Gene annotation
Transcriptome id Sobic.009G231700.1
Synonym Sb09g028440
Functional annotation GTP binding protein, putative, expressed
UniProt C5YVJ3
Pfam PF02841 PF02263
Panther DB PTHR10751 PTHR10751:SF44
NCBI CDD KOG2037; Guanylate-binding protein
KEGG Orthology -
Gene Ontology GO:0005525; GTP binding GO:0003924GTPase activity


Orthologs (automatic annotation)
TAIR AT5G46070 : Guanylate-binding family protein
RAP-DB (Rice) LOC_Os02g20410.1 : GTP binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a054943 , Zm00025a053498 , Zm00025a036602 , Zm00025a050968 , Zm00025a044562
Brachypodium KQK04893 , KQK04894
Barley HORVU1Hr1G087340.1 , HORVU1Hr1G087340.3 , HORVU1Hr1G087340.2 , HORVU1Hr1G087340.5 , HORVU1Hr1G087340.4 , HORVU1Hr1G087340.7 , HORVU1Hr1G087340.6 , HORVU1Hr1G087340.8
Wheat TraesCS1A02G396000 , TraesCS1A02G396000 , TraesCS1B02G424400 , TraesCS1B02G424400 , TraesCS1D02G404000 , TraesCS1D02G404000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G020700 WD domain, G-beta repeat domain containing protein, expressed K14018: PLAA, DOA1, phospholipase A-2-activating protein
2 Sobic.003G099300 expressed protein K18749: LSM14, RAP55, protein LSM14
3 Sobic.007G177300 kinetochore protein, putative, expressed K11547: NDC80, HEC1, kinetochore protein NDC80
4 Sobic.002G423500 T-complex protein, putative, expressed K09498: T-complex protein 1 subunit zeta
5 Sobic.K004100 zinc finger, C3HC4 type domain containing protein, expressed -
6 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
7 Sobic.001G382600 expressed protein -
8 Sobic.001G118200 CASP, putative, expressed K09313: homeobox protein cut-like
9 Sobic.010G269100 zinc finger family protein, putative, expressed -
10 Sobic.003G259400 katanin p60 ATPase-containing subunit, putative, expressed K07767: katanin p60 ATPase-containing subunit A1
11 Sobic.002G014400 T-complex protein, putative, expressed K09497: T-complex protein 1 subunit epsilon
12 Sobic.005G115500 bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed K13998: dihydrofolate reductase / thymidylate synthase
13 Sobic.005G163700 T-complex protein, putative, expressed K09500: T-complex protein 1 subunit theta
14 Sobic.005G216300 RNA recognition motif containing protein, expressed K12837: splicing factor U2AF 65 kDa subunit
15 Sobic.003G379200 wound-responsive family protein, putative, expressed -
16 Sobic.006G010000 NLI interacting factor-like phosphatase, putative, expressed K17616: CTD small phosphatase-like protein 2
17 Sobic.002G412700 histone-arginine methyltransferase CARM1, putative, expressed K05931: CARM1, type I protein arginine methyltransferase
18 Sobic.008G103300 vacuolar protein sorting-associated protein 26, putative, expressed K18466: vacuolar protein sorting-associated protein 26
19 Sobic.006G056200 transport protein particle component, Bet3, domain containing protein, expressed -
20 Sobic.003G029600 coatomer alpha subunit, putative, expressed K05236: COPA, coatomer subunit alpha


