Gene annotation
Transcriptome id Sobic.007G052300.3
Synonym EMB3006
Functional annotation expressed protein
UniProt A0A1Z5R931
Pfam PF03980
Panther DB PTHR15459
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G19350 : embryo defective 3006
RAP-DB (Rice) LOC_Os08g06520.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G080700 casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
2 Sobic.007G009700 nucleic acid binding protein, putative, expressed K12839: SMNDC1, survival of motor neuron-related-splicing factor 30
3 Sobic.001G332500 WRKY81, expressed -
4 Sobic.003G264200 Ser/Thr protein phosphatase family protein, putative, expressed K15498: serine/threonine-protein phosphatase 6 catalytic subunit
5 Sobic.003G352200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
6 Sobic.003G253600 protein kinase domain containing protein, expressed -
7 Sobic.010G074300 smr domain containing protein, expressed -
8 Sobic.003G316500 expressed protein -
9 Sobic.009G222500 expressed protein -
10 Sobic.006G185100 ranBP1 domain containing protein, expressed K14295: NUP50, nuclear pore complex protein Nup50
11 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
12 Sobic.010G082700 expressed protein -
13 Sobic.001G539500 SKP1, putative, expressed -
14 Sobic.002G252800 OsFBX332 - F-box domain containing protein, expressed -
15 Sobic.004G353800 expressed protein -
16 Sobic.006G169800 chaperone protein dnaJ, putative, expressed K09503: DnaJ homolog subfamily A member 2
17 Sobic.003G221900 helix-loop-helix DNA-binding domain containing protein, expressed -
18 Sobic.005G160400 zinc finger, C3HC4 type domain containing protein, expressed K19043: E3 ubiquitin-protein ligase RHF
19 Sobic.007G078600 YT521-B, putative, expressed -
20 Sobic.010G131900 Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed K15687: E3 ubiquitin-protein ligase makorin


Gene co-expression network
sample Sobic007G052300 Sobic007G052300 Sobic001G080700 Sobic001G080700 Sobic007G052300--Sobic001G080700 Sobic007G009700 Sobic007G009700 Sobic007G052300--Sobic007G009700 Sobic001G332500 Sobic001G332500 Sobic007G052300--Sobic001G332500 Sobic003G264200 Sobic003G264200 Sobic007G052300--Sobic003G264200 Sobic003G352200 Sobic003G352200 Sobic007G052300--Sobic003G352200 Sobic003G253600 Sobic003G253600 Sobic007G052300--Sobic003G253600 Sobic010G074300 Sobic010G074300 Sobic007G052300--Sobic010G074300 Sobic003G316500 Sobic003G316500 Sobic007G052300--Sobic003G316500 Sobic009G222500 Sobic009G222500 Sobic007G052300--Sobic009G222500 Sobic001G392300 Sobic001G392300 Sobic001G080700--Sobic001G392300 Sobic009G165800 Sobic009G165800 Sobic001G080700--Sobic009G165800 Sobic010G251000 Sobic010G251000 Sobic001G080700--Sobic010G251000 Sobic004G066200 Sobic004G066200 Sobic001G080700--Sobic004G066200 Sobic001G080700--Sobic003G264200 Sobic001G080700--Sobic009G222500 Sobic006G101700 Sobic006G101700 Sobic001G080700--Sobic006G101700 Sobic001G080700--Sobic001G332500 Sobic001G007000 Sobic001G007000 Sobic001G080700--Sobic001G007000 Sobic009G044800 Sobic009G044800 Sobic007G009700--Sobic009G044800 Sobic001G088100 Sobic001G088100 Sobic007G009700--Sobic001G088100 Sobic001G227400 Sobic001G227400 Sobic007G009700--Sobic001G227400 Sobic001G473600 Sobic001G473600 Sobic007G009700--Sobic001G473600 Sobic006G096900 Sobic006G096900 Sobic007G009700--Sobic006G096900 Sobic003G360400 Sobic003G360400 Sobic007G009700--Sobic003G360400 Sobic007G009700--Sobic003G352200 Sobic001G025000 Sobic001G025000 Sobic007G009700--Sobic001G025000 