Gene annotation
Transcriptome id Sobic.001G068700.1
Synonym Sb01g006220
Functional annotation reticulon domain containing protein, putative, expressed
UniProt C5WY96
Pfam PF02453
Panther DB PTHR10994 PTHR10994:SF62
NCBI CDD KOG1792; Reticulon
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G10260 : Reticulon family protein
RAP-DB (Rice) LOC_Os03g56900.1 : reticulon domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a008417
Brachypodium KQK12896
Barley HORVU5Hr1G101680.5 , HORVU5Hr1G101680.4 , HORVU5Hr1G101680.7 , HORVU5Hr1G101680.6 , HORVU5Hr1G101680.1 , HORVU5Hr1G101680.3 , HORVU5Hr1G101680.2 , HORVU5Hr1G101680.8
Wheat TraesCS5A02G418200 , TraesCS5D02G426200 , TraesCS5B02G420300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G261900 expressed protein -
2 Sobic.006G120700 N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, putative, expressed K03434: N-acetylglucosaminylphosphatidylinositol deacetylase
3 Sobic.001G039400 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
4 Sobic.006G213000 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
5 Sobic.009G173500 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
6 Sobic.006G200000 RNA recognition motif, putative, expressed -
7 Sobic.003G387900 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
8 Sobic.009G179100 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e
9 Sobic.009G212400 outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
10 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
11 Sobic.003G073900 expressed protein -
12 Sobic.003G109600 40S ribosomal protein S5, putative, expressed K02989: RP-S5e, small subunit ribosomal protein S5e
13 Sobic.001G016500 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
14 Sobic.010G069400 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
15 Sobic.005G113300 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase
16 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
17 Sobic.004G342400 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
18 Sobic.010G023900 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
19 Sobic.001G537200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta
20 Sobic.009G101700 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e


Gene co-expression network
sample Sobic001G068700 Sobic001G068700 Sobic006G261900 Sobic006G261900 Sobic001G068700--Sobic006G261900 Sobic006G120700 Sobic006G120700 Sobic001G068700--Sobic006G120700 Sobic001G039400 Sobic001G039400 Sobic001G068700--Sobic001G039400 Sobic006G213000 Sobic006G213000 Sobic001G068700--Sobic006G213000 Sobic009G173500 Sobic009G173500 Sobic001G068700--Sobic009G173500 Sobic006G200000 Sobic006G200000 Sobic001G068700--Sobic006G200000 Sobic003G387900 Sobic003G387900 Sobic001G068700--Sobic003G387900 Sobic009G179100 Sobic009G179100 Sobic001G068700--Sobic009G179100 Sobic009G212400 Sobic009G212400 Sobic001G068700--Sobic009G212400 Sobic006G262300 Sobic006G262300 Sobic006G261900--Sobic006G262300 Sobic003G436700 Sobic003G436700 Sobic006G261900--Sobic003G436700 Sobic002G379500 Sobic002G379500 Sobic006G261900--Sobic002G379500 Sobic003G109600 Sobic003G109600 Sobic006G261900--Sobic003G109600 Sobic010G251600 Sobic010G251600 Sobic006G261900--Sobic010G251600 Sobic006G261900--Sobic006G213000 Sobic002G081600 Sobic002G081600 Sobic006G261900--Sobic002G081600 Sobic006G261900--Sobic009G173500 Sobic001G016500 Sobic001G016500 Sobic006G261900--Sobic001G016500 Sobic006G120700--Sobic006G200000 Sobic006G120700--Sobic001G068700 