Gene co-expression network
sample Sobic009G231700 Sobic009G231700 Sobic002G020700 Sobic002G020700 Sobic009G231700--Sobic002G020700 Sobic003G099300 Sobic003G099300 Sobic009G231700--Sobic003G099300 Sobic007G177300 Sobic007G177300 Sobic009G231700--Sobic007G177300 Sobic002G423500 Sobic002G423500 Sobic009G231700--Sobic002G423500 SobicK004100 SobicK004100 Sobic009G231700--SobicK004100 Sobic004G039600 Sobic004G039600 Sobic009G231700--Sobic004G039600 Sobic001G382600 Sobic001G382600 Sobic009G231700--Sobic001G382600 Sobic001G118200 Sobic001G118200 Sobic009G231700--Sobic001G118200 Sobic010G269100 Sobic010G269100 Sobic009G231700--Sobic010G269100 Sobic010G020400 Sobic010G020400 Sobic002G020700--Sobic010G020400 Sobic008G085700 Sobic008G085700 Sobic002G020700--Sobic008G085700 Sobic008G055900 Sobic008G055900 Sobic002G020700--Sobic008G055900 Sobic001G333100 Sobic001G333100 Sobic002G020700--Sobic001G333100 Sobic010G223300 Sobic010G223300 Sobic002G020700--Sobic010G223300 Sobic001G449900 Sobic001G449900 Sobic002G020700--Sobic001G449900 Sobic002G020700--Sobic004G039600 Sobic008G082500 Sobic008G082500 Sobic002G020700--Sobic008G082500 Sobic007G054800 Sobic007G054800 Sobic002G020700--Sobic007G054800 Sobic003G099300--Sobic010G269100 Sobic003G099300--Sobic004G039600 Sobic005G216300 Sobic005G216300 Sobic003G099300--Sobic005G216300 Sobic003G099300--SobicK004100 Sobic001G369000 Sobic001G369000 Sobic003G099300--Sobic001G369000 Sobic005G115500 Sobic005G115500 Sobic003G099300--Sobic005G115500 Sobic002G256200 Sobic002G256200 Sobic003G099300--Sobic002G256200 Sobic006G056200 Sobic006G056200 Sobic003G099300--Sobic006G056200 Sobic003G099300--Sobic009G231700 Sobic008G129600 Sobic008G129600 Sobic007G177300--Sobic008G129600 Sobic001G467100 Sobic001G467100 Sobic007G177300--Sobic001G467100 Sobic007G177300--Sobic009G231700 Sobic007G177300--Sobic001G382600 Sobic007G177300--Sobic010G020400 Sobic002G394600 Sobic002G394600 Sobic007G177300--Sobic002G394600 Sobic009G077600 Sobic009G077600 Sobic007G177300--Sobic009G077600 Sobic002G014400 Sobic002G014400 Sobic007G177300--Sobic002G014400 Sobic008G103300 Sobic008G103300 Sobic007G177300--Sobic008G103300 Sobic005G163700 Sobic005G163700 Sobic002G423500--Sobic005G163700 Sobic004G047200 Sobic004G047200 Sobic002G423500--Sobic004G047200 Sobic002G423500--Sobic002G014400 Sobic001G460500 Sobic001G460500 Sobic002G423500--Sobic001G460500 Sobic004G326600 Sobic004G326600 Sobic002G423500--Sobic004G326600 Sobic004G215700 Sobic004G215700 Sobic002G423500--Sobic004G215700 Sobic001G522000 Sobic001G522000 Sobic002G423500--Sobic001G522000 Sobic006G041100 Sobic006G041100 Sobic002G423500--Sobic006G041100 Sobic002G423500--Sobic001G467100 SobicK004100--Sobic001G369000 SobicK004100--Sobic004G039600 SobicK004100--Sobic003G099300 Sobic001G335900 Sobic001G335900 SobicK004100--Sobic001G335900 Sobic007G120500 Sobic007G120500 SobicK004100--Sobic007G120500 Sobic009G049400 Sobic009G049400 SobicK004100--Sobic009G049400 Sobic003G240700 Sobic003G240700 SobicK004100--Sobic003G240700 Sobic009G226400 Sobic009G226400 SobicK004100--Sobic009G226400 SobicK004100--Sobic001G449900 Sobic006G012500 Sobic006G012500 Sobic004G039600--Sobic006G012500 Sobic004G039600--Sobic001G369000 Sobic007G132100 Sobic007G132100 Sobic004G039600--Sobic007G132100 Sobic008G099800 Sobic008G099800 Sobic004G039600--Sobic008G099800 Sobic006G126100 Sobic006G126100 Sobic004G039600--Sobic006G126100 Sobic010G053800 Sobic010G053800 Sobic004G039600--Sobic010G053800 Sobic006G131000 Sobic006G131000 Sobic004G039600--Sobic006G131000 Sobic001G534800 Sobic001G534800 Sobic004G039600--Sobic001G534800 Sobic004G039600--Sobic007G120500 Sobic002G299000 Sobic002G299000 Sobic001G382600--Sobic002G299000 Sobic002G008800 Sobic002G008800 Sobic001G382600--Sobic002G008800 Sobic001G065100 Sobic001G065100 Sobic001G382600--Sobic001G065100 Sobic001G382600--Sobic001G118200 Sobic002G111600 Sobic002G111600 Sobic001G382600--Sobic002G111600 Sobic003G337300 Sobic003G337300 Sobic001G382600--Sobic003G337300 Sobic001G382600--Sobic002G020700 Sobic001G382600--Sobic008G055900 Sobic001G382600--Sobic006G131000 Sobic001G118200--Sobic001G382600 Sobic001G118200--Sobic002G020700 Sobic010G000800 Sobic010G000800 Sobic001G118200--Sobic010G000800 Sobic009G003700 Sobic009G003700 Sobic001G118200--Sobic009G003700 Sobic004G053500 Sobic004G053500 Sobic001G118200--Sobic004G053500 Sobic004G223300 Sobic004G223300 Sobic001G118200--Sobic004G223300 Sobic008G124800 Sobic008G124800 Sobic001G118200--Sobic008G124800 Sobic001G117800 Sobic001G117800 Sobic001G118200--Sobic001G117800 Sobic002G340900 Sobic002G340900 Sobic001G118200--Sobic002G340900 Sobic010G269100--Sobic003G099300 Sobic010G269100--Sobic002G256200 Sobic008G092300 Sobic008G092300 Sobic010G269100--Sobic008G092300 Sobic010G269100--Sobic006G056200 Sobic010G239800 Sobic010G239800 Sobic010G269100--Sobic010G239800 Sobic002G268400 Sobic002G268400 Sobic010G269100--Sobic002G268400 Sobic006G278700 Sobic006G278700 Sobic010G269100--Sobic006G278700 Sobic010G085200 Sobic010G085200 Sobic010G269100--Sobic010G085200 Sobic009G033900 Sobic009G033900 Sobic010G269100--Sobic009G033900
Octagon: transcription factors


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