Gene annotation
Transcriptome id Sobic.007G004200.1
Synonym
Functional annotation PHD-finger domain containing protein, putative, expressed
UniProt A0A1B6PER6
Pfam PF00628
Panther DB PTHR10615 PTHR10615:SF100
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G77250 : RING/FYVE/PHD-type zinc finger family protein
RAP-DB (Rice) LOC_Os08g01420.1 : PHD-finger domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a040139 , Zm00025a030318
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G021200 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
2 Sobic.001G542900 uncharacterized Cys-rich domain containing protein, putative, expressed -
3 Sobic.004G335000 26S protease regulatory subunit 6A, putative, expressed K03065: PSMC3, 26S proteasome regulatory subunit T5
4 Sobic.002G177700 acetyltransferase type B catalytic subunit, putative, expressed K11303: HAT1, histone acetyltransferase 1
5 Sobic.001G315500 ethylene-responsive element-binding protein, putative, expressed -
6 Sobic.001G010700 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5
7 Sobic.010G213200 WD domain, G-beta repeat domain containing protein, expressed K12857: SNRNP40, Prp8 binding protein
8 Sobic.006G252200 MEE34, putative, expressed K03038: PSMD7, 26S proteasome regulatory subunit N8
9 Sobic.007G196500 SAM domain containing protein, putative, expressed -
10 Sobic.007G176200 26S proteasome non-ATPase regulatory subunit 3, putative, expressed K03033: PSMD3, 26S proteasome regulatory subunit N3
11 Sobic.001G444300 expressed protein -
12 Sobic.004G054300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
13 Sobic.002G428200 26S protease regulatory subunit 4, putative, expressed K03062: PSMC1, 26S proteasome regulatory subunit T2
14 Sobic.004G318200 expressed protein -
15 Sobic.003G161600 dephospho-CoA kinase, putative, expressed K00859: dephospho-CoA kinase
16 Sobic.003G092700 xylosyltransferase, putative, expressed -
17 Sobic.001G458700 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
18 Sobic.007G217400 COP9 signalosome complex subunit 6a, putative, expressed K12179: COPS6, COP9 signalosome complex subunit 6
19 Sobic.010G210000 ubiquitin family protein, putative, expressed K12158: ubiquitin-like protein Nedd8
20 Sobic.003G043400 syntaxin, putative, expressed K08490: syntaxin 5


Gene co-expression network
sample Sobic007G004200 Sobic007G004200 Sobic003G021200 Sobic003G021200 Sobic007G004200--Sobic003G021200 Sobic001G542900 Sobic001G542900 Sobic007G004200--Sobic001G542900 Sobic004G335000 Sobic004G335000 Sobic007G004200--Sobic004G335000 Sobic002G177700 Sobic002G177700 Sobic007G004200--Sobic002G177700 Sobic001G315500 Sobic001G315500 Sobic007G004200--Sobic001G315500 Sobic001G010700 Sobic001G010700 Sobic007G004200--Sobic001G010700 Sobic010G213200 Sobic010G213200 Sobic007G004200--Sobic010G213200 Sobic006G252200 Sobic006G252200 Sobic007G004200--Sobic006G252200 Sobic007G196500 Sobic007G196500 Sobic007G004200--Sobic007G196500 Sobic003G021200--Sobic001G010700 Sobic006G222400 Sobic006G222400 Sobic003G021200--Sobic006G222400 Sobic010G017000 Sobic010G017000 Sobic003G021200--Sobic010G017000 Sobic003G043400 Sobic003G043400 Sobic003G021200--Sobic003G043400 Sobic003G021200--Sobic004G335000 Sobic001G402300 Sobic001G402300 Sobic003G021200--Sobic001G402300 Sobic002G428200 Sobic002G428200 Sobic003G021200--Sobic002G428200 Sobic010G238700 Sobic010G238700 Sobic003G021200--Sobic010G238700 Sobic006G127000 Sobic006G127000 Sobic003G021200--Sobic006G127000 Sobic007G217400 Sobic007G217400 Sobic001G542900--Sobic007G217400 Sobic002G423800 Sobic002G423800 