Gene annotation
Transcriptome id Sobic.003G205100.2,Sobic.003G205100.3,Sobic.003G205100.1
Synonym Sb03g026670
Functional annotation helicase, putative, expressed
UniProt A0A1B6Q4E8
Pfam PF06733 PF13307
Panther DB PTHR11472 PTHR11472:SF34
NCBI CDD -
KEGG Orthology K11136; regulator of telomere elongation helicase 1
Gene Ontology GO:0005524; ATP binding GO:0004003DNA helicase activity GO:0003677DNA binding GO:0016818hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides GO:0008026helicase activity GO:0006139nucleobase-containing compound metabolic process GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G79950 : RAD3-like DNA-binding helicase protein
RAP-DB (Rice) LOC_Os01g40980.1 : helicase, putative, expressed
MaizeGDB (Corn) Zm00025a028567
Brachypodium KQK08543 , KQK08544 , PNT72306
Barley -
Wheat TraesCS3A02G212600 , TraesCS3A02G212600 , TraesCS3D02G215000 , TraesCS3D02G215000 , TraesCS3B02G242700 , TraesCS3B02G242700 , TraesCS3B02G242700
Populus -


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cDNA sequences
Sobic.003G205100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G194800 EF hand family protein, putative, expressed -
2 Sobic.001G043200 expressed protein -
3 Sobic.001G343000 sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
4 Sobic.007G140100 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
5 Sobic.001G242300 expressed protein -
6 Sobic.009G108400 CAAX amino terminal protease family protein, putative, expressed K08658: RCE1, prenyl protein peptidase
7 Sobic.009G120400 methyltransferase, putative, expressed -
8 Sobic.007G070300 OsFBL41 - F-box domain and LRR containing protein, expressed -
9 Sobic.003G397100 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
10 Sobic.005G123400 expressed protein -
11 Sobic.003G299500 expressed protein -
12 Sobic.001G268300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@queuine tRNA-ribosyltransferase, putative, expressed K15407: queuine tRNA-ribosyltransferase subunit QTRTD1
13 Sobic.003G393200 expressed protein -
14 Sobic.006G237500 PPR repeat domain containing protein, putative, expressed -
15 Sobic.002G182000 cwfJ-like family protein, putative, expressed -
16 Sobic.002G066800 RNA ligase isoform 1, putative, expressed -
17 Sobic.010G172400 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
18 Sobic.003G285700 ATP binding protein, putative, expressed -
19 Sobic.003G028400 OsFBX234 - F-box domain containing protein, expressed -
20 Sobic.009G054400 ECT protein, putative, expressed -


