Gene annotation
Transcriptome id Sobic.001G331200.1
Synonym AUR3, Gretchen Hagen3, GH3-2, YDK1, BRU6, GH3.2, Sb01g032020, SbGH3-2
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA and BR treatments" (PubMedID : 20499123)
OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed
UniProt C5WVN4
Pfam PF03321
Panther DB PTHR31901 PTHR31901:SF4
NCBI CDD -
KEGG Orthology K14487; auxin responsive GH3 gene family
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G37390 : Auxin-responsive GH3 family protein
RAP-DB (Rice) LOC_Os07g40290.1 : OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed
MaizeGDB (Corn) Zm00025a048626 , Zm00025a015690 , Zm00025a027437 , Zm00025a002969 , Zm00025a015082 , Zm00025a027255
Brachypodium KQK15444 , KQK09904 , KQJ88359
Barley HORVU3Hr1G074230.1 , HORVU3Hr1G074230.3 , HORVU3Hr1G074230.2 , HORVU2Hr1G034670.4 , HORVU2Hr1G034670.5 , HORVU2Hr1G034670.6 , HORVU2Hr1G034670.1 , HORVU2Hr1G034670.2 , HORVU2Hr1G034670.3 , HORVU2Hr1G088460.4 , HORVU2Hr1G088460.2 , HORVU2Hr1G088460.3 , HORVU2Hr1G088460.1
Wheat TraesCS2B02G161700 , TraesCS3A02G301200 , TraesCS2D02G140800 , TraesCS3B02G335300 , TraesCS3D02G300600 , TraesCS2D02G191800 , TraesCS2A02G183900 , TraesCS2B02G210600 , TraesCS2A02G137800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G148200 Cupin domain containing protein, expressed -
2 Sobic.006G268800 transporter family protein, putative, expressed -
3 Sobic.002G017800 expressed protein -
4 Sobic.007G227300 plastocyanin-like domain containing protein, putative, expressed -
5 Sobic.002G247600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Os9bglu30 - beta-glucosidase, similar to Os4bglu12 exoglucanase, expressed K01188: beta-glucosidase
6 Sobic.006G103000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.009G111000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pectinesterase, putative, expressed K01051: pectinesterase
8 Sobic.001G318500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
9 Sobic.005G091500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@permease domain containing protein, putative, expressed K06901: putative MFS transporter, AGZA family, xanthine/uracil permease
10 Sobic.001G325400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
11 Sobic.001G367600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.002G055700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
13 Sobic.004G205100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase
14 Sobic.001G500000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.001G462700 expressed protein -
16 Sobic.010G211900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GDSL-like lipase/acylhydrolase, putative, expressed -
17 Sobic.003G007600 expressed protein -
18 Sobic.005G029200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calmodulin-like protein 1, putative, expressed K13448: calcium-binding protein CML
19 Sobic.003G303100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dynein light chain type 1 domain containing protein, expressed K10418: dynein light chain LC8-type
20 Sobic.006G039100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RALFL36 - Rapid ALkalinization Factor RALF family protein precursor, expressed -


Gene co-expression network
sample Sobic001G331200 Sobic001G331200 Sobic004G148200 Sobic004G148200 Sobic001G331200--Sobic004G148200 Sobic006G268800 Sobic006G268800 Sobic001G331200--Sobic006G268800 Sobic002G017800 Sobic002G017800 Sobic001G331200--Sobic002G017800 Sobic007G227300 Sobic007G227300 Sobic001G331200--Sobic007G227300 Sobic002G247600 Sobic002G247600 Sobic001G331200--Sobic002G247600 Sobic006G103000 Sobic006G103000 Sobic001G331200--Sobic006G103000 Sobic009G111000 Sobic009G111000 Sobic001G331200--Sobic009G111000 Sobic001G318500 Sobic001G318500 Sobic001G331200--Sobic001G318500 Sobic005G091500 Sobic005G091500 Sobic001G331200--Sobic005G091500 Sobic005G029200 Sobic005G029200 Sobic004G148200--Sobic005G029200 Sobic002G055700 Sobic002G055700 Sobic004G148200--Sobic002G055700 Sobic004G189500 Sobic004G189500 