Gene annotation
Transcriptome id Sobic.004G291000.2
Synonym HAM3, ATHAM3, Sb04g032590
Functional annotation scarecrow, putative, expressed
UniProt A0A1Z5RPJ4
Pfam PF03514
Panther DB PTHR31636 PTHR31636:SF64
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G00150 : GRAS family transcription factor
RAP-DB (Rice) LOC_Os02g44370.1 : scarecrow, putative, expressed
MaizeGDB (Corn) Zm00025a056845 , Zm00025a021419 , Zm00025a010287 , Zm00025a038031 , Zm00025a032229
Brachypodium PNT69189
Barley HORVU6Hr1G063650.2 , HORVU6Hr1G063650.3 , HORVU6Hr1G063650.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G183900 ubiquitin family protein, putative, expressed -
2 Sobic.001G267900 - -
3 Sobic.005G021500 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
4 Sobic.001G425800 src homology-3 domain protein 3, putative, expressed -
5 Sobic.009G195200 ESP1, putative, expressed -
6 Sobic.001G533700 STE_PAK_Ste20_STLK.3 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
7 Sobic.004G158200 zinc finger, C3HC4 type domain containing protein, expressed -
8 Sobic.001G362200 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
9 Sobic.007G191700 expressed protein K08507: unconventional SNARE in the endoplasmic reticulum protein 1
10 Sobic.010G009800 OsFBX182 - F-box domain containing protein, expressed -
11 Sobic.008G147200 tubulin, putative, expressed -
12 Sobic.007G011600 KH domain-containing protein, putative, expressed K13210: far upstream element-binding protein
13 Sobic.003G409200 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
14 Sobic.006G180700 SNF2 family N-terminal domain containing protein, expressed K14439: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1
15 Sobic.002G134600 nucleic acid binding protein, putative, expressed -
16 Sobic.005G220000 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
17 Sobic.010G076300 - -
18 Sobic.003G362900 Transcription initiation factor TFIID subunit A containing protein, expressed K03126: transcription initiation factor TFIID subunit 12
19 Sobic.001G226700 WD repeat-containing protein, putative, expressed -
20 Sobic.005G079800 transcriptional corepressor SEUSS, putative, expressed -


Gene co-expression network
sample Sobic004G291000 Sobic004G291000 Sobic007G183900 Sobic007G183900 Sobic004G291000--Sobic007G183900 Sobic001G267900 Sobic001G267900 Sobic004G291000--Sobic001G267900 Sobic005G021500 Sobic005G021500 Sobic004G291000--Sobic005G021500 Sobic001G425800 Sobic001G425800 Sobic004G291000--Sobic001G425800 Sobic009G195200 Sobic009G195200 Sobic004G291000--Sobic009G195200 Sobic001G533700 Sobic001G533700 Sobic004G291000--Sobic001G533700 Sobic004G158200 Sobic004G158200 Sobic004G291000--Sobic004G158200 Sobic001G362200 Sobic001G362200 Sobic004G291000--Sobic001G362200 Sobic007G191700 Sobic007G191700 Sobic004G291000--Sobic007G191700 Sobic003G416700 Sobic003G416700 Sobic007G183900--Sobic003G416700 Sobic006G118700 Sobic006G118700 Sobic007G183900--Sobic006G118700 Sobic003G360400 Sobic003G360400 Sobic007G183900--Sobic003G360400 Sobic010G236400 Sobic010G236400 Sobic007G183900--Sobic010G236400 Sobic009G044800 Sobic009G044800 Sobic007G183900--Sobic009G044800 Sobic010G069100 Sobic010G069100 Sobic007G183900--Sobic010G069100 Sobic010G275500 Sobic010G275500 Sobic007G183900--Sobic010G275500 Sobic001G354600 Sobic001G354600 Sobic007G183900--Sobic001G354600 Sobic002G264200 Sobic002G264200 Sobic007G183900--Sobic002G264200 Sobic010G056000 Sobic010G056000 Sobic001G267900--Sobic010G056000 Sobic006G165000 Sobic006G165000 Sobic001G267900--Sobic006G165000 Sobic003G084900 Sobic003G084900 Sobic001G267900--Sobic003G084900 Sobic010G028800 Sobic010G028800 Sobic001G267900--Sobic010G028800 Sobic001G518400 Sobic001G518400 Sobic001G267900--Sobic001G518400 Sobic003G241200 Sobic003G241200 Sobic001G267900--Sobic003G241200 Sobic001G094000 Sobic001G094000 