Gene annotation
Transcriptome id Sobic.003G328600.1
Synonym Sb03g037470
Functional annotation proline-rich family protein, putative, expressed
UniProt C5XMJ3
Pfam PF16711 PF16712 PF16709
Panther DB PTHR31172 PTHR31172:SF2
NCBI CDD KOG1973; Chromatin remodeling protein, contains PHD Zn-finger
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G26770 : plectin-related
RAP-DB (Rice) LOC_Os01g59130.2 : proline-rich family protein, putative, expressed
MaizeGDB (Corn) Zm00025a039827 , Zm00025a027159
Brachypodium KQK10216
Barley HORVU5Hr1G029670.5 , HORVU5Hr1G029670.4 , HORVU3Hr1G078900.1
Wheat TraesCS3B02G363300 , TraesCS3B02G363300 , TraesCS3A02G333100 , TraesCS3D02G326700
Populus -


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cDNA sequences
Sobic.003G328600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G219000 ANTH/ENTH domain containing protein, putative, expressed -
2 Sobic.007G006900 shwachman-Bodian-Diamond syndrome protein, putative, expressed K14574: SDO1, ribosome maturation protein SDO1
3 Sobic.010G249100 ZOS8-11 - C2H2 zinc finger protein, expressed -
4 Sobic.001G425800 src homology-3 domain protein 3, putative, expressed -
5 Sobic.002G134600 nucleic acid binding protein, putative, expressed -
6 Sobic.009G042700 -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed -
7 Sobic.006G131000 expressed protein K11968: ariadne-1
8 Sobic.003G278500 RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
9 Sobic.003G056100 transcription initiation factor, putative, expressed K03129: transcription initiation factor TFIID subunit 4
10 Sobic.001G096000 CWF19-like 2, cell cycle control, putative, expressed -
11 Sobic.006G052500 2-oxoglutarate dehydrogenase E1 component, mitochondrial precursor, putative, expressed K00164: OGDH, 2-oxoglutarate dehydrogenase E1 component
12 Sobic.008G046500 Cellular calcium signals(PubMedID : 19860013)@calcineurin B, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
13 Sobic.002G310200 expressed protein -
14 Sobic.008G124900 heat shock protein DnaJ, putative, expressed -
15 Sobic.001G043100 EMB1745, putative, expressed K18723: nucleoporin GLE1
16 Sobic.001G220300 serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed K11583: serine/threonine-protein phosphatase 2A regulatory subunit B''
17 Sobic.001G541100 signal recognition particle receptor, putative, expressed K13431: signal recognition particle receptor subunit alpha
18 Sobic.010G053800 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
19 Sobic.001G515000 protein-S-isoprenylcysteine O-methyltransferase. tax, putative, expressed K00587: ICMT, protein-S-isoprenylcysteine O-methyltransferase
20 Sobic.007G186900 PP2A regulatory subunit TAP46, putative, expressed -