Sobic002G101000 Sobic002G101000 Sobic006G120700--Sobic002G101000 Sobic003G396600 Sobic003G396600 Sobic006G120700--Sobic003G396600 Sobic010G144900 Sobic010G144900 Sobic006G120700--Sobic010G144900 Sobic010G265900 Sobic010G265900 Sobic006G120700--Sobic010G265900 Sobic002G236700 Sobic002G236700 Sobic006G120700--Sobic002G236700 Sobic007G044400 Sobic007G044400 Sobic006G120700--Sobic007G044400 Sobic006G102900 Sobic006G102900 Sobic006G120700--Sobic006G102900 Sobic003G249700 Sobic003G249700 Sobic001G039400--Sobic003G249700 Sobic001G039400--Sobic003G109600 Sobic010G069400 Sobic010G069400 Sobic001G039400--Sobic010G069400 Sobic002G304900 Sobic002G304900 Sobic001G039400--Sobic002G304900 Sobic009G233400 Sobic009G233400 Sobic001G039400--Sobic009G233400 Sobic001G039400--Sobic009G173500 Sobic007G019400 Sobic007G019400 Sobic001G039400--Sobic007G019400 Sobic002G047600 Sobic002G047600 Sobic001G039400--Sobic002G047600 Sobic005G050500 Sobic005G050500 Sobic001G039400--Sobic005G050500 Sobic006G137100 Sobic006G137100 Sobic006G213000--Sobic006G137100 Sobic007G053300 Sobic007G053300 Sobic006G213000--Sobic007G053300 Sobic009G076400 Sobic009G076400 Sobic006G213000--Sobic009G076400 Sobic006G213000--Sobic003G387900 Sobic006G213000--Sobic002G379500 Sobic002G056200 Sobic002G056200 Sobic006G213000--Sobic002G056200 Sobic006G213000--Sobic007G019400 Sobic006G213000--Sobic002G081600 Sobic001G403500 Sobic001G403500 Sobic006G213000--Sobic001G403500 Sobic009G173500--Sobic001G039400 Sobic001G226500 Sobic001G226500 Sobic009G173500--Sobic001G226500 Sobic009G173500--Sobic009G233400 Sobic009G223300 Sobic009G223300 Sobic009G173500--Sobic009G223300 Sobic009G173500--Sobic003G109600 Sobic003G078200 Sobic003G078200 Sobic009G173500--Sobic003G078200 Sobic009G173500--Sobic003G249700 Sobic009G173500--Sobic009G179100 Sobic010G070500 Sobic010G070500 Sobic009G173500--Sobic010G070500 Sobic006G200000--Sobic006G120700 Sobic005G080900 Sobic005G080900 Sobic006G200000--Sobic005G080900 Sobic006G200000--Sobic003G396600 Sobic006G200000--Sobic010G265900 Sobic003G034600 Sobic003G034600 Sobic006G200000--Sobic003G034600 Sobic010G115200 Sobic010G115200 Sobic006G200000--Sobic010G115200 Sobic006G083000 Sobic006G083000 Sobic006G200000--Sobic006G083000 Sobic003G300900 Sobic003G300900 Sobic006G200000--Sobic003G300900 Sobic001G410200 Sobic001G410200 Sobic006G200000--Sobic001G410200 Sobic003G387900--Sobic006G137100 Sobic003G387900--Sobic006G213000 Sobic003G387900--Sobic002G379500 Sobic003G387900--Sobic007G019400 Sobic003G387900--Sobic009G076400 Sobic003G387900--Sobic003G249700 Sobic003G387900--Sobic002G047600 Sobic003G387900--Sobic010G069400 Sobic003G387900--Sobic002G056200 Sobic009G179100--Sobic002G304900 Sobic009G101700 Sobic009G101700 Sobic009G179100--Sobic009G101700 Sobic004G342400 Sobic004G342400 Sobic009G179100--Sobic004G342400 Sobic001G334300 Sobic001G334300 Sobic009G179100--Sobic001G334300 Sobic009G179100--Sobic005G050500 Sobic009G179100--Sobic009G233400 Sobic009G179100--Sobic003G387900 Sobic009G179100--Sobic001G039400 Sobic009G179100--Sobic009G173500 Sobic009G212400--Sobic003G387900 Sobic006G216600 Sobic006G216600 Sobic009G212400--Sobic006G216600 Sobic009G212400--Sobic002G304900 Sobic009G212400--Sobic001G039400 Sobic009G212400--Sobic005G050500 Sobic009G212400--Sobic009G179100 Sobic009G212400--Sobic010G069400 Sobic009G212400--Sobic002G056200 Sobic001G483100 Sobic001G483100 Sobic009G212400--Sobic001G483100
Octagon: transcription factors


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