Gene annotation
Transcriptome id Sobic.003G165101.1
Synonym -
Functional annotation -
UniProt A0A1W0VXM8
Pfam PF00076
Panther DB PTHR23139
NCBI CDD KOG0130; RNA-binding protein RBM8/Tsunagi (RRM superfamily)
KEGG Orthology K12876; RBM8A, RNA-binding protein 8A
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G51510 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os05g04850.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK04415
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G275600 hydrolase, putative, expressed K01438: acetylornithine deacetylase
2 Sobic.010G179700 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05605: 3-hydroxyisobutyryl-CoA hydrolase
3 Sobic.004G283600 O-acyltransferase, putative, expressed K13519: LPT1, lysophospholipid acyltransferase
4 Sobic.006G010400 tRNA-dihydrouridine synthase 3-like, putative, expressed K05544: tRNA-dihydrouridine synthase 3
5 Sobic.001G428800 vacuolar sorting protein, putative, expressed -
6 Sobic.007G161200 expressed protein -
7 Sobic.006G237000 3-oxoacyl-synthase III, chloroplast precursor, putative, expressed K00648: 3-oxoacyl-[acyl-carrier-protein] synthase III
8 Sobic.003G309300 radical SAM enzyme, putative, expressed K03644: lipA, LIAS, LIP1, lipoyl synthase
9 Sobic.005G163700 T-complex protein, putative, expressed K09500: T-complex protein 1 subunit theta
10 Sobic.002G256200 cyclin, putative, expressed K15161: CCNC, cyclin-C
11 Sobic.001G537500 GTP-binding protein, putative, expressed K06944: uncharacterized protein
12 Sobic.006G043700 3-oxoacyl-reductase, chloroplast precursor, putative, expressed K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase
13 Sobic.004G208500 eukaryotic translation initiation factor 2A, putative, expressed K15026: translation initiation factor 2A
14 Sobic.003G202100 Uncharacterized ACR, COG1565 containing protein, putative, expressed K18164: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 7
15 Sobic.002G144275 - -
16 Sobic.003G200800 vacuolar ATP synthase subunit d, putative, expressed K02146: ATPeV0D, V-type H+-transporting ATPase subunit d
17 Sobic.004G060100 ATP synthase, putative, expressed K02145: ATPeV1A, V-type H+-transporting ATPase subunit A
18 Sobic.004G075200 protein kinase PKN/PRK1, effector, putative, expressed -
19 Sobic.007G071900 GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
20 Sobic.007G145400 expressed protein -


Gene co-expression network
sample Sobic003G165101 Sobic003G165101 Sobic004G275600 Sobic004G275600 Sobic003G165101--Sobic004G275600 Sobic010G179700 Sobic010G179700 Sobic003G165101--Sobic010G179700 Sobic004G283600 Sobic004G283600 Sobic003G165101--Sobic004G283600 Sobic006G010400 Sobic006G010400 Sobic003G165101--Sobic006G010400 Sobic001G428800 Sobic001G428800 Sobic003G165101--Sobic001G428800 Sobic007G161200 Sobic007G161200 Sobic003G165101--Sobic007G161200 Sobic006G237000 Sobic006G237000 Sobic003G165101--Sobic006G237000 Sobic003G309300 Sobic003G309300 Sobic003G165101--Sobic003G309300 Sobic005G163700 Sobic005G163700 Sobic003G165101--Sobic005G163700 Sobic004G275600--Sobic003G309300 Sobic004G275600--Sobic003G165101 Sobic001G537500 Sobic001G537500 Sobic004G275600--Sobic001G537500 Sobic009G124000 Sobic009G124000 Sobic004G275600--Sobic009G124000 Sobic006G073200 Sobic006G073200 Sobic004G275600--Sobic006G073200 Sobic007G071900 Sobic007G071900 Sobic004G275600--Sobic007G071900 Sobic003G420900 Sobic003G420900 Sobic004G275600--Sobic003G420900 Sobic008G067100 Sobic008G067100 Sobic004G275600--Sobic008G067100 Sobic004G257100 Sobic004G257100 Sobic004G275600--Sobic004G257100 Sobic010G179700--Sobic003G165101 Sobic001G467100 Sobic001G467100 Sobic010G179700--Sobic001G467100 Sobic004G208500 Sobic004G208500 Sobic010G179700--Sobic004G208500 Sobic003G395300 Sobic003G395300 Sobic010G179700--Sobic003G395300 