV0B, V-type H+-transporting ATPase 21kDa proteolipid subunit
2 Sobic.002G272500 6-phosphogluconolactonase, putative, expressed K01057: PGLS, pgl, 6-phosphogluconolactonase
3 Sobic.006G002201 - -
4 Sobic.008G150300 Lg106, putative, expressed -
5 Sobic.010G026925 - K01689: ENO, enolase
6 Sobic.003G170300 LYR motif containing protein, putative, expressed K03950: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 6
7 Sobic.006G211800 coatomer subunit epsilon, putative, expressed K17268: coatomer subunit epsilon
8 Sobic.003G165101 - K12876: RBM8A, RNA-binding protein 8A
9 Sobic.006G020900 phosphoglycerate mutase, putative, expressed -
10 Sobic.001G473400 NADH dehydrogenase 1 alpha subcomplex subunit 13, putative, expressed K11353: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 13
11 Sobic.004G282700 synthase, putative, expressed K12451: 3,5-epimerase/4-reductase
12 Sobic.009G072000 phosphoribosylformylglycinamidine synthase, putative, expressed K01933: phosphoribosylformylglycinamidine cyclo-ligase
13 Sobic.002G410700 vacuolar ATP synthase subunit F, putative, expressed K02151: ATPeV1F, V-type H+-transporting ATPase subunit F
14 Sobic.009G240700 -(PubMedID : 26976818)@lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
15 Sobic.003G392600 expressed protein -
16 Sobic.003G388700 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
17 Sobic.007G161200 expressed protein -
18 Sobic.009G256000 vacuolar ATP synthase subunit C, putative, expressed K02148: ATPeV1C, V-type H+-transporting ATPase subunit C
19 Sobic.005G105500 expressed protein -
20 Sobic.007G165300 SNARE domain containing protein, putative, expressed K08504: blocked early in transport 1


Gene co-expression network
sample Sobic001G290700 Sobic001G290700 Sobic003G216500 Sobic003G216500 Sobic001G290700--Sobic003G216500 Sobic002G272500 Sobic002G272500 Sobic001G290700--Sobic002G272500 Sobic006G002201 Sobic006G002201 Sobic001G290700--Sobic006G002201 Sobic008G150300 Sobic008G150300 Sobic001G290700--Sobic008G150300 Sobic010G026925 Sobic010G026925 Sobic001G290700--Sobic010G026925 Sobic003G170300 Sobic003G170300 Sobic001G290700--Sobic003G170300 Sobic006G211800 Sobic006G211800 Sobic001G290700--Sobic006G211800 Sobic003G165101 Sobic003G165101 Sobic001G290700--Sobic003G165101 Sobic006G020900 Sobic006G020900 Sobic001G290700--Sobic006G020900 Sobic002G410700 Sobic002G410700 Sobic003G216500--Sobic002G410700 Sobic004G182500 Sobic004G182500 Sobic003G216500--Sobic004G182500 Sobic009G240700 Sobic009G240700 Sobic003G216500--Sobic009G240700 Sobic001G473400 Sobic001G473400 Sobic003G216500--Sobic001G473400 Sobic003G216500--Sobic003G170300 Sobic002G073800 Sobic002G073800 Sobic003G216500--Sobic002G073800 Sobic003G279200 Sobic003G279200 Sobic003G216500--Sobic003G279200 Sobic003G216500--Sobic006G020900 Sobic003G216500--Sobic001G290700 Sobic001G503801 Sobic001G503801 Sobic002G272500--Sobic001G503801 Sobic006G050500 Sobic006G050500 Sobic002G272500--Sobic006G050500 Sobic002G272500--Sobic001G290700 Sobic002G035300 Sobic002G035300 Sobic002G272500--Sobic002G035300 Sobic003G420900 Sobic003G420900 Sobic002G272500--Sobic003G420900 Sobic007G165300 Sobic007G165300 Sobic002G272500--Sobic007G165300 Sobic005G031000 Sobic005G031000 Sobic002G272500--Sobic005G031000 Sobic001G318100 Sobic001G318100 Sobic002G272500--Sobic001G318100 Sobic003G392600 Sobic003G392600 Sobic002G272500--Sobic003G392600 Sobic003G103400 Sobic003G103400 Sobic006G002201--Sobic003G103400 Sobic007G061400 Sobic007G061400 Sobic006G002201--Sobic007G061400 