Gene annotation
Transcriptome id Sobic.003G188500.1
Synonym Sb03g025330
Functional annotation RWD domain containing protein, expressed
UniProt C5XN31
Pfam PF05773
Panther DB PTHR12292
NCBI CDD KOG4018; Uncharacterized conserved protein, contains RWD domain
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G51730 : Ubiquitin-conjugating enzyme family protein
RAP-DB (Rice) LOC_Os01g37770.1 : RWD domain containing protein, expressed
MaizeGDB (Corn) Zm00025a038341 , Zm00025a028776
Brachypodium KQK08314
Barley HORVU3Hr1G048890.5 , HORVU3Hr1G048890.2 , HORVU3Hr1G048890.3 , HORVU3Hr1G048890.1 , HORVU3Hr1G048890.4
Wheat TraesCS3D02G206200 , TraesCS3D02G206200 , TraesCS3A02G202600 , TraesCS3A02G202600 , TraesCS3B02G223300
Populus -


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cDNA sequences
Sobic.003G188500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G509500 glutamyl-tRNA synthetase, cytoplasmic, putative, expressed K01885: EARS, glutamyl-tRNA synthetase
2 Sobic.001G524400 G-patch domain containing protein, expressed K11135: Pin2-interacting protein X1
3 Sobic.008G014500 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
4 Sobic.006G182200 WD domain, G-beta repeat domain containing protein, expressed -
5 Sobic.007G207200 phenylalanyl-tRNA synthetase beta chain, putative, expressed K01890: FARSB, phenylalanyl-tRNA synthetase beta chain
6 Sobic.005G157100 THUMP domain-containing protein, putative, expressed K06963: TAN1, tRNA acetyltransferase TAN1
7 Sobic.002G058400 disease resistance protein RPM1, putative, expressed K13457: RPM1, disease resistance protein RPM1
8 Sobic.010G166400 initiator tRNA phosphoribosyl transferase family protein, putative, expressed K15463: tRNA A64-2'-O-ribosylphosphate transferase
9 Sobic.003G221600 expressed protein -
10 Sobic.003G300300 la domain containing protein, expressed K15191: La-related protein 7
11 Sobic.008G185300 PPR repeat domain containing protein, putative, expressed -
12 Sobic.010G209400 WD domain, G-beta repeat domain containing protein, expressed K03130: transcription initiation factor TFIID subunit 5
13 Sobic.001G081000 nucleotide-binding protein-like, putative, expressed K03593: mrp, ATP-binding protein involved in chromosome partitioning
14 Sobic.001G355200 tRNA pseudouridine synthase family protein, putative, expressed K01855: PUS3, tRNA pseudouridine38/39 synthase
15 Sobic.006G200700 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein
16 Sobic.001G171600 PPR repeat containing protein, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
17 Sobic.004G223600 transcription factor-related, putative, expressed K15199: general transcription factor 3C polypeptide 1
18 Sobic.009G101200 expressed protein K17973: NAA25, N-terminal acetyltransferase B complex non-catalytic subunit
19 Sobic.009G143800 - K14806: DDX31, ATP-dependent RNA helicase DDX31/DBP7
20 Sobic.001G219900 expressed protein -


