Gene annotation
Transcriptome id Sobic.004G287900.1
Synonym Sb04g032350
Functional annotation LYR motif containing protein, putative, expressed
UniProt C5Y1D1
Pfam PF05347
Panther DB PTHR13675 PTHR13675:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G76065 : LYR family of Fe/S cluster biogenesis protein
RAP-DB (Rice) LOC_Os02g44704.2 : LYR motif containing protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G233000 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
2 Sobic.002G356600 ZCW7, putative, expressed -
3 Sobic.006G271700 L-asparaginase precursor protein, putative, expressed K08657: taspase, threonine aspartase, 1
4 Sobic.002G305100 mTERF domain containing protein, expressed -
5 Sobic.004G173100 exosome complex exonuclease, putative, expressed K03678: RRP45, exosome complex component RRP45
6 Sobic.002G235300 expressed protein -
7 Sobic.007G165900 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
8 Sobic.006G233300 RNA binding protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
9 Sobic.001G527300 - K14777: DDX47, ATP-dependent RNA helicase DDX47/RRP3
10 Sobic.007G134100 expressed protein -
11 Sobic.002G083900 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
12 Sobic.001G069600 ad-003, putative, expressed K16219: NTMT1, METTL11A, protein N-terminal methyltransferase
13 Sobic.010G085200 mediator of RNA polymerase II transcription subunit 6, putative, expressed K15128: mediator of RNA polymerase II transcription subunit 6
14 Sobic.006G010400 tRNA-dihydrouridine synthase 3-like, putative, expressed K05544: tRNA-dihydrouridine synthase 3
15 Sobic.001G010600 U2 small nuclear ribonucleoprotein A, putative, expressed K11092: U2 small nuclear ribonucleoprotein A'
16 Sobic.006G270600 PSF1 - Putative GINS complex subunit, expressed K10732: GINS1, GINS complex subunit 1
17 Sobic.006G010000 NLI interacting factor-like phosphatase, putative, expressed K17616: CTD small phosphatase-like protein 2
18 Sobic.006G084000 CDK5RAP1, putative, expressed K15865: threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1
19 Sobic.006G014100 serine-rich 25 kDa antigen protein, putative, expressed -
20 Sobic.002G309200 FAR1 family protein, expressed -


Gene co-expression network
sample Sobic004G287900 Sobic004G287900 Sobic006G233000 Sobic006G233000 Sobic004G287900--Sobic006G233000 Sobic002G356600 Sobic002G356600 Sobic004G287900--Sobic002G356600 Sobic006G271700 Sobic006G271700 Sobic004G287900--Sobic006G271700 Sobic002G305100 Sobic002G305100 Sobic004G287900--Sobic002G305100 Sobic004G173100 Sobic004G173100 Sobic004G287900--Sobic004G173100 Sobic002G235300 Sobic002G235300 Sobic004G287900--Sobic002G235300 Sobic007G165900 Sobic007G165900 Sobic004G287900--Sobic007G165900 Sobic006G233300 Sobic006G233300 Sobic004G287900--Sobic006G233300 Sobic001G527300 Sobic001G527300 Sobic004G287900--Sobic001G527300 Sobic006G010000 Sobic006G010000 Sobic006G233000--Sobic006G010000 Sobic010G085200 Sobic010G085200 Sobic006G233000--Sobic010G085200 Sobic006G233000--Sobic006G233300 Sobic004G155600 Sobic004G155600 Sobic006G233000--Sobic004G155600 Sobic001G259000 Sobic001G259000 Sobic006G233000--Sobic001G259000 Sobic002G394800 Sobic002G394800 Sobic006G233000--Sobic002G394800 Sobic003G439800 Sobic003G439800 Sobic006G233000--Sobic003G439800 Sobic006G270600 Sobic006G270600 Sobic006G233000--Sobic006G270600 Sobic007G134100 Sobic007G134100 Sobic006G233000--Sobic007G134100 Sobic002G356600--Sobic007G134100 Sobic004G354000 Sobic004G354000 Sobic002G356600--Sobic004G354000 Sobic003G209400 Sobic003G209400 Sobic002G356600--Sobic003G209400 Sobic002G356600--Sobic006G271700 Sobic002G309200 Sobic002G309200 Sobic002G356600--Sobic002G309200 Sobic004G034700 Sobic004G034700 Sobic002G356600--Sobic004G034700 Sobic002G412700 Sobic002G412700 Sobic002G356600--Sobic002G412700 Sobic008G017100 Sobic008G017100 Sobic002G356600--Sobic008G017100 Sobic009G151800 Sobic009G151800 Sobic002G356600--Sobic009G151800 Sobic009G124900 