Gene annotation
Transcriptome id Sobic.002G235300.1,Sobic.002G235300.2
Synonym Sb02g027400
Functional annotation expressed protein
UniProt C5X337
Pfam -
Panther DB PTHR36078 PTHR36078:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os08g38010.1 : expressed protein
MaizeGDB (Corn) Zm00025a014135
Brachypodium -
Barley HORVU5Hr1G070560.4 , HORVU5Hr1G070560.3 , HORVU5Hr1G070560.2 , HORVU5Hr1G070560.1
Wheat TraesCS5A02G250300 , TraesCS5A02G250700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G113800 CGMC_GSK.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K03083: glycogen synthase kinase 3 beta
K00924: kinase
2 Sobic.002G083900 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
3 Sobic.003G259400 katanin p60 ATPase-containing subunit, putative, expressed K07767: katanin p60 ATPase-containing subunit A1
4 Sobic.001G422700 "similar to Zinc finger family protein, putative, expressed"(PubMedID : 29862293)@Salt and drought-induced ring finger 1(PubMedID : 26320239)@zinc finger, C3HC4 type domain containing protein, expressed K16283: E3 ubiquitin-protein ligase SDIR1
5 Sobic.002G071000 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
6 Sobic.006G010000 NLI interacting factor-like phosphatase, putative, expressed K17616: CTD small phosphatase-like protein 2
7 Sobic.004G279100 CAMK_CAMK_like.15 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
8 Sobic.004G287900 LYR motif containing protein, putative, expressed -
9 Sobic.001G069600 ad-003, putative, expressed K16219: NTMT1, METTL11A, protein N-terminal methyltransferase
10 Sobic.004G104800 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
11 Sobic.007G165900 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
12 Sobic.006G010400 tRNA-dihydrouridine synthase 3-like, putative, expressed K05544: tRNA-dihydrouridine synthase 3
13 Sobic.002G143000 ubiquitin family protein, putative, expressed -
14 Sobic.006G002201 - -
15 Sobic.001G010600 U2 small nuclear ribonucleoprotein A, putative, expressed K11092: U2 small nuclear ribonucleoprotein A'
16 Sobic.006G248400 aldose 1-epimerase, putative, expressed K01792: glucose-6-phosphate 1-epimerase
17 Sobic.006G233000 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
18 Sobic.006G049700 SAM domain family protein, expressed -
19 Sobic.003G293300 nucleoporin, putative, expressed K14304: nuclear pore complex protein Nup85
20 Sobic.010G057900 26S protease regulatory subunit 6A, putative, expressed K03065: PSMC3, 26S proteasome regulatory subunit T5


Gene co-expression network
sample Sobic002G235300 Sobic002G235300 Sobic003G113800 Sobic003G113800 Sobic002G235300--Sobic003G113800 Sobic002G083900 Sobic002G083900 Sobic002G235300--Sobic002G083900 Sobic003G259400 Sobic003G259400 Sobic002G235300--Sobic003G259400 Sobic001G422700 Sobic001G422700 Sobic002G235300--Sobic001G422700 Sobic002G071000 Sobic002G071000 Sobic002G235300--Sobic002G071000 Sobic006G010000 Sobic006G010000 Sobic002G235300--Sobic006G010000 Sobic004G279100 Sobic004G279100 Sobic002G235300--Sobic004G279100 Sobic004G287900 Sobic004G287900 Sobic002G235300--Sobic004G287900 Sobic001G069600 Sobic001G069600 Sobic002G235300--Sobic001G069600 Sobic006G280500 Sobic006G280500 Sobic003G113800--Sobic006G280500 Sobic003G293300 Sobic003G293300 Sobic003G113800--Sobic003G293300 Sobic003G113800--Sobic004G279100 Sobic001G234200 Sobic001G234200 Sobic003G113800--Sobic001G234200 Sobic003G113800--Sobic002G071000 Sobic006G049700 Sobic006G049700 Sobic003G113800--Sobic006G049700 Sobic003G113800--Sobic002G235300 Sobic001G459100 Sobic001G459100 Sobic003G113800--Sobic001G459100 Sobic003G113800--Sobic002G083900 Sobic010G085200 Sobic010G085200 Sobic002G083900--Sobic010G085200 Sobic002G083900--Sobic001G234200 Sobic003G167900 Sobic003G167900 Sobic002G083900--Sobic003G167900 Sobic002G083900--Sobic006G010000 Sobic001G251100 Sobic001G251100 Sobic002G083900--Sobic001G251100 Sobic006G036100 