Sobic005G105500 Sobic005G105500 Sobic006G002201--Sobic005G105500 Sobic004G291400 Sobic004G291400 Sobic006G002201--Sobic004G291400 Sobic005G111900 Sobic005G111900 Sobic006G002201--Sobic005G111900 Sobic003G196800 Sobic003G196800 Sobic006G002201--Sobic003G196800 Sobic001G468600 Sobic001G468600 Sobic006G002201--Sobic001G468600 Sobic001G458700 Sobic001G458700 Sobic006G002201--Sobic001G458700 Sobic004G124100 Sobic004G124100 Sobic006G002201--Sobic004G124100 Sobic008G150300--Sobic003G170300 Sobic001G281900 Sobic001G281900 Sobic008G150300--Sobic001G281900 Sobic001G338400 Sobic001G338400 Sobic008G150300--Sobic001G338400 Sobic001G458800 Sobic001G458800 Sobic008G150300--Sobic001G458800 Sobic007G161200 Sobic007G161200 Sobic008G150300--Sobic007G161200 Sobic008G150300--Sobic002G410700 Sobic008G150300--Sobic005G105500 Sobic007G159700 Sobic007G159700 Sobic008G150300--Sobic007G159700 Sobic008G150300--Sobic006G211800 Sobic003G336000 Sobic003G336000 Sobic010G026925--Sobic003G336000 Sobic005G033200 Sobic005G033200 Sobic010G026925--Sobic005G033200 Sobic006G276700 Sobic006G276700 Sobic010G026925--Sobic006G276700 Sobic001G301800 Sobic001G301800 Sobic010G026925--Sobic001G301800 Sobic010G026925--Sobic001G290700 Sobic006G178000 Sobic006G178000 Sobic010G026925--Sobic006G178000 Sobic010G026925--Sobic003G216500 Sobic010G027000 Sobic010G027000 Sobic010G026925--Sobic010G027000 Sobic009G017800 Sobic009G017800 Sobic010G026925--Sobic009G017800 Sobic003G170300--Sobic009G240700 Sobic003G170300--Sobic008G150300 Sobic003G170300--Sobic001G473400 Sobic004G155100 Sobic004G155100 Sobic003G170300--Sobic004G155100 Sobic004G282700 Sobic004G282700 Sobic003G170300--Sobic004G282700 Sobic002G180300 Sobic002G180300 Sobic003G170300--Sobic002G180300 Sobic002G308300 Sobic002G308300 Sobic003G170300--Sobic002G308300 Sobic001G282500 Sobic001G282500 Sobic003G170300--Sobic001G282500 Sobic010G264300 Sobic010G264300 Sobic003G170300--Sobic010G264300 Sobic002G428200 Sobic002G428200 Sobic006G211800--Sobic002G428200 Sobic007G176200 Sobic007G176200 Sobic006G211800--Sobic007G176200 Sobic002G423800 Sobic002G423800 Sobic006G211800--Sobic002G423800 Sobic006G252200 Sobic006G252200 Sobic006G211800--Sobic006G252200 Sobic006G211800--Sobic005G105500 Sobic009G234400 Sobic009G234400 Sobic006G211800--Sobic009G234400 Sobic001G444300 Sobic001G444300 Sobic006G211800--Sobic001G444300 Sobic001G404100 Sobic001G404100 Sobic006G211800--Sobic001G404100 Sobic009G212300 Sobic009G212300 Sobic006G211800--Sobic009G212300 Sobic004G275600 Sobic004G275600 Sobic003G165101--Sobic004G275600 Sobic010G179700 Sobic010G179700 Sobic003G165101--Sobic010G179700 Sobic004G283600 Sobic004G283600 Sobic003G165101--Sobic004G283600 Sobic006G010400 Sobic006G010400 Sobic003G165101--Sobic006G010400 Sobic001G428800 Sobic001G428800 Sobic003G165101--Sobic001G428800 Sobic003G165101--Sobic007G161200 Sobic006G237000 Sobic006G237000 Sobic003G165101--Sobic006G237000 Sobic003G309300 Sobic003G309300 Sobic003G165101--Sobic003G309300 Sobic005G163700 Sobic005G163700 Sobic003G165101--Sobic005G163700 Sobic006G020900--Sobic001G473400 Sobic006G020900--Sobic002G410700 Sobic003G388700 Sobic003G388700 Sobic006G020900--Sobic003G388700 Sobic006G020900--Sobic005G105500 Sobic006G020900--Sobic004G291400 Sobic001G304000 Sobic001G304000 Sobic006G020900--Sobic001G304000 Sobic009G256000 Sobic009G256000 Sobic006G020900--Sobic009G256000 Sobic006G020900--Sobic003G392600 Sobic006G020900--Sobic009G240700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.