Sobic009G124900 Sobic006G271700--Sobic009G124900 Sobic006G271700--Sobic004G034700 Sobic006G067600 Sobic006G067600 Sobic006G271700--Sobic006G067600 Sobic001G248100 Sobic001G248100 Sobic006G271700--Sobic001G248100 Sobic001G002600 Sobic001G002600 Sobic006G271700--Sobic001G002600 Sobic009G007700 Sobic009G007700 Sobic006G271700--Sobic009G007700 Sobic001G020000 Sobic001G020000 Sobic006G271700--Sobic001G020000 Sobic004G235300 Sobic004G235300 Sobic006G271700--Sobic004G235300 Sobic007G159200 Sobic007G159200 Sobic006G271700--Sobic007G159200 Sobic008G038600 Sobic008G038600 Sobic002G305100--Sobic008G038600 Sobic003G399100 Sobic003G399100 Sobic002G305100--Sobic003G399100 Sobic001G448600 Sobic001G448600 Sobic002G305100--Sobic001G448600 Sobic009G005400 Sobic009G005400 Sobic002G305100--Sobic009G005400 Sobic001G025800 Sobic001G025800 Sobic002G305100--Sobic001G025800 Sobic004G003900 Sobic004G003900 Sobic002G305100--Sobic004G003900 Sobic001G375000 Sobic001G375000 Sobic002G305100--Sobic001G375000 Sobic004G032100 Sobic004G032100 Sobic002G305100--Sobic004G032100 Sobic007G015300 Sobic007G015300 Sobic002G305100--Sobic007G015300 Sobic009G071700 Sobic009G071700 Sobic004G173100--Sobic009G071700 Sobic006G251600 Sobic006G251600 Sobic004G173100--Sobic006G251600 Sobic003G425100 Sobic003G425100 Sobic004G173100--Sobic003G425100 Sobic002G262100 Sobic002G262100 Sobic004G173100--Sobic002G262100 Sobic006G198600 Sobic006G198600 Sobic004G173100--Sobic006G198600 Sobic002G399200 Sobic002G399200 Sobic004G173100--Sobic002G399200 Sobic003G407600 Sobic003G407600 Sobic004G173100--Sobic003G407600 Sobic005G100900 Sobic005G100900 Sobic004G173100--Sobic005G100900 Sobic008G163500 Sobic008G163500 Sobic004G173100--Sobic008G163500 Sobic003G113800 Sobic003G113800 Sobic002G235300--Sobic003G113800 Sobic002G083900 Sobic002G083900 Sobic002G235300--Sobic002G083900 Sobic003G259400 Sobic003G259400 Sobic002G235300--Sobic003G259400 Sobic001G422700 Sobic001G422700 Sobic002G235300--Sobic001G422700 Sobic002G071000 Sobic002G071000 Sobic002G235300--Sobic002G071000 Sobic002G235300--Sobic006G010000 Sobic004G279100 Sobic004G279100 Sobic002G235300--Sobic004G279100 Sobic002G235300--Sobic004G287900 Sobic001G069600 Sobic001G069600 Sobic002G235300--Sobic001G069600 Sobic004G257100 Sobic004G257100 Sobic007G165900--Sobic004G257100 Sobic006G261400 Sobic006G261400 Sobic007G165900--Sobic006G261400 Sobic008G046500 Sobic008G046500 Sobic007G165900--Sobic008G046500 Sobic004G131800 Sobic004G131800 Sobic007G165900--Sobic004G131800 Sobic006G127600 Sobic006G127600 Sobic007G165900--Sobic006G127600 Sobic001G361300 Sobic001G361300 Sobic007G165900--Sobic001G361300 Sobic001G226700 Sobic001G226700 Sobic007G165900--Sobic001G226700 Sobic001G251100 Sobic001G251100 Sobic007G165900--Sobic001G251100 Sobic010G009800 Sobic010G009800 Sobic007G165900--Sobic010G009800 Sobic006G233300--Sobic006G010000 Sobic002G143900 Sobic002G143900 Sobic006G233300--Sobic002G143900 Sobic006G233300--Sobic006G233000 Sobic003G158700 Sobic003G158700 Sobic006G233300--Sobic003G158700 Sobic006G233300--Sobic002G394800 Sobic003G099300 Sobic003G099300 Sobic006G233300--Sobic003G099300 Sobic010G239800 Sobic010G239800 Sobic006G233300--Sobic010G239800 Sobic010G247400 Sobic010G247400 Sobic006G233300--Sobic010G247400 Sobic002G280600 Sobic002G280600 Sobic006G233300--Sobic002G280600 Sobic004G156800 Sobic004G156800 Sobic001G527300--Sobic004G156800 Sobic008G147200 Sobic008G147200 Sobic001G527300--Sobic008G147200 Sobic009G143800 Sobic009G143800 Sobic001G527300--Sobic009G143800 Sobic001G291800 Sobic001G291800 Sobic001G527300--Sobic001G291800 Sobic001G527300--Sobic010G247400 Sobic010G007100 Sobic010G007100 Sobic001G527300--Sobic010G007100 Sobic006G226300 Sobic006G226300 Sobic001G527300--Sobic006G226300 Sobic001G168900 Sobic001G168900 Sobic001G527300--Sobic001G168900 Sobic004G340400 Sobic004G340400 Sobic001G527300--Sobic004G340400
Octagon: transcription factors


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