Sobic006G036100 Sobic002G083900--Sobic006G036100 Sobic008G088806 Sobic008G088806 Sobic002G083900--Sobic008G088806 Sobic009G238850 Sobic009G238850 Sobic002G083900--Sobic009G238850 Sobic004G086700 Sobic004G086700 Sobic002G083900--Sobic004G086700 Sobic009G231700 Sobic009G231700 Sobic003G259400--Sobic009G231700 Sobic003G340900 Sobic003G340900 Sobic003G259400--Sobic003G340900 Sobic005G216300 Sobic005G216300 Sobic003G259400--Sobic005G216300 Sobic009G226400 Sobic009G226400 Sobic003G259400--Sobic009G226400 Sobic003G099300 Sobic003G099300 Sobic003G259400--Sobic003G099300 Sobic010G017800 Sobic010G017800 Sobic003G259400--Sobic010G017800 Sobic001G067900 Sobic001G067900 Sobic003G259400--Sobic001G067900 Sobic001G010600 Sobic001G010600 Sobic003G259400--Sobic001G010600 SobicK004100 SobicK004100 Sobic003G259400--SobicK004100 Sobic002G139000 Sobic002G139000 Sobic001G422700--Sobic002G139000 Sobic001G422700--Sobic001G010600 Sobic001G507400 Sobic001G507400 Sobic001G422700--Sobic001G507400 Sobic001G422700--Sobic003G259400 Sobic003G247900 Sobic003G247900 Sobic001G422700--Sobic003G247900 Sobic004G027000 Sobic004G027000 Sobic001G422700--Sobic004G027000 Sobic004G225300 Sobic004G225300 Sobic001G422700--Sobic004G225300 Sobic001G329300 Sobic001G329300 Sobic001G422700--Sobic001G329300 Sobic002G272600 Sobic002G272600 Sobic001G422700--Sobic002G272600 Sobic007G079300 Sobic007G079300 Sobic002G071000--Sobic007G079300 Sobic002G071000--Sobic001G234200 Sobic004G348900 Sobic004G348900 Sobic002G071000--Sobic004G348900 Sobic002G071000--Sobic006G010000 Sobic009G249100 Sobic009G249100 Sobic002G071000--Sobic009G249100 Sobic002G071000--Sobic003G293300 Sobic003G117300 Sobic003G117300 Sobic002G071000--Sobic003G117300 Sobic004G082900 Sobic004G082900 Sobic002G071000--Sobic004G082900 Sobic002G071000--Sobic006G049700 Sobic006G233300 Sobic006G233300 Sobic006G010000--Sobic006G233300 Sobic006G233000 Sobic006G233000 Sobic006G010000--Sobic006G233000 Sobic008G153500 Sobic008G153500 Sobic006G010000--Sobic008G153500 Sobic006G010000--Sobic003G293300 Sobic010G186600 Sobic010G186600 Sobic006G010000--Sobic010G186600 Sobic001G114500 Sobic001G114500 Sobic006G010000--Sobic001G114500 Sobic001G259000 Sobic001G259000 Sobic006G010000--Sobic001G259000 Sobic006G010000--Sobic001G234200 Sobic006G010000--Sobic002G071000 Sobic004G279100--Sobic003G113800 Sobic006G156300 Sobic006G156300 Sobic004G279100--Sobic006G156300 Sobic002G134600 Sobic002G134600 Sobic004G279100--Sobic002G134600 Sobic004G279100--Sobic002G235300 Sobic010G009800 Sobic010G009800 Sobic004G279100--Sobic010G009800 Sobic003G316700 Sobic003G316700 Sobic004G279100--Sobic003G316700 Sobic007G165900 Sobic007G165900 Sobic004G279100--Sobic007G165900 Sobic005G036800 Sobic005G036800 Sobic004G279100--Sobic005G036800 Sobic002G257200 Sobic002G257200 Sobic004G279100--Sobic002G257200 Sobic004G287900--Sobic006G233000 Sobic002G356600 Sobic002G356600 Sobic004G287900--Sobic002G356600 Sobic006G271700 Sobic006G271700 Sobic004G287900--Sobic006G271700 Sobic002G305100 Sobic002G305100 Sobic004G287900--Sobic002G305100 Sobic004G173100 Sobic004G173100 Sobic004G287900--Sobic004G173100 Sobic004G287900--Sobic002G235300 Sobic004G287900--Sobic007G165900 Sobic004G287900--Sobic006G233300 Sobic001G527300 Sobic001G527300 Sobic004G287900--Sobic001G527300 Sobic001G069600--Sobic004G086700 Sobic002G404200 Sobic002G404200 Sobic001G069600--Sobic002G404200 Sobic010G265300 Sobic010G265300 Sobic001G069600--Sobic010G265300 Sobic001G069600--Sobic002G083900 Sobic001G043800 Sobic001G043800 Sobic001G069600--Sobic001G043800 Sobic003G324100 Sobic003G324100 Sobic001G069600--Sobic003G324100 Sobic008G193300 Sobic008G193300 Sobic001G069600--Sobic008G193300 Sobic004G265900 Sobic004G265900 Sobic001G069600--Sobic004G265900 Sobic001G429300 Sobic001G429300 Sobic001G069600--Sobic001G429300
Octagon: transcription factors


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