Sobic002G144275 Sobic002G144275 Sobic010G179700--Sobic002G144275 Sobic001G004200 Sobic001G004200 Sobic010G179700--Sobic001G004200 Sobic008G072200 Sobic008G072200 Sobic010G179700--Sobic008G072200 Sobic004G075200 Sobic004G075200 Sobic010G179700--Sobic004G075200 Sobic010G179700--Sobic005G163700 Sobic009G256000 Sobic009G256000 Sobic004G283600--Sobic009G256000 Sobic004G060100 Sobic004G060100 Sobic004G283600--Sobic004G060100 Sobic004G283600--Sobic007G161200 Sobic005G018800 Sobic005G018800 Sobic004G283600--Sobic005G018800 Sobic005G004100 Sobic005G004100 Sobic004G283600--Sobic005G004100 Sobic008G021200 Sobic008G021200 Sobic004G283600--Sobic008G021200 Sobic003G200800 Sobic003G200800 Sobic004G283600--Sobic003G200800 Sobic004G283600--Sobic003G165101 Sobic004G283600--Sobic001G004200 Sobic001G251600 Sobic001G251600 Sobic006G010400--Sobic001G251600 Sobic006G084000 Sobic006G084000 Sobic006G010400--Sobic006G084000 Sobic006G010400--Sobic007G071900 Sobic006G010400--Sobic001G537500 Sobic009G249800 Sobic009G249800 Sobic006G010400--Sobic009G249800 Sobic007G140400 Sobic007G140400 Sobic006G010400--Sobic007G140400 Sobic008G051200 Sobic008G051200 Sobic006G010400--Sobic008G051200 Sobic006G010400--Sobic004G257100 Sobic001G460500 Sobic001G460500 Sobic006G010400--Sobic001G460500 Sobic001G358500 Sobic001G358500 Sobic001G428800--Sobic001G358500 Sobic001G449900 Sobic001G449900 Sobic001G428800--Sobic001G449900 Sobic010G230600 Sobic010G230600 Sobic001G428800--Sobic010G230600 Sobic004G092500 Sobic004G092500 Sobic001G428800--Sobic004G092500 Sobic010G223300 Sobic010G223300 Sobic001G428800--Sobic010G223300 Sobic001G211900 Sobic001G211900 Sobic001G428800--Sobic001G211900 Sobic001G099900 Sobic001G099900 Sobic001G428800--Sobic001G099900 Sobic010G020400 Sobic010G020400 Sobic001G428800--Sobic010G020400 Sobic009G139300 Sobic009G139300 Sobic001G428800--Sobic009G139300 Sobic007G161200--Sobic004G060100 Sobic007G161200--Sobic003G200800 Sobic007G161200--Sobic005G018800 Sobic007G161200--Sobic009G256000 Sobic004G347600 Sobic004G347600 Sobic007G161200--Sobic004G347600 Sobic007G161200--Sobic008G021200 Sobic001G115700 Sobic001G115700 Sobic007G161200--Sobic001G115700 Sobic008G150300 Sobic008G150300 Sobic007G161200--Sobic008G150300 Sobic007G161200--Sobic004G283600 Sobic002G125800 Sobic002G125800 Sobic006G237000--Sobic002G125800 Sobic005G031000 Sobic005G031000 Sobic006G237000--Sobic005G031000 Sobic001G200200 Sobic001G200200 Sobic006G237000--Sobic001G200200 Sobic010G155600 Sobic010G155600 Sobic006G237000--Sobic010G155600 Sobic010G003900 Sobic010G003900 Sobic006G237000--Sobic010G003900 Sobic002G155100 Sobic002G155100 Sobic006G237000--Sobic002G155100 Sobic008G059900 Sobic008G059900 Sobic006G237000--Sobic008G059900 Sobic005G098800 Sobic005G098800 Sobic006G237000--Sobic005G098800 Sobic006G237000--Sobic001G537500 Sobic003G309300--Sobic004G275600 Sobic006G157000 Sobic006G157000 Sobic003G309300--Sobic006G157000 Sobic003G309300--Sobic003G165101 Sobic003G309300--Sobic007G071900 Sobic008G038600 Sobic008G038600 Sobic003G309300--Sobic008G038600 Sobic003G309300--Sobic006G237000 Sobic003G309300--Sobic009G124000 Sobic003G309300--Sobic001G537500 Sobic010G216300 Sobic010G216300 Sobic003G309300--Sobic010G216300 Sobic005G163700--Sobic001G460500 Sobic002G423500 Sobic002G423500 Sobic005G163700--Sobic002G423500 Sobic002G014400 Sobic002G014400 Sobic005G163700--Sobic002G014400 Sobic004G047200 Sobic004G047200 Sobic005G163700--Sobic004G047200 Sobic004G215700 Sobic004G215700 Sobic005G163700--Sobic004G215700 Sobic004G326600 Sobic004G326600 Sobic005G163700--Sobic004G326600 Sobic005G163700--Sobic001G467100 Sobic005G163700--Sobic004G208500 Sobic002G412700 Sobic002G412700 Sobic005G163700--Sobic002G412700
Octagon: transcription factors


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