Gene annotation
Transcriptome id Sobic.007G171200.3,Sobic.007G171200.2,Sobic.007G171200.1
Synonym Sb07g024340
Functional annotation dihydrodipicolinate reductase, putative, expressed
UniProt A0A1Z5RAC6 , A0A1Z5RB94 , A0A1Z5RAE2
Pfam PF01113 PF05173 PF05173 PF01113
Panther DB PTHR20836 PTHR20836:SF3 PTHR20836 PTHR20836:SF0
NCBI CDD -
KEGG Orthology K00215; 4-hydroxy-tetrahydrodipicolinate reductase
Gene Ontology GO:0009089; lysine biosynthetic process via diaminopimelate GO:00088394-hydroxy-tetrahydrodipicolinate reductase


Orthologs (automatic annotation)
TAIR AT3G59890 : Dihydrodipicolinate reductase, bacterial/plant
RAP-DB (Rice) LOC_Os02g24020.1 : dihydrodipicolinate reductase, putative, expressed
MaizeGDB (Corn) Zm00025a030567
Brachypodium KQJ94631 , KQJ94632
Barley HORVU1Hr1G021120.1 , HORVU1Hr1G021120.3 , HORVU1Hr1G021120.2 , HORVU1Hr1G021120.5 , HORVU1Hr1G021120.4 , HORVU1Hr1G021120.7 , HORVU1Hr1G021120.6
Wheat TraesCS1A02G102500 , TraesCS1A02G102500 , TraesCS4D02G226800 , TraesCS1B02G113300 , TraesCS1B02G113300 , TraesCS1B02G113300 , TraesCS4A02G069000 , TraesCS4A02G069000 , TraesCS1D02G094400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G125100 39S ribosomal protein L46, mitochondrial precursor, putative, expressed K17427: large subunit ribosomal protein L46
2 Sobic.008G083400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@argininosuccinate synthase, chloroplast precursor, putative, expressed K01940: argG, argininosuccinate synthase
3 Sobic.001G081900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@semialdehyde dehydrogenase, NAD binding domain containing protein, putative, expressed K00133: aspartate-semialdehyde dehydrogenase
4 Sobic.010G032700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase domain containing protein, expressed K11434: type I protein arginine methyltransferase
5 Sobic.001G371100 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
6 Sobic.002G054000 ribosomal protein L4, putative, expressed K02930: RP-L4e, large subunit ribosomal protein L4e
7 Sobic.007G134800 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K00627: DLAT, aceF, pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase)
8 Sobic.006G243400 D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed K00058: serA, D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase
9 Sobic.002G101000 mitochondrial prohibitin complex protein 2, putative, expressed K17081: prohibitin 2
10 Sobic.001G413100 nucleotide binding protein, putative, expressed -
11 Sobic.010G134100 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
12 Sobic.003G008600 eukaryotic translation initiation factor 3 subunit E-interacting protein, putative, expressed K15029: translation initiation factor 3 subunit L
13 Sobic.001G432300 imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative, expressed K01663: imidazole glycerol-phosphate synthase
14 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
15 Sobic.002G317600 endoribonuclease, putative, expressed -
16 Sobic.001G397000 argininosuccinate lyase, putative, expressed K01755: argH, argininosuccinate lyase
17 Sobic.001G167500 ribosomal protein L25, putative, expressed K02897: RP-L25, large subunit ribosomal protein L25
18 Sobic.007G079600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FabA-like domain containing protein, expressed K02372: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase
19 Sobic.002G365900 WD repeat-containing protein 12, putative, expressed K14863: WDR12, ribosome biogenesis protein
20 Sobic.010G277000 exosome complex exonuclease, putative, expressed K12589: RRP42, exosome complex component RRP42