Gene co-expression network
sample Sobic003G328600 Sobic003G328600 Sobic009G219000 Sobic009G219000 Sobic003G328600--Sobic009G219000 Sobic007G006900 Sobic007G006900 Sobic003G328600--Sobic007G006900 Sobic010G249100 Sobic010G249100 Sobic003G328600--Sobic010G249100 Sobic001G425800 Sobic001G425800 Sobic003G328600--Sobic001G425800 Sobic002G134600 Sobic002G134600 Sobic003G328600--Sobic002G134600 Sobic009G042700 Sobic009G042700 Sobic003G328600--Sobic009G042700 Sobic006G131000 Sobic006G131000 Sobic003G328600--Sobic006G131000 Sobic003G278500 Sobic003G278500 Sobic003G328600--Sobic003G278500 Sobic003G056100 Sobic003G056100 Sobic003G328600--Sobic003G056100 Sobic001G541100 Sobic001G541100 Sobic009G219000--Sobic001G541100 Sobic001G323000 Sobic001G323000 Sobic009G219000--Sobic001G323000 Sobic001G261456 Sobic001G261456 Sobic009G219000--Sobic001G261456 Sobic008G046500 Sobic008G046500 Sobic009G219000--Sobic008G046500 Sobic001G466700 Sobic001G466700 Sobic009G219000--Sobic001G466700 Sobic004G274400 Sobic004G274400 Sobic009G219000--Sobic004G274400 Sobic009G138100 Sobic009G138100 Sobic009G219000--Sobic009G138100 Sobic001G105500 Sobic001G105500 Sobic009G219000--Sobic001G105500 Sobic001G371200 Sobic001G371200 Sobic009G219000--Sobic001G371200 Sobic007G006900--Sobic002G134600 Sobic007G006900--Sobic001G425800 Sobic007G006900--Sobic003G328600 Sobic001G362200 Sobic001G362200 Sobic007G006900--Sobic001G362200 Sobic002G400200 Sobic002G400200 Sobic007G006900--Sobic002G400200 Sobic007G006900--Sobic010G249100 Sobic002G067600 Sobic002G067600 Sobic007G006900--Sobic002G067600 Sobic009G238850 Sobic009G238850 Sobic007G006900--Sobic009G238850 Sobic003G119800 Sobic003G119800 Sobic007G006900--Sobic003G119800 Sobic001G220300 Sobic001G220300 Sobic010G249100--Sobic001G220300 Sobic008G124900 Sobic008G124900 Sobic010G249100--Sobic008G124900 Sobic001G392300 Sobic001G392300 Sobic010G249100--Sobic001G392300 Sobic006G204800 Sobic006G204800 Sobic010G249100--Sobic006G204800 Sobic010G118950 Sobic010G118950 Sobic010G249100--Sobic010G118950 Sobic010G053800 Sobic010G053800 Sobic010G249100--Sobic010G053800 Sobic001G205200 Sobic001G205200 Sobic010G249100--Sobic001G205200 Sobic004G353000 Sobic004G353000 Sobic010G249100--Sobic004G353000 Sobic010G275500 Sobic010G275500 Sobic010G249100--Sobic010G275500 Sobic001G425800--Sobic002G134600 Sobic010G223700 Sobic010G223700 Sobic001G425800--Sobic010G223700 Sobic001G425800--Sobic007G006900 Sobic001G425800--Sobic008G046500 Sobic001G425800--Sobic010G249100 Sobic001G226700 Sobic001G226700 Sobic001G425800--Sobic001G226700 Sobic002G257200 Sobic002G257200 Sobic001G425800--Sobic002G257200 Sobic004G146800 Sobic004G146800 Sobic001G425800--Sobic004G146800 Sobic001G425800--Sobic008G124900 Sobic003G309200 Sobic003G309200 Sobic002G134600--Sobic003G309200 Sobic002G134600--Sobic007G006900 Sobic002G134600--Sobic001G226700 Sobic002G134600--Sobic001G425800 Sobic002G294800 Sobic002G294800 Sobic002G134600--Sobic002G294800 Sobic002G134600--Sobic001G362200 Sobic002G134600--Sobic009G219000 Sobic001G122832 Sobic001G122832 Sobic002G134600--Sobic001G122832 Sobic010G076300 Sobic010G076300 Sobic002G134600--Sobic010G076300 Sobic009G042700--Sobic010G053800 Sobic004G002400 Sobic004G002400 Sobic009G042700--Sobic004G002400 Sobic009G042700--Sobic009G219000 Sobic009G042700--Sobic001G466700 Sobic004G004300 Sobic004G004300 Sobic009G042700--Sobic004G004300 Sobic001G152280 Sobic001G152280 Sobic009G042700--Sobic001G152280 Sobic001G281100 Sobic001G281100 Sobic009G042700--Sobic001G281100 Sobic009G042700--Sobic001G220300 Sobic006G052500 Sobic006G052500 Sobic009G042700--Sobic006G052500 Sobic007G218000 Sobic007G218000 Sobic006G131000--Sobic007G218000 Sobic007G132100 Sobic007G132100 Sobic006G131000--Sobic007G132100 Sobic006G163800 Sobic006G163800 Sobic006G131000--Sobic006G163800 Sobic004G039600 Sobic004G039600 Sobic006G131000--Sobic004G039600 Sobic001G096000 Sobic001G096000 Sobic006G131000--Sobic001G096000 Sobic006G174850 Sobic006G174850 Sobic006G131000--Sobic006G174850 Sobic006G131000--Sobic010G275500 Sobic001G369000 Sobic001G369000 Sobic006G131000--Sobic001G369000 Sobic004G178200 Sobic004G178200 Sobic006G131000--Sobic004G178200 Sobic007G186900 Sobic007G186900 Sobic003G278500--Sobic007G186900 Sobic003G029700 Sobic003G029700 Sobic003G278500--Sobic003G029700 Sobic010G101800 Sobic010G101800 Sobic003G278500--Sobic010G101800 Sobic003G397800 Sobic003G397800 Sobic003G278500--Sobic003G397800 Sobic003G278500--Sobic001G152280 Sobic007G217000 Sobic007G217000 Sobic003G278500--Sobic007G217000 Sobic007G167500 Sobic007G167500 Sobic003G278500--Sobic007G167500 Sobic003G278500--Sobic003G056100 Sobic010G097600 Sobic010G097600 Sobic003G278500--Sobic010G097600 Sobic001G125200 Sobic001G125200 Sobic003G056100--Sobic001G125200 Sobic002G006900 Sobic002G006900 Sobic003G056100--Sobic002G006900 Sobic008G067600 Sobic008G067600 Sobic003G056100--Sobic008G067600 Sobic001G512700 Sobic001G512700 Sobic003G056100--Sobic001G512700 Sobic001G497300 Sobic001G497300 Sobic003G056100--Sobic001G497300 Sobic002G315200 Sobic002G315200 Sobic003G056100--Sobic002G315200 Sobic009G104201 Sobic009G104201 Sobic003G056100--Sobic009G104201 Sobic003G087400 Sobic003G087400 Sobic003G056100--Sobic003G087400 Sobic003G056100--Sobic007G217000
Octagon: transcription factors


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