Gene annotation
Transcriptome id Sobic.005G112100.1
Synonym ERD2B, Sb05g013420
Functional annotation ER lumen protein retaining receptor, putative, expressed
UniProt C5Y284
Pfam PF00810
Panther DB PTHR10585 PTHR10585:SF29
NCBI CDD KOG3106; ER lumen protein retaining receptor
KEGG Orthology K10949; ER lumen protein retaining receptor
Gene Ontology GO:0016021; integral component of membrane GO:0006621protein retention in ER lumen


Orthologs (automatic annotation)
TAIR AT3G25040 : endoplasmic reticulum retention defective 2B
RAP-DB (Rice) LOC_Os11g28340.1 : ER lumen protein retaining receptor, putative, expressed
MaizeGDB (Corn) Zm00025a012642
Brachypodium KQJ88520 , KQJ88521 , KQJ88519
Barley HORVU5Hr1G120600.8 , HORVU5Hr1G120600.9 , HORVU5Hr1G120600.1 , HORVU5Hr1G120600.2 , HORVU5Hr1G120600.4 , HORVU5Hr1G120600.5 , HORVU5Hr1G120600.6 , HORVU5Hr1G120600.7 , HORVU5Hr1G120600.3 , HORVU5Hr1G120600.10 , HORVU5Hr1G120600.11
Wheat TraesCS5D02G531800 , TraesCS4A02G341000 , TraesCS5B02G533600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G222200 OsPDIL2-3 protein disulfide isomerase PDIL2-3, expressed K09584: PDIA6, protein disulfide-isomerase A6
2 Sobic.010G258000 peptidyl-prolyl cis-trans isomerase, putative, expressed K01802: peptidylprolyl isomerase
3 Sobic.007G119600 clathrin adaptor complex small chain domain containing protein, expressed K12403: AP-4 complex subunit sigma-1
4 Sobic.001G473400 NADH dehydrogenase 1 alpha subcomplex subunit 13, putative, expressed K11353: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 13
5 Sobic.005G178300 peptidyl-prolyl cis-trans isomerase, putative, expressed -
6 Sobic.003G388700 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
7 Sobic.002G186300 serine/threonine-protein kinase 16, putative, expressed K08856: serine/threonine kinase 16
8 Sobic.001G073600 4Fe-4S binding domain containing protein, expressed K03941: NADH dehydrogenase (ubiquinone) Fe-S protein 8
9 Sobic.008G150300 Lg106, putative, expressed -
10 Sobic.001G457000 ATP synthase gamma chain, putative, expressed K02136: ATPeF1G, ATP5C1, F-type H+-transporting ATPase subunit gamma
11 Sobic.003G170300 LYR motif containing protein, putative, expressed K03950: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 6
12 Sobic.010G002800 AGAP000326-PA, putative, expressed K18163: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 6
13 Sobic.009G224400 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
14 Sobic.008G057900 OsAPx6 - Stromal Ascorbate Peroxidase encoding gene 5,8, expressed K00434: L-ascorbate peroxidase
15 Sobic.007G159700 expressed protein K02138: ATPeF0D, ATP5H, F-type H+-transporting ATPase subunit d
16 Sobic.009G191400 NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed K03943: NADH dehydrogenase (ubiquinone) flavoprotein 2
17 Sobic.002G071100 expressed protein K17408: DAP3, small subunit ribosomal protein S29
18 Sobic.004G356300 expressed protein -
19 Sobic.002G410700 vacuolar ATP synthase subunit F, putative, expressed K02151: ATPeV1F, V-type H+-transporting ATPase subunit F
20 Sobic.004G104700 aminotransferase, classes I and II, domain containing protein, expressed K14455: aspartate aminotransferase, mitochondrial