Gene co-expression network
sample Sobic007G171200 Sobic007G171200 Sobic010G125100 Sobic010G125100 Sobic007G171200--Sobic010G125100 Sobic008G083400 Sobic008G083400 Sobic007G171200--Sobic008G083400 Sobic001G081900 Sobic001G081900 Sobic007G171200--Sobic001G081900 Sobic010G032700 Sobic010G032700 Sobic007G171200--Sobic010G032700 Sobic001G371100 Sobic001G371100 Sobic007G171200--Sobic001G371100 Sobic002G054000 Sobic002G054000 Sobic007G171200--Sobic002G054000 Sobic007G134800 Sobic007G134800 Sobic007G171200--Sobic007G134800 Sobic006G243400 Sobic006G243400 Sobic007G171200--Sobic006G243400 Sobic002G101000 Sobic002G101000 Sobic007G171200--Sobic002G101000 Sobic010G125100--Sobic007G171200 Sobic001G413100 Sobic001G413100 Sobic010G125100--Sobic001G413100 Sobic010G125100--Sobic001G081900 Sobic001G167500 Sobic001G167500 Sobic010G125100--Sobic001G167500 Sobic010G125100--Sobic002G101000 Sobic010G134100 Sobic010G134100 Sobic010G125100--Sobic010G134100 Sobic007G220900 Sobic007G220900 Sobic010G125100--Sobic007G220900 Sobic010G125100--Sobic008G083400 Sobic006G157000 Sobic006G157000 Sobic010G125100--Sobic006G157000 Sobic006G251600 Sobic006G251600 Sobic008G083400--Sobic006G251600 Sobic001G432300 Sobic001G432300 Sobic008G083400--Sobic001G432300 Sobic008G083400--Sobic001G371100 Sobic004G249300 Sobic004G249300 Sobic008G083400--Sobic004G249300 Sobic009G081500 Sobic009G081500 Sobic008G083400--Sobic009G081500 Sobic002G110400 Sobic002G110400 Sobic008G083400--Sobic002G110400 Sobic008G083400--Sobic007G171200 Sobic001G008500 Sobic001G008500 Sobic008G083400--Sobic001G008500 Sobic003G407800 Sobic003G407800 Sobic008G083400--Sobic003G407800 Sobic001G081900--Sobic001G371100 Sobic001G397000 Sobic001G397000 Sobic001G081900--Sobic001G397000 Sobic001G081900--Sobic010G125100 Sobic007G079600 Sobic007G079600 Sobic001G081900--Sobic007G079600 Sobic010G144900 Sobic010G144900 Sobic001G081900--Sobic010G144900 Sobic001G081900--Sobic002G101000 Sobic002G304400 Sobic002G304400 Sobic001G081900--Sobic002G304400 Sobic001G081900--Sobic007G171200 Sobic001G081900--Sobic010G032700 Sobic010G032700--Sobic001G371100 Sobic009G119700 Sobic009G119700 Sobic010G032700--Sobic009G119700 Sobic002G280700 Sobic002G280700 Sobic010G032700--Sobic002G280700 Sobic009G088200 Sobic009G088200 Sobic010G032700--Sobic009G088200 Sobic004G343600 Sobic004G343600 Sobic010G032700--Sobic004G343600 Sobic010G032700--Sobic002G054000 Sobic002G319200 Sobic002G319200 Sobic010G032700--Sobic002G319200 Sobic002G045100 Sobic002G045100 Sobic010G032700--Sobic002G045100 Sobic001G228200 Sobic001G228200 Sobic010G032700--Sobic001G228200 Sobic001G371100--Sobic010G032700 Sobic001G371100--Sobic001G081900 Sobic001G371100--Sobic001G397000 Sobic001G530800 Sobic001G530800 Sobic001G371100--Sobic001G530800 Sobic001G371100--Sobic006G251600 Sobic004G047200 Sobic004G047200 Sobic001G371100--Sobic004G047200 Sobic001G371100--Sobic008G083400 Sobic004G082700 Sobic004G082700 Sobic001G371100--Sobic004G082700 Sobic001G371100--Sobic001G228200 Sobic008G135000 Sobic008G135000 Sobic002G054000--Sobic008G135000 Sobic009G233400 Sobic009G233400 Sobic002G054000--Sobic009G233400 Sobic001G058900 Sobic001G058900 Sobic002G054000--Sobic001G058900 Sobic005G050500 Sobic005G050500 Sobic002G054000--Sobic005G050500 Sobic001G334300 Sobic001G334300 Sobic002G054000--Sobic001G334300 Sobic002G304900 Sobic002G304900 Sobic002G054000--Sobic002G304900 Sobic004G342400 Sobic004G342400 Sobic002G054000--Sobic004G342400 Sobic009G191200 Sobic009G191200 Sobic002G054000--Sobic009G191200 Sobic010G005300 Sobic010G005300 Sobic002G054000--Sobic010G005300 Sobic007G134800--Sobic001G397000 Sobic003G300900 Sobic003G300900 Sobic007G134800--Sobic003G300900 Sobic001G410200 Sobic001G410200 Sobic007G134800--Sobic001G410200 Sobic007G134800--Sobic002G101000 Sobic007G112100 Sobic007G112100 Sobic007G134800--Sobic007G112100 Sobic003G179000 Sobic003G179000 Sobic007G134800--Sobic003G179000 Sobic007G029400 Sobic007G029400 Sobic007G134800--Sobic007G029400 Sobic001G336050 Sobic001G336050 Sobic007G134800--Sobic001G336050 Sobic007G134800--Sobic007G079600 Sobic007G143000 Sobic007G143000 Sobic006G243400--Sobic007G143000 Sobic001G214900 Sobic001G214900 Sobic006G243400--Sobic001G214900 Sobic003G160900 Sobic003G160900 Sobic006G243400--Sobic003G160900 Sobic006G243400--Sobic006G157000 Sobic010G018000 Sobic010G018000 Sobic006G243400--Sobic010G018000 Sobic001G481700 Sobic001G481700 Sobic006G243400--Sobic001G481700 Sobic006G017100 Sobic006G017100 Sobic006G243400--Sobic006G017100 Sobic006G243400--Sobic010G134100 Sobic006G243400--Sobic010G125100 Sobic009G104100 Sobic009G104100 Sobic002G101000--Sobic009G104100 Sobic002G101000--Sobic007G220900 Sobic002G101000--Sobic007G029400 Sobic009G179100 Sobic009G179100 Sobic002G101000--Sobic009G179100 Sobic002G101000--Sobic005G050500 Sobic009G101700 Sobic009G101700 Sobic002G101000--Sobic009G101700 Sobic002G101000--Sobic002G054000 Sobic002G101000--Sobic004G342400 Sobic004G349700 Sobic004G349700 Sobic002G101000--Sobic004G349700
Octagon: transcription factors


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