Gene annotation
Transcriptome id Sobic.002G340700.1
Synonym Sb02g036500, SC3
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
secretory carrier-associated membrane protein, putative, expressed
UniProt C5XBL7
Pfam PF04144
Panther DB PTHR10687:SF22 PTHR10687
NCBI CDD KOG3088; Secretory carrier membrane protein
KEGG Orthology -
Gene Ontology GO:0015031; protein transport GO:0016021integral component of membrane


Orthologs (automatic annotation)
TAIR AT1G61250 : secretory carrier 3
RAP-DB (Rice) LOC_Os07g37740.1 : secretory carrier-associated membrane protein, putative, expressed
MaizeGDB (Corn) Zm00025a048405 , Zm00025a014922 , Zm00025a027281
Brachypodium KQK15733
Barley HORVU3Hr1G076750.1 , HORVU3Hr1G076750.2 , HORVU3Hr1G076750.3 , HORVU3Hr1G076750.4 , HORVU3Hr1G076750.5 , HORVU2Hr1G040140.5 , HORVU2Hr1G040140.6 , HORVU2Hr1G040140.1 , HORVU3Hr1G076750.6
Wheat TraesCS2D02G212600 , TraesCS2B02G230200 , TraesCS3A02G317400 , TraesCS2A02G203100 , TraesCS2A02G203100 , TraesCS3B02G349100 , TraesCS1B02G336000 , TraesCS1A02G323200 , TraesCS3D02G313900 , TraesCS2A02G203100 , TraesCS1D02G323900
Populus -


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cDNA sequences
Sobic.002G340700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G272500 6-phosphogluconolactonase, putative, expressed K01057: PGLS, pgl, 6-phosphogluconolactonase
2 Sobic.010G165700 expressed protein K07466: RFA1, RPA1, replication factor A1
3 Sobic.009G017800 glutathione S-transferase, N-terminal domain containing protein, expressed -
4 Sobic.010G094301 - -
5 Sobic.001G282500 NADH dehydrogenase 1 alpha subcomplex subunit 12, putative, expressed K11352: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 12
6 Sobic.005G112100 ER lumen protein retaining receptor, putative, expressed K10949: ER lumen protein retaining receptor
7 Sobic.009G070250 - -
8 Sobic.010G002800 AGAP000326-PA, putative, expressed K18163: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 6
9 Sobic.005G178300 peptidyl-prolyl cis-trans isomerase, putative, expressed -
10 Sobic.006G276700 -(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
11 Sobic.001G290700 AGAP003819-PA, putative, expressed K09008: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3
12 Sobic.001G457000 ATP synthase gamma chain, putative, expressed K02136: ATPeF1G, ATP5C1, F-type H+-transporting ATPase subunit gamma
13 Sobic.001G085450 - -
14 Sobic.004G056800 DEFL1 - Defensin and Defensin-like DEFL family, expressed -
15 Sobic.005G110547 - -
16 Sobic.003G085500 signal peptidase complex subunit 3, putative, expressed K12948: SPCS3, signal peptidase complex subunit 3
17 Sobic.003G344700 ammonium transporter protein, putative, expressed K03320: amt, AMT, ammonium transporter, Amt family
18 Sobic.006G109100 class I glutamine amidotransferase, putative, expressed K01658: anthranilate synthase component II
19 Sobic.001G301600 expansin precursor, putative, expressed -
20 Sobic.001G473400 NADH dehydrogenase 1 alpha subcomplex subunit 13, putative, expressed K11353: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 13