Gene co-expression network
sample Sobic003G205100 Sobic003G205100 Sobic003G194800 Sobic003G194800 Sobic003G205100--Sobic003G194800 Sobic001G043200 Sobic001G043200 Sobic003G205100--Sobic001G043200 Sobic001G343000 Sobic001G343000 Sobic003G205100--Sobic001G343000 Sobic007G140100 Sobic007G140100 Sobic003G205100--Sobic007G140100 Sobic001G242300 Sobic001G242300 Sobic003G205100--Sobic001G242300 Sobic009G108400 Sobic009G108400 Sobic003G205100--Sobic009G108400 Sobic009G120400 Sobic009G120400 Sobic003G205100--Sobic009G120400 Sobic007G070300 Sobic007G070300 Sobic003G205100--Sobic007G070300 Sobic003G397100 Sobic003G397100 Sobic003G205100--Sobic003G397100 Sobic008G085950 Sobic008G085950 Sobic003G194800--Sobic008G085950 Sobic008G047500 Sobic008G047500 Sobic003G194800--Sobic008G047500 Sobic003G194800--Sobic009G120400 Sobic003G204100 Sobic003G204100 Sobic003G194800--Sobic003G204100 Sobic002G173400 Sobic002G173400 Sobic003G194800--Sobic002G173400 Sobic003G299500 Sobic003G299500 Sobic003G194800--Sobic003G299500 Sobic007G105700 Sobic007G105700 Sobic003G194800--Sobic007G105700 Sobic004G215600 Sobic004G215600 Sobic003G194800--Sobic004G215600 Sobic003G420400 Sobic003G420400 Sobic003G194800--Sobic003G420400 Sobic005G123400 Sobic005G123400 Sobic001G043200--Sobic005G123400 Sobic003G190200 Sobic003G190200 Sobic001G043200--Sobic003G190200 Sobic003G021600 Sobic003G021600 Sobic001G043200--Sobic003G021600 Sobic003G394500 Sobic003G394500 Sobic001G043200--Sobic003G394500 Sobic009G122500 Sobic009G122500 Sobic001G043200--Sobic009G122500 Sobic007G030100 Sobic007G030100 Sobic001G043200--Sobic007G030100 Sobic004G122900 Sobic004G122900 Sobic001G043200--Sobic004G122900 Sobic009G154900 Sobic009G154900 Sobic001G043200--Sobic009G154900 Sobic001G043200--Sobic003G194800 Sobic007G146600 Sobic007G146600 Sobic001G343000--Sobic007G146600 Sobic003G393200 Sobic003G393200 Sobic001G343000--Sobic003G393200 Sobic007G048700 Sobic007G048700 Sobic001G343000--Sobic007G048700 Sobic002G182000 Sobic002G182000 Sobic001G343000--Sobic002G182000 Sobic001G343000--Sobic007G030100 Sobic010G028400 Sobic010G028400 Sobic001G343000--Sobic010G028400 Sobic002G070300 Sobic002G070300 Sobic001G343000--Sobic002G070300 Sobic008G132200 Sobic008G132200 Sobic001G343000--Sobic008G132200 Sobic001G012900 Sobic001G012900 Sobic001G343000--Sobic001G012900 Sobic010G080900 Sobic010G080900 Sobic007G140100--Sobic010G080900 Sobic010G188900 Sobic010G188900 Sobic007G140100--Sobic010G188900 Sobic007G140100--Sobic008G047500 Sobic010G018900 Sobic010G018900 Sobic007G140100--Sobic010G018900 Sobic007G010200 Sobic007G010200 Sobic007G140100--Sobic007G010200 Sobic001G203600 Sobic001G203600 Sobic007G140100--Sobic001G203600 Sobic004G007700 Sobic004G007700 Sobic007G140100--Sobic004G007700 Sobic001G268300 Sobic001G268300 Sobic007G140100--Sobic001G268300 Sobic006G153200 Sobic006G153200 Sobic007G140100--Sobic006G153200 Sobic001G242300--Sobic003G397100 Sobic006G262700 Sobic006G262700 Sobic001G242300--Sobic006G262700 Sobic002G123600 Sobic002G123600 Sobic001G242300--Sobic002G123600 Sobic004G256900 Sobic004G256900 Sobic001G242300--Sobic004G256900 Sobic008G169400 Sobic008G169400 Sobic001G242300--Sobic008G169400 Sobic003G331000 Sobic003G331000 Sobic001G242300--Sobic003G331000 Sobic001G361200 Sobic001G361200 Sobic001G242300--Sobic001G361200 Sobic001G242300--Sobic009G120400 Sobic006G237500 Sobic006G237500 Sobic001G242300--Sobic006G237500 Sobic009G040800 Sobic009G040800 Sobic009G108400--Sobic009G040800 Sobic001G335900 Sobic001G335900 Sobic009G108400--Sobic001G335900 Sobic009G108400--Sobic009G154900 Sobic009G108400--Sobic001G012900 Sobic001G247200 Sobic001G247200 Sobic009G108400--Sobic001G247200 Sobic006G091000 Sobic006G091000 Sobic009G108400--Sobic006G091000 Sobic009G108400--Sobic003G205100 Sobic004G007900 Sobic004G007900 Sobic009G108400--Sobic004G007900 Sobic010G172400 Sobic010G172400 Sobic009G108400--Sobic010G172400 Sobic009G120400--Sobic002G173400 Sobic002G426100 Sobic002G426100 Sobic009G120400--Sobic002G426100 Sobic007G034200 Sobic007G034200 Sobic009G120400--Sobic007G034200 Sobic009G120400--Sobic003G194800 Sobic009G120400--Sobic004G215600 Sobic009G120400--Sobic007G105700 Sobic009G120400--Sobic003G299500 Sobic007G186400 Sobic007G186400 Sobic009G120400--Sobic007G186400 Sobic001G051400 Sobic001G051400 Sobic009G120400--Sobic001G051400 Sobic007G070300--Sobic003G205100 Sobic007G070300--Sobic009G040800 Sobic010G046400 Sobic010G046400 Sobic007G070300--Sobic010G046400 Sobic010G237650 Sobic010G237650 Sobic007G070300--Sobic010G237650 Sobic002G268900 Sobic002G268900 Sobic007G070300--Sobic002G268900 Sobic004G353400 Sobic004G353400 Sobic007G070300--Sobic004G353400 Sobic003G028400 Sobic003G028400 Sobic007G070300--Sobic003G028400 Sobic007G070300--Sobic001G247200 Sobic008G090300 Sobic008G090300 Sobic007G070300--Sobic008G090300 Sobic003G397100--Sobic001G242300 Sobic003G397100--Sobic002G123600 Sobic002G260700 Sobic002G260700 Sobic003G397100--Sobic002G260700 Sobic003G397100--Sobic008G090300 Sobic003G397100--Sobic008G169400 Sobic008G112100 Sobic008G112100 Sobic003G397100--Sobic008G112100 Sobic010G143600 Sobic010G143600 Sobic003G397100--Sobic010G143600 Sobic001G448100 Sobic001G448100 Sobic003G397100--Sobic001G448100 Sobic008G031200 Sobic008G031200 Sobic003G397100--Sobic008G031200
Octagon: transcription factors


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