Sobic001G542900--Sobic002G423800 Sobic001G542900--Sobic004G335000 Sobic008G110500 Sobic008G110500 Sobic001G542900--Sobic008G110500 Sobic001G542900--Sobic003G043400 Sobic001G444300 Sobic001G444300 Sobic001G542900--Sobic001G444300 Sobic002G141700 Sobic002G141700 Sobic001G542900--Sobic002G141700 Sobic009G164700 Sobic009G164700 Sobic001G542900--Sobic009G164700 Sobic007G176200 Sobic007G176200 Sobic001G542900--Sobic007G176200 Sobic004G335000--Sobic002G428200 Sobic004G335000--Sobic007G176200 Sobic004G335000--Sobic001G010700 Sobic002G257400 Sobic002G257400 Sobic004G335000--Sobic002G257400 Sobic004G335000--Sobic006G252200 Sobic001G236300 Sobic001G236300 Sobic004G335000--Sobic001G236300 Sobic001G461900 Sobic001G461900 Sobic004G335000--Sobic001G461900 Sobic001G058100 Sobic001G058100 Sobic004G335000--Sobic001G058100 Sobic007G045600 Sobic007G045600 Sobic004G335000--Sobic007G045600 Sobic002G177700--Sobic007G176200 Sobic007G044400 Sobic007G044400 Sobic002G177700--Sobic007G044400 Sobic009G104100 Sobic009G104100 Sobic002G177700--Sobic009G104100 Sobic003G261800 Sobic003G261800 Sobic002G177700--Sobic003G261800 Sobic002G177700--Sobic006G252200 Sobic002G177700--Sobic007G004200 Sobic002G177700--Sobic001G542900 Sobic006G126000 Sobic006G126000 Sobic002G177700--Sobic006G126000 Sobic010G040900 Sobic010G040900 Sobic002G177700--Sobic010G040900 Sobic001G502200 Sobic001G502200 Sobic001G315500--Sobic001G502200 Sobic003G124800 Sobic003G124800 Sobic001G315500--Sobic003G124800 Sobic010G065400 Sobic010G065400 Sobic001G315500--Sobic010G065400 Sobic008G137600 Sobic008G137600 Sobic001G315500--Sobic008G137600 Sobic004G224900 Sobic004G224900 Sobic001G315500--Sobic004G224900 Sobic001G315500--Sobic002G428200 Sobic001G315500--Sobic006G252200 Sobic003G330500 Sobic003G330500 Sobic001G315500--Sobic003G330500 Sobic003G362400 Sobic003G362400 Sobic001G315500--Sobic003G362400 Sobic001G010700--Sobic007G176200 Sobic001G010700--Sobic006G252200 Sobic001G458700 Sobic001G458700 Sobic001G010700--Sobic001G458700 Sobic001G010700--Sobic003G330500 Sobic001G010700--Sobic004G335000 Sobic001G010700--Sobic002G428200 Sobic001G010700--Sobic004G224900 Sobic001G010700--Sobic003G043400 Sobic001G010700--Sobic002G423800 Sobic004G062400 Sobic004G062400 Sobic010G213200--Sobic004G062400 Sobic001G481700 Sobic001G481700 Sobic010G213200--Sobic001G481700 Sobic010G100000 Sobic010G100000 Sobic010G213200--Sobic010G100000 Sobic007G152400 Sobic007G152400 Sobic010G213200--Sobic007G152400 Sobic005G050500 Sobic005G050500 Sobic010G213200--Sobic005G050500 Sobic010G213200--Sobic002G428200 Sobic010G213200--Sobic002G257400 Sobic001G517600 Sobic001G517600 Sobic010G213200--Sobic001G517600 Sobic010G213200--Sobic004G224900 Sobic006G252200--Sobic007G176200 Sobic006G252200--Sobic001G458700 Sobic006G252200--Sobic004G224900 Sobic006G252200--Sobic001G010700 Sobic006G252200--Sobic003G330500 Sobic006G252200--Sobic002G428200 Sobic004G138800 Sobic004G138800 Sobic006G252200--Sobic004G138800 Sobic001G283200 Sobic001G283200 Sobic006G252200--Sobic001G283200 Sobic001G096100 Sobic001G096100 Sobic006G252200--Sobic001G096100 Sobic007G196500--Sobic007G004200 Sobic001G415000 Sobic001G415000 Sobic007G196500--Sobic001G415000 Sobic007G196500--Sobic003G043400 Sobic009G191600 Sobic009G191600 Sobic007G196500--Sobic009G191600 Sobic003G410400 Sobic003G410400 Sobic007G196500--Sobic003G410400 Sobic007G196500--Sobic001G542900 Sobic004G059900 Sobic004G059900 Sobic007G196500--Sobic004G059900 Sobic007G196500--Sobic010G017000 Sobic007G196500--Sobic006G127000
Octagon: transcription factors


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