Gene co-expression network
sample Sobic002G340700 Sobic002G340700 Sobic002G272500 Sobic002G272500 Sobic002G340700--Sobic002G272500 Sobic010G165700 Sobic010G165700 Sobic002G340700--Sobic010G165700 Sobic009G017800 Sobic009G017800 Sobic002G340700--Sobic009G017800 Sobic010G094301 Sobic010G094301 Sobic002G340700--Sobic010G094301 Sobic001G282500 Sobic001G282500 Sobic002G340700--Sobic001G282500 Sobic005G112100 Sobic005G112100 Sobic002G340700--Sobic005G112100 Sobic009G070250 Sobic009G070250 Sobic002G340700--Sobic009G070250 Sobic010G002800 Sobic010G002800 Sobic002G340700--Sobic010G002800 Sobic005G178300 Sobic005G178300 Sobic002G340700--Sobic005G178300 Sobic001G503801 Sobic001G503801 Sobic002G272500--Sobic001G503801 Sobic006G050500 Sobic006G050500 Sobic002G272500--Sobic006G050500 Sobic001G290700 Sobic001G290700 Sobic002G272500--Sobic001G290700 Sobic002G035300 Sobic002G035300 Sobic002G272500--Sobic002G035300 Sobic003G420900 Sobic003G420900 Sobic002G272500--Sobic003G420900 Sobic007G165300 Sobic007G165300 Sobic002G272500--Sobic007G165300 Sobic005G031000 Sobic005G031000 Sobic002G272500--Sobic005G031000 Sobic001G318100 Sobic001G318100 Sobic002G272500--Sobic001G318100 Sobic003G392600 Sobic003G392600 Sobic002G272500--Sobic003G392600 Sobic010G165700--Sobic001G318100 Sobic010G165900 Sobic010G165900 Sobic010G165700--Sobic010G165900 Sobic002G101100 Sobic002G101100 Sobic010G165700--Sobic002G101100 Sobic005G098900 Sobic005G098900 Sobic010G165700--Sobic005G098900 Sobic005G110547 Sobic005G110547 Sobic010G165700--Sobic005G110547 Sobic002G013800 Sobic002G013800 Sobic010G165700--Sobic002G013800 Sobic010G165700--Sobic009G070250 Sobic005G102350 Sobic005G102350 Sobic010G165700--Sobic005G102350 Sobic010G165800 Sobic010G165800 Sobic010G165700--Sobic010G165800 Sobic009G015700 Sobic009G015700 Sobic009G017800--Sobic009G015700 Sobic001G301800 Sobic001G301800 Sobic009G017800--Sobic001G301800 Sobic001G496300 Sobic001G496300 Sobic009G017800--Sobic001G496300 Sobic001G020100 Sobic001G020100 Sobic009G017800--Sobic001G020100 Sobic001G447600 Sobic001G447600 Sobic009G017800--Sobic001G447600 Sobic006G097200 Sobic006G097200 Sobic009G017800--Sobic006G097200 Sobic003G380600 Sobic003G380600 Sobic009G017800--Sobic003G380600 Sobic010G026925 Sobic010G026925 Sobic009G017800--Sobic010G026925 Sobic001G407600 Sobic001G407600 Sobic009G017800--Sobic001G407600 Sobic003G057900 Sobic003G057900 Sobic010G094301--Sobic003G057900 Sobic001G353800 Sobic001G353800 Sobic010G094301--Sobic001G353800 Sobic001G192100 Sobic001G192100 Sobic010G094301--Sobic001G192100 Sobic009G132900 Sobic009G132900 Sobic010G094301--Sobic009G132900 Sobic006G234100 Sobic006G234100 Sobic010G094301--Sobic006G234100 Sobic010G109500 Sobic010G109500 Sobic010G094301--Sobic010G109500 Sobic002G339200 Sobic002G339200 Sobic010G094301--Sobic002G339200 Sobic001G448400 Sobic001G448400 Sobic010G094301--Sobic001G448400 Sobic006G264201 Sobic006G264201 Sobic010G094301--Sobic006G264201 Sobic002G309700 Sobic002G309700 Sobic001G282500--Sobic002G309700 Sobic009G215300 Sobic009G215300 Sobic001G282500--Sobic009G215300 Sobic004G260200 Sobic004G260200 Sobic001G282500--Sobic004G260200 Sobic002G356400 Sobic002G356400 Sobic001G282500--Sobic002G356400 Sobic002G395000 Sobic002G395000 Sobic001G282500--Sobic002G395000 Sobic002G308300 Sobic002G308300 Sobic001G282500--Sobic002G308300 Sobic001G181500 Sobic001G181500 Sobic001G282500--Sobic001G181500 Sobic003G135600 Sobic003G135600 Sobic001G282500--Sobic003G135600 Sobic001G350600 Sobic001G350600 Sobic001G282500--Sobic001G350600 Sobic002G222200 Sobic002G222200 Sobic005G112100--Sobic002G222200 Sobic010G258000 Sobic010G258000 Sobic005G112100--Sobic010G258000 Sobic007G119600 Sobic007G119600 Sobic005G112100--Sobic007G119600 Sobic001G473400 Sobic001G473400 Sobic005G112100--Sobic001G473400 Sobic005G112100--Sobic005G178300 Sobic003G388700 Sobic003G388700 Sobic005G112100--Sobic003G388700 Sobic002G186300 Sobic002G186300 Sobic005G112100--Sobic002G186300 Sobic001G073600 Sobic001G073600 Sobic005G112100--Sobic001G073600 Sobic008G150300 Sobic008G150300 Sobic005G112100--Sobic008G150300 Sobic005G127900 Sobic005G127900 Sobic009G070250--Sobic005G127900 Sobic008G120132 Sobic008G120132 Sobic009G070250--Sobic008G120132 Sobic009G070250--Sobic005G110547 Sobic009G070250--Sobic001G318100 Sobic005G145800 Sobic005G145800 Sobic009G070250--Sobic005G145800 Sobic005G128800 Sobic005G128800 Sobic009G070250--Sobic005G128800 Sobic005G108225 Sobic005G108225 Sobic009G070250--Sobic005G108225 Sobic009G070250--Sobic010G165700 Sobic005G115350 Sobic005G115350 Sobic009G070250--Sobic005G115350 Sobic001G352800 Sobic001G352800 Sobic010G002800--Sobic001G352800 Sobic003G085500 Sobic003G085500 Sobic010G002800--Sobic003G085500 Sobic010G002800--Sobic003G388700 Sobic002G232400 Sobic002G232400 Sobic010G002800--Sobic002G232400 Sobic001G309200 Sobic001G309200 Sobic010G002800--Sobic001G309200 Sobic004G186100 Sobic004G186100 Sobic010G002800--Sobic004G186100 Sobic010G002800--Sobic002G222200 Sobic010G002800--Sobic001G073600 Sobic004G007700 Sobic004G007700 Sobic010G002800--Sobic004G007700 Sobic005G178300--Sobic006G050500 Sobic002G199400 Sobic002G199400 Sobic005G178300--Sobic002G199400 Sobic005G178300--Sobic003G085500 Sobic005G178300--Sobic010G002800 Sobic005G178300--Sobic007G165300 Sobic006G259900 Sobic006G259900 Sobic005G178300--Sobic006G259900 Sobic005G178300--Sobic003G388700 Sobic005G178300--Sobic005G112100 Sobic005G178300--Sobic010G258000
Octagon: transcription factors


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