Gene annotation
Transcriptome id Sobic.008G041400.3,Sobic.008G041400.6,Sobic.008G041400.4,Sobic.008G041400.8,Sobic.008G041400.2,Sobic.008G041400.7,Sobic.008G041400.5
Synonym CAT7, Sb08g003570
Functional annotation amino acid permease family protein, putative, expressed
UniProt A0A1Z5R4V6 , A0A1Z5R5L8 , A0A1Z5R4T8
Pfam PF13906 PF00324 PF13906 PF13520
Panther DB PTHR11785 PTHR11785:SF331
NCBI CDD KOG1286; Amino acid transporters
KEGG Orthology K03294; basic amino acid/polyamine antiporter, APA family
Gene Ontology GO:0016020; membrane GO:0006810transport GO:0015171amino acid transmembrane transporter activity GO:0003333amino acid transmembrane transport GO:0016020membrane GO:0015171amino acid transmembrane transporter activity GO:0003333amino acid transmembrane transport


Orthologs (automatic annotation)
TAIR AT3G10600 : cationic amino acid transporter 7,cationic amino acid transporter 6
RAP-DB (Rice) LOC_Os11g05690.2,LOC_Os12g06060.1 : amino acid permease family protein, putative, expressed
MaizeGDB (Corn) Zm00025a056650 , Zm00025a033523 , Zm00025a053930
Brachypodium KQJ83872 , KQJ92187 , KQJ92188
Barley HORVU5Hr1G040540.20 , HORVU5Hr1G040540.2 , HORVU5Hr1G040540.3 , HORVU5Hr1G040540.1 , HORVU5Hr1G040540.6 , HORVU5Hr1G040540.7 , HORVU5Hr1G040540.4 , HORVU5Hr1G040540.5 , HORVU5Hr1G040540.8 , HORVU5Hr1G040540.9 , HORVU0Hr1G016470.1 , HORVU5Hr1G040540.10 , HORVU5Hr1G040540.11 , HORVU5Hr1G040540.12 , HORVU5Hr1G040540.13 , HORVU5Hr1G040540.14 , HORVU5Hr1G040540.15 , HORVU5Hr1G040540.16 , HORVU5Hr1G040540.17 , HORVU5Hr1G040540.18 , HORVU5Hr1G040540.19
Wheat TraesCS5D02G134500 , TraesCS5A02G126900 , TraesCS2B02G409100 , TraesCS5B02G126000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G103300 dehydrogenase, putative, expressed K18857: alcohol dehydrogenase class-P
2 Sobic.002G414600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@hypoxia-responsive family protein, putative, expressed -
3 Sobic.001G252300 pectinesterase, putative, expressed K01051: pectinesterase
4 Sobic.007G145600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@4-Coumarate-CoA ligase(PubMedID : 22313236)@AMP-binding domain containing protein, expressed K01904: 4-coumarate--CoA ligase
5 Sobic.001G317200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
6 Sobic.003G240600 VQ domain containing protein, putative, expressed -
7 Sobic.005G051200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor ERF110, putative, expressed -
8 Sobic.001G339700 expressed protein -
9 Sobic.008G070350 - K01945: phosphoribosylamine---glycine ligase
10 Sobic.005G103500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dehydrogenase, putative, expressed -
11 Sobic.001G097600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@"salidroside biosynthesis, ethanol degradation II, phytol degradation"(PubMedID : 21853065)@dehydrogenase, putative, expressed K18857: alcohol dehydrogenase class-P
12 Sobic.007G135201 - -
13 Sobic.004G216600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsGrx_C2.1 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
14 Sobic.002G393000 pyrrolidone-carboxylate peptidase, putative, expressed K01304: pyroglutamyl-peptidase
15 Sobic.009G035200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@thioesterase family protein, putative, expressed -
16 Sobic.001G325000 expressed protein -
17 Sobic.001G119100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
18 Sobic.003G088500 multicopper oxidase domain containing protein, expressed -
19 Sobic.001G119400 microsomal glutathione S-transferase 3, putative, expressed K00799: GST, glutathione S-transferase
20 Sobic.004G221500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein K13113: UBL5, ubiquitin-like protein 5


