Gene annotation
Transcriptome id Sobic.007G025900.1
Synonym Sb07g002265, LHT1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
amino acid transporter, putative, expressed
UniProt A0A1B6PF57
Pfam PF03222
Panther DB PTHR22950 PTHR22950:SF235
NCBI CDD KOG1303; Amino acid transporters
KEGG Orthology -
Gene Ontology GO:0003333; amino acid transmembrane transport


Orthologs (automatic annotation)
TAIR AT5G40780 : lysine histidine transporter 1
RAP-DB (Rice) LOC_Os08g03350.1 : amino acid transporter, putative, expressed
MaizeGDB (Corn) Zm00025a040346 , Zm00025a040345 , Zm00025a040343 , Zm00025a030209 , Zm00025a040337 , Zm00025a054737 , Zm00025a040338 , Zm00025a040344 , Zm00025a009656
Brachypodium PNT63500 , PNT63501 , PNT76283 , PNT71577 , KQJ94928 , KQJ94929
Barley HORVU1Hr1G011920.2 , HORVU1Hr1G011920.1 , HORVU7Hr1G032060.4 , HORVU7Hr1G032060.5 , HORVU7Hr1G032060.2 , HORVU7Hr1G032060.3 , HORVU7Hr1G032060.1 , HORVU7Hr1G074640.12 , HORVU7Hr1G074640.13 , HORVU7Hr1G074640.10 , HORVU7Hr1G074640.11 , HORVU7Hr1G074640.16 , HORVU7Hr1G074640.17 , HORVU7Hr1G074640.14 , HORVU7Hr1G074640.15 , HORVU7Hr1G074640.18 , HORVU7Hr1G074640.19 , HORVU7Hr1G074640.8 , HORVU7Hr1G074640.9 , HORVU7Hr1G074640.2 , HORVU7Hr1G074640.3 , HORVU7Hr1G074640.4 , HORVU7Hr1G074640.5 , HORVU7Hr1G074640.6 , HORVU7Hr1G074640.7 , HORVU7Hr1G074640.23 , HORVU7Hr1G074640.22 , HORVU7Hr1G074640.21 , HORVU7Hr1G074640.20 , HORVU7Hr1G074660.6 , HORVU7Hr1G074660.7 , HORVU7Hr1G074660.4 , HORVU7Hr1G074660.5 , HORVU7Hr1G074660.2 , HORVU7Hr1G074660.3 , HORVU7Hr1G074660.1 , HORVU7Hr1G074660.8 , HORVU7Hr1G074660.9 , HORVU2Hr1G123160.3 , HORVU2Hr1G123160.2 , HORVU2Hr1G123160.1 , HORVU2Hr1G123160.7 , HORVU2Hr1G123160.6 , HORVU2Hr1G123160.5 , HORVU2Hr1G123160.4 , HORVU7Hr1G074660.10 , HORVU7Hr1G074660.11 , HORVU7Hr1G074660.12
Wheat TraesCS7B02G060400 , TraesCS7D02G309200 , TraesCS7A02G312800 , TraesCS7D02G157000 , TraesCS2A02G584328 , TraesCS7A02G313000 , TraesCS7B02G213000 , TraesCS2B02G602449 , TraesCS7A02G156600 , TraesCS7B02G212500 , TraesCS7D02G309400 , TraesCS2D02G595500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G099700 receptor-like protein kinase 5 precursor, putative, expressed -
2 Sobic.002G201900 transporter family protein, putative, expressed -
3 Sobic.006G065900 expressed protein -
4 Sobic.010G273700 no apical meristem protein, putative, expressed -
5 Sobic.005G119100 OsFBX70 - F-box domain containing protein, expressed -
6 Sobic.008G060300 transcription factor(PubMedID : 30367619)@WRKY45, expressed -
7 Sobic.005G045200 homeobox domain containing protein, expressed -
8 Sobic.003G366100 expressed protein -
9 Sobic.001G404500 gamma-interferon-inducible lysosomal thiol reductase precursor, putative, expressed K08059: IFI30, interferon, gamma-inducible protein 30
10 Sobic.003G423200 NAM, putative, expressed -
11 Sobic.006G123500 peptide methionine sulfoxide reductase, putative, expressed K07304: peptide-methionine (S)-S-oxide reductase
12 Sobic.003G246200 DUF1645 domain containing protein, putative, expressed -
13 Sobic.003G339900 expressed protein -
14 Sobic.004G063200 B-box (BBX) protein(PubMedID : 30626335)@CCT/B-box zinc finger protein, putative, expressed -
15 Sobic.003G410900 CRAL/TRIO domain containing protein, expressed -
16 Sobic.003G397600 expressed protein -
17 Sobic.006G060800 basic proline-rich protein, putative, expressed -
18 Sobic.002G200700 expressed protein -
19 Sobic.009G023401 - -
