Gene annotation
Transcriptome id Sobic.003G199700.1
Synonym Sb03g026200
Functional annotation mTERF family protein, expressed
UniProt C5XPE9
Pfam PF02536
Panther DB PTHR13068 PTHR13068:SF35
NCBI CDD -
KEGG Orthology K15032; mTERF domain-containing protein, mitochondrial
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005739mitochondrion GO:0003690double-stranded DNA binding


Orthologs (automatic annotation)
TAIR AT5G07900 : Mitochondrial transcription termination factor family protein
RAP-DB (Rice) LOC_Os06g12100.1 : mTERF family protein, expressed
MaizeGDB (Corn) Zm00025a026349
Brachypodium KQK01897
Barley HORVU0Hr1G017090.4 , HORVU0Hr1G017090.1 , HORVU0Hr1G017090.3 , HORVU0Hr1G017090.2 , HORVU7Hr1G037560.2
Wheat TraesCS6B02G333200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G245700 COP9 signalosome complex subunit 5b, putative, expressed K09613: COPS5, COP9 signalosome complex subunit 5
2 Sobic.001G033000 ribosomal RNA large subunit methyltransferase J, putative, expressed -
3 Sobic.004G212700 RNA recognition motif containing protein, putative, expressed K12883: NCBP2, nuclear cap-binding protein subunit 2
4 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
5 Sobic.001G436300 nucleotide-sensitive chloride conductance regulator containing protein, expressed K05019: chloride channel, nucleotide-sensitive, 1A
6 Sobic.006G127500 DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed K03013: RPB5, DNA-directed RNA polymerases I, II, and III subunit RPABC1
7 Sobic.002G365900 WD repeat-containing protein 12, putative, expressed K14863: WDR12, ribosome biogenesis protein
8 Sobic.004G343200 dehydrogenase, putative, expressed K00121: frmA, ADH5, S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase
9 Sobic.004G173100 exosome complex exonuclease, putative, expressed K03678: RRP45, exosome complex component RRP45
10 Sobic.002G394800 SWIB/MDM2 domain containing protein, expressed K11650: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
11 Sobic.004G249300 proteasome subunit, putative, expressed K15030: translation initiation factor 3 subunit M
12 Sobic.003G274400 WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
13 Sobic.007G134100 expressed protein -
14 Sobic.006G272200 cleavage and polyadenylation specificity factor subunit 5, putative, expressed K14397: NUDT21, CPSF5, cleavage and polyadenylation specificity factor subunit 5
15 Sobic.002G394600 peptidase, T1 family, putative, expressed K02727: 20S proteasome subunit alpha 7
16 Sobic.001G008500 metallo-beta-lactamase, putative, expressed K14403: CPSF3, cleavage and polyadenylation specificity factor subunit 3
17 Sobic.001G061800 RFC3 - Putative clamp loader of PCNA, replication factor C subunit 3, expressed K10756: replication factor C subunit 3/5
18 Sobic.007G217400 COP9 signalosome complex subunit 6a, putative, expressed K12179: COPS6, COP9 signalosome complex subunit 6
19 Sobic.009G071700 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
20 Sobic.006G079900 COP9 signalosome complex subunit 8, putative, expressed K12181: COPS8, COP9 signalosome complex subunit 8