Gene co-expression network
sample Sobic008G041400 Sobic008G041400 Sobic005G103300 Sobic005G103300 Sobic008G041400--Sobic005G103300 Sobic002G414600 Sobic002G414600 Sobic008G041400--Sobic002G414600 Sobic001G252300 Sobic001G252300 Sobic008G041400--Sobic001G252300 Sobic007G145600 Sobic007G145600 Sobic008G041400--Sobic007G145600 Sobic001G317200 Sobic001G317200 Sobic008G041400--Sobic001G317200 Sobic003G240600 Sobic003G240600 Sobic008G041400--Sobic003G240600 Sobic005G051200 Sobic005G051200 Sobic008G041400--Sobic005G051200 Sobic001G339700 Sobic001G339700 Sobic008G041400--Sobic001G339700 Sobic008G070350 Sobic008G070350 Sobic008G041400--Sobic008G070350 Sobic005G103300--Sobic002G414600 Sobic005G103500 Sobic005G103500 Sobic005G103300--Sobic005G103500 Sobic003G334600 Sobic003G334600 Sobic005G103300--Sobic003G334600 Sobic003G387000 Sobic003G387000 Sobic005G103300--Sobic003G387000 Sobic005G103300--Sobic001G252300 Sobic001G097600 Sobic001G097600 Sobic005G103300--Sobic001G097600 Sobic001G119000 Sobic001G119000 Sobic005G103300--Sobic001G119000 Sobic002G082600 Sobic002G082600 Sobic005G103300--Sobic002G082600 Sobic002G359300 Sobic002G359300 Sobic005G103300--Sobic002G359300 Sobic002G414600--Sobic001G252300 Sobic009G183400 Sobic009G183400 Sobic002G414600--Sobic009G183400 Sobic002G414600--Sobic001G097600 Sobic002G393000 Sobic002G393000 Sobic002G414600--Sobic002G393000 Sobic001G119400 Sobic001G119400 Sobic002G414600--Sobic001G119400 Sobic009G008900 Sobic009G008900 Sobic002G414600--Sobic009G008900 Sobic002G414600--Sobic005G051200 Sobic006G173900 Sobic006G173900 Sobic002G414600--Sobic006G173900 Sobic006G275200 Sobic006G275200 Sobic002G414600--Sobic006G275200 Sobic001G252300--Sobic002G414600 Sobic004G166700 Sobic004G166700 Sobic001G252300--Sobic004G166700 Sobic001G252300--Sobic005G051200 Sobic004G208700 Sobic004G208700 Sobic001G252300--Sobic004G208700 Sobic001G252300--Sobic001G317200 Sobic003G297600 Sobic003G297600 Sobic001G252300--Sobic003G297600 Sobic002G416600 Sobic002G416600 Sobic001G252300--Sobic002G416600 Sobic008G050600 Sobic008G050600 Sobic001G252300--Sobic008G050600 Sobic003G286600 Sobic003G286600 Sobic001G252300--Sobic003G286600 Sobic007G145600--Sobic001G317200 Sobic010G239300 Sobic010G239300 Sobic007G145600--Sobic010G239300 Sobic007G145600--Sobic001G339700 Sobic001G119100 Sobic001G119100 Sobic007G145600--Sobic001G119100 Sobic002G104900 Sobic002G104900 Sobic007G145600--Sobic002G104900 Sobic010G084400 Sobic010G084400 Sobic007G145600--Sobic010G084400 Sobic010G178500 Sobic010G178500 Sobic007G145600--Sobic010G178500 Sobic007G145600--Sobic001G252300 Sobic003G252800 Sobic003G252800 Sobic007G145600--Sobic003G252800 Sobic001G317200--Sobic005G051200 Sobic006G099900 Sobic006G099900 Sobic001G317200--Sobic006G099900 Sobic001G317200--Sobic003G252800 Sobic001G317200--Sobic010G084400 Sobic001G317200--Sobic003G286600 Sobic001G317200--Sobic008G050600 Sobic001G317200--Sobic003G240600 Sobic005G101800 Sobic005G101800 Sobic001G317200--Sobic005G101800 Sobic001G317200--Sobic002G416600 Sobic003G240600--Sobic001G317200 Sobic001G325000 Sobic001G325000 Sobic003G240600--Sobic001G325000 Sobic006G084600 Sobic006G084600 Sobic003G240600--Sobic006G084600 Sobic001G348700 Sobic001G348700 Sobic003G240600--Sobic001G348700 Sobic004G216600 Sobic004G216600 Sobic003G240600--Sobic004G216600 Sobic003G240600--Sobic003G252800 Sobic003G317100 Sobic003G317100 Sobic003G240600--Sobic003G317100 Sobic003G240600--Sobic002G414600 Sobic003G437200 Sobic003G437200 Sobic003G240600--Sobic003G437200 Sobic005G051200--Sobic001G317200 Sobic009G035200 Sobic009G035200 Sobic005G051200--Sobic009G035200 Sobic005G051200--Sobic008G050600 Sobic005G051200--Sobic002G416600 Sobic009G164600 Sobic009G164600 Sobic005G051200--Sobic009G164600 Sobic003G345100 Sobic003G345100 Sobic005G051200--Sobic003G345100 Sobic005G051200--Sobic003G286600 Sobic005G063100 Sobic005G063100 Sobic005G051200--Sobic005G063100 Sobic005G051200--Sobic001G252300 Sobic001G533400 Sobic001G533400 Sobic001G339700--Sobic001G533400 Sobic001G339700--Sobic001G317200 Sobic001G339700--Sobic007G145600 Sobic001G339700--Sobic010G084400 Sobic001G339700--Sobic003G252800 Sobic001G339700--Sobic006G099900 Sobic008G025600 Sobic008G025600 Sobic001G339700--Sobic008G025600 Sobic001G339700--Sobic005G101800 Sobic005G084600 Sobic005G084600 Sobic001G339700--Sobic005G084600 Sobic001G397200 Sobic001G397200 Sobic008G070350--Sobic001G397200 Sobic008G070350--Sobic009G035200 Sobic008G070350--Sobic005G051200 Sobic008G070350--Sobic005G103500 Sobic001G309600 Sobic001G309600 Sobic008G070350--Sobic001G309600 Sobic006G032700 Sobic006G032700 Sobic008G070350--Sobic006G032700 Sobic007G026600 Sobic007G026600 Sobic008G070350--Sobic007G026600 Sobic004G280200 Sobic004G280200 Sobic008G070350--Sobic004G280200 Sobic003G086600 Sobic003G086600 Sobic008G070350--Sobic003G086600
Octagon: transcription factors


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