Sobic001G267900--Sobic001G094000 Sobic006G222300 Sobic006G222300 Sobic001G267900--Sobic006G222300 Sobic001G267900--Sobic001G362200 Sobic002G320500 Sobic002G320500 Sobic005G021500--Sobic002G320500 Sobic009G065100 Sobic009G065100 Sobic005G021500--Sobic009G065100 Sobic003G394300 Sobic003G394300 Sobic005G021500--Sobic003G394300 Sobic005G021500--Sobic001G533700 Sobic005G021500--Sobic004G158200 Sobic004G039200 Sobic004G039200 Sobic005G021500--Sobic004G039200 Sobic009G000500 Sobic009G000500 Sobic005G021500--Sobic009G000500 Sobic006G133800 Sobic006G133800 Sobic005G021500--Sobic006G133800 Sobic001G090400 Sobic001G090400 Sobic005G021500--Sobic001G090400 Sobic002G134600 Sobic002G134600 Sobic001G425800--Sobic002G134600 Sobic010G223700 Sobic010G223700 Sobic001G425800--Sobic010G223700 Sobic007G006900 Sobic007G006900 Sobic001G425800--Sobic007G006900 Sobic008G046500 Sobic008G046500 Sobic001G425800--Sobic008G046500 Sobic010G249100 Sobic010G249100 Sobic001G425800--Sobic010G249100 Sobic001G226700 Sobic001G226700 Sobic001G425800--Sobic001G226700 Sobic002G257200 Sobic002G257200 Sobic001G425800--Sobic002G257200 Sobic004G146800 Sobic004G146800 Sobic001G425800--Sobic004G146800 Sobic008G124900 Sobic008G124900 Sobic001G425800--Sobic008G124900 Sobic002G259800 Sobic002G259800 Sobic009G195200--Sobic002G259800 Sobic003G433500 Sobic003G433500 Sobic009G195200--Sobic003G433500 Sobic006G267300 Sobic006G267300 Sobic009G195200--Sobic006G267300 Sobic009G195200--Sobic002G264200 Sobic001G246500 Sobic001G246500 Sobic009G195200--Sobic001G246500 Sobic003G355000 Sobic003G355000 Sobic009G195200--Sobic003G355000 Sobic007G091600 Sobic007G091600 Sobic009G195200--Sobic007G091600 Sobic001G306900 Sobic001G306900 Sobic009G195200--Sobic001G306900 Sobic001G226000 Sobic001G226000 Sobic009G195200--Sobic001G226000 Sobic001G533700--Sobic004G158200 Sobic001G533700--Sobic005G021500 Sobic001G205200 Sobic001G205200 Sobic001G533700--Sobic001G205200 Sobic007G167500 Sobic007G167500 Sobic001G533700--Sobic007G167500 Sobic002G006900 Sobic002G006900 Sobic001G533700--Sobic002G006900 Sobic008G173900 Sobic008G173900 Sobic001G533700--Sobic008G173900 Sobic006G048500 Sobic006G048500 Sobic001G533700--Sobic006G048500 Sobic001G533700--Sobic009G065100 Sobic009G210500 Sobic009G210500 Sobic001G533700--Sobic009G210500 Sobic004G084300 Sobic004G084300 Sobic004G158200--Sobic004G084300 Sobic004G158200--Sobic001G533700 Sobic001G311500 Sobic001G311500 Sobic004G158200--Sobic001G311500 Sobic004G158200--Sobic009G065100 Sobic004G158200--Sobic003G394300 Sobic007G065400 Sobic007G065400 Sobic004G158200--Sobic007G065400 Sobic004G158200--Sobic005G021500 Sobic008G067600 Sobic008G067600 Sobic004G158200--Sobic008G067600 Sobic004G158200--Sobic002G006900 Sobic003G332500 Sobic003G332500 Sobic001G362200--Sobic003G332500 Sobic003G109700 Sobic003G109700 Sobic001G362200--Sobic003G109700 Sobic006G032900 Sobic006G032900 Sobic001G362200--Sobic006G032900 Sobic001G102700 Sobic001G102700 Sobic001G362200--Sobic001G102700 Sobic001G515000 Sobic001G515000 Sobic001G362200--Sobic001G515000 Sobic004G192200 Sobic004G192200 Sobic001G362200--Sobic004G192200 Sobic004G072100 Sobic004G072100 Sobic001G362200--Sobic004G072100 Sobic001G362200--Sobic002G134600 Sobic001G362200--Sobic007G183900 Sobic010G237900 Sobic010G237900 Sobic007G191700--Sobic010G237900 Sobic007G191700--Sobic007G091600 Sobic004G129300 Sobic004G129300 Sobic007G191700--Sobic004G129300 Sobic001G395100 Sobic001G395100 Sobic007G191700--Sobic001G395100 Sobic005G079800 Sobic005G079800 Sobic007G191700--Sobic005G079800 Sobic010G279700 Sobic010G279700 Sobic007G191700--Sobic010G279700 Sobic007G191700--Sobic006G118700 Sobic007G041300 Sobic007G041300 Sobic007G191700--Sobic007G041300 Sobic001G473600 Sobic001G473600 Sobic007G191700--Sobic001G473600
Octagon: transcription factors


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