Gene co-expression network
sample Sobic003G199700 Sobic003G199700 Sobic006G245700 Sobic006G245700 Sobic003G199700--Sobic006G245700 Sobic001G033000 Sobic001G033000 Sobic003G199700--Sobic001G033000 Sobic004G212700 Sobic004G212700 Sobic003G199700--Sobic004G212700 Sobic006G251600 Sobic006G251600 Sobic003G199700--Sobic006G251600 Sobic001G436300 Sobic001G436300 Sobic003G199700--Sobic001G436300 Sobic006G127500 Sobic006G127500 Sobic003G199700--Sobic006G127500 Sobic002G365900 Sobic002G365900 Sobic003G199700--Sobic002G365900 Sobic004G343200 Sobic004G343200 Sobic003G199700--Sobic004G343200 Sobic004G173100 Sobic004G173100 Sobic003G199700--Sobic004G173100 Sobic004G256300 Sobic004G256300 Sobic006G245700--Sobic004G256300 Sobic001G370300 Sobic001G370300 Sobic006G245700--Sobic001G370300 Sobic008G125000 Sobic008G125000 Sobic006G245700--Sobic008G125000 Sobic003G274400 Sobic003G274400 Sobic006G245700--Sobic003G274400 Sobic001G115500 Sobic001G115500 Sobic006G245700--Sobic001G115500 Sobic002G394800 Sobic002G394800 Sobic006G245700--Sobic002G394800 Sobic006G245700--Sobic001G436300 Sobic003G221500 Sobic003G221500 Sobic006G245700--Sobic003G221500 Sobic001G157600 Sobic001G157600 Sobic006G245700--Sobic001G157600 Sobic004G287100 Sobic004G287100 Sobic001G033000--Sobic004G287100 Sobic001G033000--Sobic006G245700 Sobic005G120700 Sobic005G120700 Sobic001G033000--Sobic005G120700 Sobic001G033000--Sobic003G199700 Sobic001G107300 Sobic001G107300 Sobic001G033000--Sobic001G107300 Sobic001G033000--Sobic006G251600 Sobic007G209600 Sobic007G209600 Sobic001G033000--Sobic007G209600 Sobic001G033000--Sobic006G127500 Sobic001G061800 Sobic001G061800 Sobic001G033000--Sobic001G061800 Sobic004G129600 Sobic004G129600 Sobic004G212700--Sobic004G129600 Sobic004G206300 Sobic004G206300 Sobic004G212700--Sobic004G206300 Sobic004G019600 Sobic004G019600 Sobic004G212700--Sobic004G019600 Sobic004G212700--Sobic006G245700 Sobic001G346300 Sobic001G346300 Sobic004G212700--Sobic001G346300 Sobic004G212700--Sobic003G274400 Sobic010G154000 Sobic010G154000 Sobic004G212700--Sobic010G154000 Sobic004G212700--Sobic002G394800 Sobic004G198900 Sobic004G198900 Sobic004G212700--Sobic004G198900 Sobic009G071700 Sobic009G071700 Sobic006G251600--Sobic009G071700 Sobic006G251600--Sobic002G365900 Sobic006G225400 Sobic006G225400 Sobic006G251600--Sobic006G225400 Sobic001G008500 Sobic001G008500 Sobic006G251600--Sobic001G008500 Sobic008G083400 Sobic008G083400 Sobic006G251600--Sobic008G083400 Sobic006G198600 Sobic006G198600 Sobic006G251600--Sobic006G198600 Sobic010G205900 Sobic010G205900 Sobic006G251600--Sobic010G205900 Sobic006G251600--Sobic004G173100 Sobic001G371100 Sobic001G371100 Sobic006G251600--Sobic001G371100 Sobic001G436300--Sobic006G127500 Sobic001G235700 Sobic001G235700 Sobic001G436300--Sobic001G235700 Sobic001G436300--Sobic001G115500 Sobic001G436300--Sobic003G274400 Sobic001G436300--Sobic001G008500 Sobic001G436300--Sobic006G245700 Sobic004G343600 Sobic004G343600 Sobic001G436300--Sobic004G343600 Sobic002G317600 Sobic002G317600 Sobic001G436300--Sobic002G317600 Sobic001G097400 Sobic001G097400 Sobic001G436300--Sobic001G097400 Sobic006G127500--Sobic001G436300 Sobic006G127500--Sobic001G157600 Sobic006G127500--Sobic006G251600 Sobic003G028400 Sobic003G028400 Sobic006G127500--Sobic003G028400 Sobic003G098200 Sobic003G098200 Sobic006G127500--Sobic003G098200 Sobic006G127500--Sobic004G343600 Sobic006G127500--Sobic001G097400 Sobic006G127500--Sobic001G235700 Sobic006G127500--Sobic001G107300 Sobic002G365900--Sobic006G251600 Sobic003G008600 Sobic003G008600 Sobic002G365900--Sobic003G008600 Sobic002G365900--Sobic001G008500 Sobic002G423500 Sobic002G423500 Sobic002G365900--Sobic002G423500 Sobic002G365900--Sobic009G071700 Sobic004G252000 Sobic004G252000 Sobic002G365900--Sobic004G252000 Sobic001G488100 Sobic001G488100 Sobic002G365900--Sobic001G488100 Sobic002G365900--Sobic010G205900 Sobic002G365900--Sobic004G173100 Sobic007G051400 Sobic007G051400 Sobic004G343200--Sobic007G051400 Sobic003G311500 Sobic003G311500 Sobic004G343200--Sobic003G311500 Sobic003G360300 Sobic003G360300 Sobic004G343200--Sobic003G360300 Sobic004G343200--Sobic007G209600 Sobic004G343200--Sobic001G488100 Sobic006G255900 Sobic006G255900 Sobic004G343200--Sobic006G255900 Sobic001G229300 Sobic001G229300 Sobic004G343200--Sobic001G229300 Sobic004G342300 Sobic004G342300 Sobic004G343200--Sobic004G342300 Sobic009G176700 Sobic009G176700 Sobic004G343200--Sobic009G176700 Sobic004G173100--Sobic009G071700 Sobic004G173100--Sobic006G251600 Sobic003G425100 Sobic003G425100 Sobic004G173100--Sobic003G425100 Sobic002G262100 Sobic002G262100 Sobic004G173100--Sobic002G262100 Sobic004G173100--Sobic006G198600 Sobic002G399200 Sobic002G399200 Sobic004G173100--Sobic002G399200 Sobic003G407600 Sobic003G407600 Sobic004G173100--Sobic003G407600 Sobic005G100900 Sobic005G100900 Sobic004G173100--Sobic005G100900 Sobic008G163500 Sobic008G163500 Sobic004G173100--Sobic008G163500
Octagon: transcription factors


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