Gene co-expression network
sample Sobic005G112100 Sobic005G112100 Sobic002G222200 Sobic002G222200 Sobic005G112100--Sobic002G222200 Sobic010G258000 Sobic010G258000 Sobic005G112100--Sobic010G258000 Sobic007G119600 Sobic007G119600 Sobic005G112100--Sobic007G119600 Sobic001G473400 Sobic001G473400 Sobic005G112100--Sobic001G473400 Sobic005G178300 Sobic005G178300 Sobic005G112100--Sobic005G178300 Sobic003G388700 Sobic003G388700 Sobic005G112100--Sobic003G388700 Sobic002G186300 Sobic002G186300 Sobic005G112100--Sobic002G186300 Sobic001G073600 Sobic001G073600 Sobic005G112100--Sobic001G073600 Sobic008G150300 Sobic008G150300 Sobic005G112100--Sobic008G150300 Sobic002G222200--Sobic001G073600 Sobic010G002800 Sobic010G002800 Sobic002G222200--Sobic010G002800 Sobic008G018200 Sobic008G018200 Sobic002G222200--Sobic008G018200 Sobic004G011700 Sobic004G011700 Sobic002G222200--Sobic004G011700 Sobic002G232400 Sobic002G232400 Sobic002G222200--Sobic002G232400 Sobic001G135200 Sobic001G135200 Sobic002G222200--Sobic001G135200 Sobic009G224400 Sobic009G224400 Sobic002G222200--Sobic009G224400 Sobic001G352800 Sobic001G352800 Sobic002G222200--Sobic001G352800 Sobic002G222200--Sobic007G119600 Sobic010G258000--Sobic001G473400 Sobic006G203900 Sobic006G203900 Sobic010G258000--Sobic006G203900 Sobic001G035400 Sobic001G035400 Sobic010G258000--Sobic001G035400 Sobic010G258000--Sobic001G073600 Sobic010G258000--Sobic003G388700 Sobic009G016500 Sobic009G016500 Sobic010G258000--Sobic009G016500 Sobic003G170300 Sobic003G170300 Sobic010G258000--Sobic003G170300 Sobic008G136800 Sobic008G136800 Sobic010G258000--Sobic008G136800 Sobic010G258000--Sobic007G119600 Sobic007G119600--Sobic009G224400 Sobic009G191400 Sobic009G191400 Sobic007G119600--Sobic009G191400 Sobic006G041800 Sobic006G041800 Sobic007G119600--Sobic006G041800 Sobic001G457000 Sobic001G457000 Sobic007G119600--Sobic001G457000 Sobic007G119600--Sobic001G073600 Sobic002G255400 Sobic002G255400 Sobic007G119600--Sobic002G255400 Sobic003G028200 Sobic003G028200 Sobic007G119600--Sobic003G028200 Sobic007G119600--Sobic003G388700 Sobic003G260600 Sobic003G260600 Sobic007G119600--Sobic003G260600 Sobic001G473400--Sobic010G258000 Sobic001G473400--Sobic003G170300 Sobic001G473400--Sobic009G016500 Sobic009G240700 Sobic009G240700 Sobic001G473400--Sobic009G240700 Sobic001G473400--Sobic003G388700 Sobic006G020900 Sobic006G020900 Sobic001G473400--Sobic006G020900 Sobic001G282500 Sobic001G282500 Sobic001G473400--Sobic001G282500 Sobic002G395000 Sobic002G395000 Sobic001G473400--Sobic002G395000 Sobic002G308300 Sobic002G308300 Sobic001G473400--Sobic002G308300 Sobic006G050500 Sobic006G050500 Sobic005G178300--Sobic006G050500 Sobic002G199400 Sobic002G199400 Sobic005G178300--Sobic002G199400 Sobic003G085500 Sobic003G085500 Sobic005G178300--Sobic003G085500 Sobic005G178300--Sobic010G002800 Sobic007G165300 Sobic007G165300 Sobic005G178300--Sobic007G165300 Sobic006G259900 Sobic006G259900 Sobic005G178300--Sobic006G259900 Sobic005G178300--Sobic003G388700 Sobic005G178300--Sobic005G112100 Sobic005G178300--Sobic010G258000 Sobic003G388700--Sobic007G119600 Sobic003G388700--Sobic001G073600 Sobic003G135600 Sobic003G135600 Sobic003G388700--Sobic003G135600 Sobic003G388700--Sobic009G191400 Sobic002G079700 Sobic002G079700 Sobic003G388700--Sobic002G079700 Sobic003G388700--Sobic001G473400 Sobic003G388700--Sobic010G002800 Sobic003G388700--Sobic010G258000 Sobic003G388700--Sobic006G041800 Sobic001G458800 Sobic001G458800 Sobic002G186300--Sobic001G458800 Sobic003G034900 Sobic003G034900 Sobic002G186300--Sobic003G034900 Sobic002G186300--Sobic007G119600 Sobic004G297700 Sobic004G297700 Sobic002G186300--Sobic004G297700 Sobic004G244000 Sobic004G244000 Sobic002G186300--Sobic004G244000 Sobic001G115700 Sobic001G115700 Sobic002G186300--Sobic001G115700 Sobic002G186300--Sobic009G224400 Sobic002G186300--Sobic001G457000 Sobic008G057900 Sobic008G057900 Sobic002G186300--Sobic008G057900 Sobic001G073600--Sobic009G191400 Sobic001G073600--Sobic009G224400 Sobic001G073600--Sobic003G135600 Sobic001G073600--Sobic002G395000 Sobic004G344800 Sobic004G344800 Sobic001G073600--Sobic004G344800 Sobic001G073600--Sobic007G119600 Sobic004G347600 Sobic004G347600 Sobic001G073600--Sobic004G347600 Sobic001G073600--Sobic001G458800 Sobic004G155100 Sobic004G155100 Sobic001G073600--Sobic004G155100 Sobic008G150300--Sobic003G170300 Sobic001G281900 Sobic001G281900 Sobic008G150300--Sobic001G281900 Sobic001G338400 Sobic001G338400 Sobic008G150300--Sobic001G338400 Sobic008G150300--Sobic001G458800 Sobic007G161200 Sobic007G161200 Sobic008G150300--Sobic007G161200 Sobic002G410700 Sobic002G410700 Sobic008G150300--Sobic002G410700 Sobic005G105500 Sobic005G105500 Sobic008G150300--Sobic005G105500 Sobic007G159700 Sobic007G159700 Sobic008G150300--Sobic007G159700 Sobic006G211800 Sobic006G211800 Sobic008G150300--Sobic006G211800
Octagon: transcription factors


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