Sobic003G379200 Sobic003G379200 Sobic007G009700--Sobic003G379200 Sobic001G332500--Sobic001G080700 Sobic001G122832 Sobic001G122832 Sobic001G332500--Sobic001G122832 Sobic001G332500--Sobic003G253600 Sobic001G375700 Sobic001G375700 Sobic001G332500--Sobic001G375700 Sobic001G332500--Sobic001G392300 Sobic003G221900 Sobic003G221900 Sobic001G332500--Sobic003G221900 Sobic007G136800 Sobic007G136800 Sobic001G332500--Sobic007G136800 Sobic003G398700 Sobic003G398700 Sobic001G332500--Sobic003G398700 Sobic006G185100 Sobic006G185100 Sobic001G332500--Sobic006G185100 Sobic001G031100 Sobic001G031100 Sobic003G264200--Sobic001G031100 Sobic003G264200--Sobic001G080700 Sobic007G166400 Sobic007G166400 Sobic003G264200--Sobic007G166400 Sobic003G264200--Sobic009G222500 Sobic006G049700 Sobic006G049700 Sobic003G264200--Sobic006G049700 Sobic003G264200--Sobic006G101700 Sobic002G047700 Sobic002G047700 Sobic003G264200--Sobic002G047700 Sobic003G264200--Sobic009G165800 Sobic007G166100 Sobic007G166100 Sobic003G264200--Sobic007G166100 Sobic003G352200--Sobic009G044800 Sobic003G352200--Sobic001G473600 Sobic002G034600 Sobic002G034600 Sobic003G352200--Sobic002G034600 Sobic004G274200 Sobic004G274200 Sobic003G352200--Sobic004G274200 Sobic003G155900 Sobic003G155900 Sobic003G352200--Sobic003G155900 Sobic003G352200--Sobic004G066200 Sobic002G045600 Sobic002G045600 Sobic003G352200--Sobic002G045600 Sobic001G109800 Sobic001G109800 Sobic003G352200--Sobic001G109800 Sobic003G352200--Sobic001G088100 Sobic003G253600--Sobic006G185100 Sobic002G257750 Sobic002G257750 Sobic003G253600--Sobic002G257750 Sobic003G119600 Sobic003G119600 Sobic003G253600--Sobic003G119600 Sobic002G344000 Sobic002G344000 Sobic003G253600--Sobic002G344000 Sobic003G253600--Sobic001G332500 Sobic003G253600--Sobic003G316500 Sobic003G155100 Sobic003G155100 Sobic003G253600--Sobic003G155100 Sobic005G059800 Sobic005G059800 Sobic003G253600--Sobic005G059800 Sobic008G044100 Sobic008G044100 Sobic003G253600--Sobic008G044100 Sobic010G147100 Sobic010G147100 Sobic010G074300--Sobic010G147100 Sobic004G118200 Sobic004G118200 Sobic010G074300--Sobic004G118200 Sobic007G190000 Sobic007G190000 Sobic010G074300--Sobic007G190000 Sobic010G074300--Sobic001G080700 Sobic002G311100 Sobic002G311100 Sobic010G074300--Sobic002G311100 Sobic010G131900 Sobic010G131900 Sobic010G074300--Sobic010G131900 Sobic009G074400 Sobic009G074400 Sobic010G074300--Sobic009G074400 Sobic010G074300--Sobic003G316500 Sobic001G268200 Sobic001G268200 Sobic010G074300--Sobic001G268200 Sobic001G534700 Sobic001G534700 Sobic003G316500--Sobic001G534700 Sobic009G053900 Sobic009G053900 Sobic003G316500--Sobic009G053900 Sobic003G316500--Sobic009G074400 Sobic001G389100 Sobic001G389100 Sobic003G316500--Sobic001G389100 Sobic003G316500--Sobic010G147100 Sobic001G365900 Sobic001G365900 Sobic003G316500--Sobic001G365900 Sobic009G165700 Sobic009G165700 Sobic003G316500--Sobic009G165700 Sobic001G451400 Sobic001G451400 Sobic003G316500--Sobic001G451400 Sobic010G206900 Sobic010G206900 Sobic003G316500--Sobic010G206900 Sobic009G075800 Sobic009G075800 Sobic009G222500--Sobic009G075800 Sobic009G222500--Sobic006G049700 Sobic009G222500--Sobic001G080700 Sobic009G222500--Sobic006G101700 Sobic009G222500--Sobic004G066200 Sobic009G222500--Sobic007G166400 Sobic010G027600 Sobic010G027600 Sobic009G222500--Sobic010G027600 Sobic009G222500--Sobic003G264200 Sobic004G235000 Sobic004G235000 Sobic009G222500--Sobic004G235000
Octagon: transcription factors


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