Sobic004G148200--Sobic004G189500 Sobic004G148200--Sobic007G227300 Sobic004G189400 Sobic004G189400 Sobic004G148200--Sobic004G189400 Sobic003G303100 Sobic003G303100 Sobic004G148200--Sobic003G303100 Sobic004G148200--Sobic006G268800 Sobic009G145500 Sobic009G145500 Sobic004G148200--Sobic009G145500 Sobic003G200700 Sobic003G200700 Sobic004G148200--Sobic003G200700 Sobic006G268800--Sobic006G103000 Sobic006G268800--Sobic007G227300 Sobic006G268800--Sobic003G200700 Sobic006G268800--Sobic004G148200 Sobic001G402200 Sobic001G402200 Sobic006G268800--Sobic001G402200 Sobic010G211900 Sobic010G211900 Sobic006G268800--Sobic010G211900 Sobic001G318600 Sobic001G318600 Sobic006G268800--Sobic001G318600 Sobic006G268800--Sobic009G145500 Sobic006G268800--Sobic001G331200 Sobic001G367600 Sobic001G367600 Sobic002G017800--Sobic001G367600 Sobic002G017800--Sobic009G111000 Sobic002G017800--Sobic001G318500 Sobic005G018700 Sobic005G018700 Sobic002G017800--Sobic005G018700 Sobic009G077800 Sobic009G077800 Sobic002G017800--Sobic009G077800 Sobic002G017800--Sobic002G055700 Sobic001G325400 Sobic001G325400 Sobic002G017800--Sobic001G325400 Sobic002G017800--Sobic006G103000 Sobic001G500000 Sobic001G500000 Sobic002G017800--Sobic001G500000 Sobic006G099900 Sobic006G099900 Sobic007G227300--Sobic006G099900 Sobic007G227300--Sobic003G200700 Sobic001G400800 Sobic001G400800 Sobic007G227300--Sobic001G400800 Sobic003G252800 Sobic003G252800 Sobic007G227300--Sobic003G252800 Sobic007G227300--Sobic006G268800 Sobic006G277600 Sobic006G277600 Sobic007G227300--Sobic006G277600 Sobic007G227300--Sobic004G148200 Sobic009G240600 Sobic009G240600 Sobic007G227300--Sobic009G240600 Sobic005G206601 Sobic005G206601 Sobic007G227300--Sobic005G206601 Sobic001G462700 Sobic001G462700 Sobic002G247600--Sobic001G462700 Sobic010G185000 Sobic010G185000 Sobic002G247600--Sobic010G185000 Sobic009G003600 Sobic009G003600 Sobic002G247600--Sobic009G003600 Sobic004G348400 Sobic004G348400 Sobic002G247600--Sobic004G348400 Sobic002G247600--Sobic001G331200 Sobic001G333400 Sobic001G333400 Sobic002G247600--Sobic001G333400 Sobic007G151300 Sobic007G151300 Sobic002G247600--Sobic007G151300 Sobic002G247600--Sobic005G206601 Sobic003G117600 Sobic003G117600 Sobic002G247600--Sobic003G117600 Sobic006G103000--Sobic001G402200 Sobic006G103000--Sobic006G268800 Sobic001G231700 Sobic001G231700 Sobic006G103000--Sobic001G231700 Sobic006G103000--Sobic001G367600 Sobic006G103000--Sobic009G240600 Sobic006G103000--Sobic010G211900 Sobic003G007600 Sobic003G007600 Sobic006G103000--Sobic003G007600 Sobic006G103000--Sobic007G227300 Sobic006G103000--Sobic001G500000 Sobic009G111000--Sobic002G017800 Sobic002G176100 Sobic002G176100 Sobic009G111000--Sobic002G176100 Sobic009G111000--Sobic001G367600 Sobic003G417200 Sobic003G417200 Sobic009G111000--Sobic003G417200 Sobic009G111000--Sobic001G325400 Sobic003G426400 Sobic003G426400 Sobic009G111000--Sobic003G426400 Sobic009G111000--Sobic002G055700 Sobic009G111000--Sobic001G500000 Sobic003G319500 Sobic003G319500 Sobic009G111000--Sobic003G319500 Sobic002G004900 Sobic002G004900 Sobic001G318500--Sobic002G004900 Sobic001G318500--Sobic002G017800 Sobic001G318500--Sobic009G111000 Sobic002G302500 Sobic002G302500 Sobic001G318500--Sobic002G302500 Sobic001G318500--Sobic002G055700 Sobic004G203700 Sobic004G203700 Sobic001G318500--Sobic004G203700 Sobic001G318500--Sobic004G148200 Sobic001G318500--Sobic001G367600 Sobic008G027600 Sobic008G027600 Sobic001G318500--Sobic008G027600 Sobic005G091500--Sobic004G189400 Sobic004G237800 Sobic004G237800 Sobic005G091500--Sobic004G237800 Sobic005G063100 Sobic005G063100 Sobic005G091500--Sobic005G063100 Sobic008G050600 Sobic008G050600 Sobic005G091500--Sobic008G050600 Sobic005G091500--Sobic002G055700 Sobic005G091500--Sobic006G099900 Sobic003G382600 Sobic003G382600 Sobic005G091500--Sobic003G382600 Sobic009G159400 Sobic009G159400 Sobic005G091500--Sobic009G159400 Sobic003G286600 Sobic003G286600 Sobic005G091500--Sobic003G286600
Octagon: transcription factors


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