Gene annotation
Transcriptome id Sobic.004G037200.1
Synonym CAS1, Sb04g003200
Functional annotation cycloartenol synthase, putative, expressed
UniProt C5XUJ6
Pfam PF00432
Panther DB PTHR11764 PTHR11764:SF15
NCBI CDD -
KEGG Orthology K01853; cycloartenol synthase
Gene Ontology GO:0003824; catalytic activity


Orthologs (automatic annotation)
TAIR AT2G07050 : cycloartenol synthase 1
RAP-DB (Rice) LOC_Os02g04710.1 : cycloartenol synthase, putative, expressed
MaizeGDB (Corn) Zm00025a018946 , Zm00025a034899
Brachypodium KQJ93262 , KQJ93263 , KQJ93264 , PNT65846 , PNT65847 , PNT65845 , PNT65844 , PNT65843 , PNT65848 , KQJ93257
Barley HORVU6Hr1G019840.6 , HORVU6Hr1G019840.7 , HORVU6Hr1G019840.4 , HORVU6Hr1G019840.5 , HORVU6Hr1G019840.2 , HORVU6Hr1G019840.3 , HORVU6Hr1G019840.1 , HORVU6Hr1G019840.8 , HORVU6Hr1G019840.9 , HORVU6Hr1G019840.18 , HORVU5Hr1G122220.9 , HORVU5Hr1G122220.1 , HORVU6Hr1G019840.14 , HORVU6Hr1G019840.15 , HORVU6Hr1G019840.16 , HORVU6Hr1G019840.17 , HORVU6Hr1G019840.10 , HORVU6Hr1G019840.11 , HORVU6Hr1G019840.12 , HORVU6Hr1G019840.13 , HORVU6Hr1G019840.20 , HORVU6Hr1G019840.19
Wheat TraesCS6D02G098600 , TraesCS6D02G098600 , TraesCS6D02G099400 , TraesCS6D02G099400 , TraesCS6D02G099400 , TraesCS6D02G099400 , TraesCS6D02G099400 , TraesCS6B02G139000 , TraesCS6B02G139000 , TraesCS6B02G139000 , TraesCS6B02G138500 , TraesCS6A02G110300 , TraesCS5B02G545900 , TraesCS2B02G407200 , TraesCS2D02G387000 , TraesCS6A02G110200 , TraesCS6D02G098800 , TraesCS2B02G407300 , TraesCS6A02G110800 , TraesCS6A02G110800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G037200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G166500 NAD dependent epimerase/dehydratase family protein, putative, expressed -
2 Sobic.005G031000 FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed K00225: L-galactono-1,4-lactone dehydrogenase
3 Sobic.001G533100 GHMP kinases ATP-binding protein, putative, expressed K05305: fucokinase
4 Sobic.002G125800 phosphoglucomutase, putative, expressed -
5 Sobic.010G155600 DJ-1 family protein, putative, expressed K03152: protein deglycase
6 Sobic.008G072500 SAM-dependent methyltransferase, putative, expressed K18162: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5
7 Sobic.001G203600 PPR repeat domain containing protein, putative, expressed -
8 Sobic.003G202100 Uncharacterized ACR, COG1565 containing protein, putative, expressed K18164: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 7
9 Sobic.003G048600 OsGrx_S15.1 - glutaredoxin subgroup II, expressed -
10 Sobic.006G017800 ELM2 domain containing protein, putative, expressed -
11 Sobic.007G226800 -(PubMedID : 26976818)@dicarboxylate transporter 5(PubMedID : 27016024)@citrate transporter, putative, expressed K03319: divalent anion:Na+ symporter, DASS family
12 Sobic.002G363800 expressed protein -
13 Sobic.001G530100 hydroxymethylglutaryl-CoA synthase, putative, expressed K01641: hydroxymethylglutaryl-CoA synthase
14 Sobic.001G518600 fatty acid hydroxylase, putative, expressed K14424: plant 4alpha-monomethylsterol monooxygenase
15 Sobic.002G426100 aldehyde dehydrogenase, putative, expressed -
16 Sobic.010G197200 peroxiredoxin, putative, expressed -
17 Sobic.004G356200 expressed protein -
18 Sobic.001G097900 expressed protein -
19 Sobic.003G023200 DNA repair protein Rad51, putative, expressed K10870: RAD51L2, RAD51-like protein 2
20 Sobic.001G434700 phosphomevalonate kinase, putative, expressed K00938: E2.7.4.2, phosphomevalonate kinase


Gene co-expression network
sample Sobic004G037200 Sobic004G037200 Sobic003G166500 Sobic003G166500 Sobic004G037200--Sobic003G166500 Sobic005G031000 Sobic005G031000 Sobic004G037200--Sobic005G031000 Sobic001G533100 Sobic001G533100 Sobic004G037200--Sobic001G533100 Sobic002G125800 Sobic002G125800 Sobic004G037200--Sobic002G125800 Sobic010G155600 Sobic010G155600 Sobic004G037200--Sobic010G155600 Sobic008G072500 Sobic008G072500 Sobic004G037200--Sobic008G072500 Sobic001G203600 Sobic001G203600 Sobic004G037200--Sobic001G203600 Sobic003G202100 Sobic003G202100 Sobic004G037200--Sobic003G202100 Sobic003G048600 Sobic003G048600 Sobic004G037200--Sobic003G048600 Sobic003G166500--Sobic004G037200 Sobic003G166500--Sobic008G072500 