Gene co-expression network
sample Sobic003G188500 Sobic003G188500 Sobic001G509500 Sobic001G509500 Sobic003G188500--Sobic001G509500 Sobic001G524400 Sobic001G524400 Sobic003G188500--Sobic001G524400 Sobic008G014500 Sobic008G014500 Sobic003G188500--Sobic008G014500 Sobic006G182200 Sobic006G182200 Sobic003G188500--Sobic006G182200 Sobic007G207200 Sobic007G207200 Sobic003G188500--Sobic007G207200 Sobic005G157100 Sobic005G157100 Sobic003G188500--Sobic005G157100 Sobic002G058400 Sobic002G058400 Sobic003G188500--Sobic002G058400 Sobic010G166400 Sobic010G166400 Sobic003G188500--Sobic010G166400 Sobic003G221600 Sobic003G221600 Sobic003G188500--Sobic003G221600 Sobic003G004300 Sobic003G004300 Sobic001G509500--Sobic003G004300 Sobic008G098300 Sobic008G098300 Sobic001G509500--Sobic008G098300 Sobic001G509500--Sobic006G182200 Sobic001G509500--Sobic003G188500 Sobic001G008200 Sobic001G008200 Sobic001G509500--Sobic001G008200 Sobic004G264400 Sobic004G264400 Sobic001G509500--Sobic004G264400 Sobic009G056200 Sobic009G056200 Sobic001G509500--Sobic009G056200 Sobic004G048800 Sobic004G048800 Sobic001G509500--Sobic004G048800 Sobic006G200700 Sobic006G200700 Sobic001G509500--Sobic006G200700 Sobic004G307500 Sobic004G307500 Sobic001G524400--Sobic004G307500 Sobic010G203300 Sobic010G203300 Sobic001G524400--Sobic010G203300 Sobic006G135900 Sobic006G135900 Sobic001G524400--Sobic006G135900 Sobic007G039400 Sobic007G039400 Sobic001G524400--Sobic007G039400 Sobic003G300300 Sobic003G300300 Sobic001G524400--Sobic003G300300 Sobic008G103300 Sobic008G103300 Sobic001G524400--Sobic008G103300 Sobic001G524400--Sobic003G188500 Sobic009G138700 Sobic009G138700 Sobic001G524400--Sobic009G138700 Sobic004G346100 Sobic004G346100 Sobic001G524400--Sobic004G346100 Sobic008G014500--Sobic010G166400 Sobic001G091400 Sobic001G091400 Sobic008G014500--Sobic001G091400 Sobic008G014500--Sobic006G200700 Sobic010G236400 Sobic010G236400 Sobic008G014500--Sobic010G236400 Sobic002G275600 Sobic002G275600 Sobic008G014500--Sobic002G275600 Sobic007G075900 Sobic007G075900 Sobic008G014500--Sobic007G075900 Sobic010G209400 Sobic010G209400 Sobic008G014500--Sobic010G209400 Sobic009G119000 Sobic009G119000 Sobic008G014500--Sobic009G119000 Sobic001G522600 Sobic001G522600 Sobic008G014500--Sobic001G522600 Sobic004G274200 Sobic004G274200 Sobic006G182200--Sobic004G274200 Sobic001G473600 Sobic001G473600 Sobic006G182200--Sobic001G473600 Sobic001G016000 Sobic001G016000 Sobic006G182200--Sobic001G016000 Sobic004G353000 Sobic004G353000 Sobic006G182200--Sobic004G353000 Sobic001G360200 Sobic001G360200 Sobic006G182200--Sobic001G360200 Sobic010G116600 Sobic010G116600 Sobic006G182200--Sobic010G116600 Sobic001G466700 Sobic001G466700 Sobic006G182200--Sobic001G466700 Sobic004G339100 Sobic004G339100 Sobic006G182200--Sobic004G339100 Sobic002G283600 Sobic002G283600 Sobic006G182200--Sobic002G283600 Sobic001G166600 Sobic001G166600 Sobic007G207200--Sobic001G166600 Sobic001G219600 Sobic001G219600 Sobic007G207200--Sobic001G219600 Sobic002G317200 Sobic002G317200 Sobic007G207200--Sobic002G317200 Sobic007G207200--Sobic010G166400 Sobic001G407700 Sobic001G407700 Sobic007G207200--Sobic001G407700 Sobic009G084900 Sobic009G084900 Sobic007G207200--Sobic009G084900 Sobic007G207200--Sobic009G056200 Sobic009G047200 Sobic009G047200 Sobic007G207200--Sobic009G047200 Sobic007G207200--Sobic010G116600 Sobic005G157100--Sobic010G209400 Sobic006G226300 Sobic006G226300 Sobic005G157100--Sobic006G226300 Sobic005G157100--Sobic008G014500 Sobic008G131000 Sobic008G131000 Sobic005G157100--Sobic008G131000 Sobic001G167200 Sobic001G167200 Sobic005G157100--Sobic001G167200 Sobic002G158700 Sobic002G158700 Sobic005G157100--Sobic002G158700 Sobic001G511500 Sobic001G511500 Sobic005G157100--Sobic001G511500 Sobic003G258900 Sobic003G258900 Sobic005G157100--Sobic003G258900 Sobic010G065300 Sobic010G065300 Sobic005G157100--Sobic010G065300 Sobic003G267800 Sobic003G267800 Sobic002G058400--Sobic003G267800 Sobic001G504200 Sobic001G504200 Sobic002G058400--Sobic001G504200 Sobic005G133500 Sobic005G133500 Sobic002G058400--Sobic005G133500 Sobic009G135800 Sobic009G135800 Sobic002G058400--Sobic009G135800 Sobic004G223600 Sobic004G223600 Sobic002G058400--Sobic004G223600 Sobic004G246100 Sobic004G246100 Sobic002G058400--Sobic004G246100 Sobic006G245400 Sobic006G245400 Sobic002G058400--Sobic006G245400 Sobic002G396000 Sobic002G396000 Sobic002G058400--Sobic002G396000 Sobic002G058400--Sobic001G509500 Sobic010G166400--Sobic008G014500 Sobic010G166400--Sobic010G116600 Sobic010G059500 Sobic010G059500 Sobic010G166400--Sobic010G059500 Sobic010G166400--Sobic007G207200 Sobic003G093800 Sobic003G093800 Sobic010G166400--Sobic003G093800 Sobic007G042400 Sobic007G042400 Sobic010G166400--Sobic007G042400 Sobic010G166400--Sobic002G317200 Sobic009G177500 Sobic009G177500 Sobic010G166400--Sobic009G177500 Sobic010G166400--Sobic009G084900 Sobic001G081000 Sobic001G081000 Sobic003G221600--Sobic001G081000 Sobic003G221600--Sobic003G258900 Sobic008G078300 Sobic008G078300 Sobic003G221600--Sobic008G078300 Sobic009G145101 Sobic009G145101 Sobic003G221600--Sobic009G145101 Sobic003G221600--Sobic005G157100 Sobic007G220300 Sobic007G220300 Sobic003G221600--Sobic007G220300 Sobic003G221600--Sobic008G131000 Sobic003G221600--Sobic003G267800 Sobic003G221600--Sobic006G226300
Octagon: transcription factors


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