Sobic003G166500--Sobic003G202100 Sobic006G017800 Sobic006G017800 Sobic003G166500--Sobic006G017800 Sobic003G166500--Sobic003G048600 Sobic005G018800 Sobic005G018800 Sobic003G166500--Sobic005G018800 Sobic001G115700 Sobic001G115700 Sobic003G166500--Sobic001G115700 Sobic006G106300 Sobic006G106300 Sobic003G166500--Sobic006G106300 Sobic010G133400 Sobic010G133400 Sobic003G166500--Sobic010G133400 Sobic004G356200 Sobic004G356200 Sobic005G031000--Sobic004G356200 Sobic001G200200 Sobic001G200200 Sobic005G031000--Sobic001G200200 Sobic008G059900 Sobic008G059900 Sobic005G031000--Sobic008G059900 Sobic005G031000--Sobic002G125800 Sobic001G434700 Sobic001G434700 Sobic005G031000--Sobic001G434700 Sobic006G237000 Sobic006G237000 Sobic005G031000--Sobic006G237000 Sobic005G031000--Sobic001G533100 Sobic005G031000--Sobic004G037200 Sobic005G031000--Sobic010G155600 Sobic001G533100--Sobic002G125800 Sobic001G533100--Sobic005G031000 Sobic004G034300 Sobic004G034300 Sobic001G533100--Sobic004G034300 Sobic004G336300 Sobic004G336300 Sobic001G533100--Sobic004G336300 Sobic003G130900 Sobic003G130900 Sobic001G533100--Sobic003G130900 Sobic002G426100 Sobic002G426100 Sobic001G533100--Sobic002G426100 Sobic005G129201 Sobic005G129201 Sobic001G533100--Sobic005G129201 Sobic007G173000 Sobic007G173000 Sobic001G533100--Sobic007G173000 Sobic003G005900 Sobic003G005900 Sobic001G533100--Sobic003G005900 Sobic002G125800--Sobic005G031000 Sobic002G125800--Sobic006G237000 Sobic002G125800--Sobic001G533100 Sobic002G125800--Sobic001G200200 Sobic001G004200 Sobic001G004200 Sobic002G125800--Sobic001G004200 Sobic002G125800--Sobic004G356200 Sobic010G192600 Sobic010G192600 Sobic002G125800--Sobic010G192600 Sobic002G125800--Sobic003G166500 Sobic004G030400 Sobic004G030400 Sobic002G125800--Sobic004G030400 Sobic010G155600--Sobic006G237000 Sobic010G155600--Sobic005G031000 Sobic008G097600 Sobic008G097600 Sobic010G155600--Sobic008G097600 Sobic010G155600--Sobic002G125800 Sobic010G155600--Sobic001G434700 Sobic004G275600 Sobic004G275600 Sobic010G155600--Sobic004G275600 Sobic001G537500 Sobic001G537500 Sobic010G155600--Sobic001G537500 Sobic010G155600--Sobic004G356200 Sobic010G155600--Sobic004G037200 Sobic003G049200 Sobic003G049200 Sobic008G072500--Sobic003G049200 Sobic003G260600 Sobic003G260600 Sobic008G072500--Sobic003G260600 Sobic008G072500--Sobic010G133400 Sobic001G378800 Sobic001G378800 Sobic008G072500--Sobic001G378800 Sobic002G193500 Sobic002G193500 Sobic008G072500--Sobic002G193500 Sobic006G232800 Sobic006G232800 Sobic008G072500--Sobic006G232800 Sobic008G072500--Sobic003G048600 Sobic007G118500 Sobic007G118500 Sobic008G072500--Sobic007G118500 Sobic010G086300 Sobic010G086300 Sobic008G072500--Sobic010G086300 Sobic001G203600--Sobic010G086300 Sobic001G117900 Sobic001G117900 Sobic001G203600--Sobic001G117900 Sobic007G204000 Sobic007G204000 Sobic001G203600--Sobic007G204000 Sobic001G052100 Sobic001G052100 Sobic001G203600--Sobic001G052100 Sobic001G203600--Sobic008G072500 Sobic007G226800 Sobic007G226800 Sobic001G203600--Sobic007G226800 Sobic002G182000 Sobic002G182000 Sobic001G203600--Sobic002G182000 Sobic006G220400 Sobic006G220400 Sobic001G203600--Sobic006G220400 Sobic009G063800 Sobic009G063800 Sobic001G203600--Sobic009G063800 Sobic009G260700 Sobic009G260700 Sobic003G202100--Sobic009G260700 Sobic008G171400 Sobic008G171400 Sobic003G202100--Sobic008G171400 Sobic001G304000 Sobic001G304000 Sobic003G202100--Sobic001G304000 Sobic001G537100 Sobic001G537100 Sobic003G202100--Sobic001G537100 Sobic003G304400 Sobic003G304400 Sobic003G202100--Sobic003G304400 Sobic003G392600 Sobic003G392600 Sobic003G202100--Sobic003G392600 Sobic002G071100 Sobic002G071100 Sobic003G202100--Sobic002G071100 Sobic003G388900 Sobic003G388900 Sobic003G202100--Sobic003G388900 Sobic003G202100--Sobic003G166500 Sobic003G048600--Sobic008G072500 Sobic003G048600--Sobic003G049200 Sobic003G028200 Sobic003G028200 Sobic003G048600--Sobic003G028200 Sobic003G048600--Sobic003G202100 Sobic003G048600--Sobic003G166500 Sobic003G048600--Sobic003G260600 Sobic003G048600--Sobic007G226800 Sobic003G048600--Sobic002G071100 Sobic001G352800 Sobic001G352800 Sobic003G048600--Sobic001G352800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.