20 Sobic.001G414000 TKL_IRAK_CrRLK1L-1.7 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -


Gene co-expression network
sample Sobic007G025900 Sobic007G025900 Sobic004G099700 Sobic004G099700 Sobic007G025900--Sobic004G099700 Sobic002G201900 Sobic002G201900 Sobic007G025900--Sobic002G201900 Sobic006G065900 Sobic006G065900 Sobic007G025900--Sobic006G065900 Sobic010G273700 Sobic010G273700 Sobic007G025900--Sobic010G273700 Sobic005G119100 Sobic005G119100 Sobic007G025900--Sobic005G119100 Sobic008G060300 Sobic008G060300 Sobic007G025900--Sobic008G060300 Sobic005G045200 Sobic005G045200 Sobic007G025900--Sobic005G045200 Sobic003G366100 Sobic003G366100 Sobic007G025900--Sobic003G366100 Sobic001G404500 Sobic001G404500 Sobic007G025900--Sobic001G404500 Sobic006G123500 Sobic006G123500 Sobic004G099700--Sobic006G123500 Sobic004G099700--Sobic001G404500 Sobic004G099700--Sobic007G025900 Sobic004G099700--Sobic008G060300 Sobic004G063200 Sobic004G063200 Sobic004G099700--Sobic004G063200 Sobic003G410900 Sobic003G410900 Sobic004G099700--Sobic003G410900 Sobic008G065200 Sobic008G065200 Sobic004G099700--Sobic008G065200 Sobic006G164300 Sobic006G164300 Sobic004G099700--Sobic006G164300 Sobic010G193000 Sobic010G193000 Sobic004G099700--Sobic010G193000 Sobic002G200700 Sobic002G200700 Sobic002G201900--Sobic002G200700 Sobic002G201900--Sobic007G025900 Sobic006G130000 Sobic006G130000 Sobic002G201900--Sobic006G130000 Sobic003G246200 Sobic003G246200 Sobic002G201900--Sobic003G246200 Sobic002G201900--Sobic006G065900 Sobic006G064200 Sobic006G064200 Sobic002G201900--Sobic006G064200 Sobic003G397600 Sobic003G397600 Sobic002G201900--Sobic003G397600 Sobic003G224100 Sobic003G224100 Sobic002G201900--Sobic003G224100 Sobic007G141700 Sobic007G141700 Sobic002G201900--Sobic007G141700 Sobic006G065900--Sobic007G025900 Sobic001G351400 Sobic001G351400 Sobic006G065900--Sobic001G351400 Sobic004G251300 Sobic004G251300 Sobic006G065900--Sobic004G251300 Sobic006G065900--Sobic002G201900 Sobic005G072200 Sobic005G072200 Sobic006G065900--Sobic005G072200 Sobic003G002600 Sobic003G002600 Sobic006G065900--Sobic003G002600 Sobic003G359900 Sobic003G359900 Sobic006G065900--Sobic003G359900 Sobic010G063200 Sobic010G063200 Sobic006G065900--Sobic010G063200 Sobic006G065900--Sobic005G045200 Sobic009G227800 Sobic009G227800 Sobic010G273700--Sobic009G227800 Sobic003G138400 Sobic003G138400 Sobic010G273700--Sobic003G138400 Sobic003G109832 Sobic003G109832 Sobic010G273700--Sobic003G109832 Sobic010G273700--Sobic007G025900 Sobic007G215500 Sobic007G215500 Sobic010G273700--Sobic007G215500 Sobic004G006500 Sobic004G006500 Sobic010G273700--Sobic004G006500 Sobic003G376200 Sobic003G376200 Sobic010G273700--Sobic003G376200 Sobic004G220600 Sobic004G220600 Sobic010G273700--Sobic004G220600 Sobic001G314300 Sobic001G314300 Sobic010G273700--Sobic001G314300 Sobic005G207000 Sobic005G207000 Sobic005G119100--Sobic005G207000 Sobic003G339900 Sobic003G339900 Sobic005G119100--Sobic003G339900 Sobic005G119100--Sobic007G025900 Sobic005G119100--Sobic004G099700 Sobic007G129201 Sobic007G129201 Sobic005G119100--Sobic007G129201 Sobic005G119100--Sobic008G060300 Sobic005G119100--Sobic003G376200 Sobic004G092000 Sobic004G092000 Sobic005G119100--Sobic004G092000 Sobic005G119100--Sobic006G065900 Sobic006G060800 Sobic006G060800 Sobic008G060300--Sobic006G060800 Sobic009G252100 Sobic009G252100 Sobic008G060300--Sobic009G252100 Sobic005G193600 Sobic005G193600 Sobic008G060300--Sobic005G193600 Sobic001G201800 Sobic001G201800 Sobic008G060300--Sobic001G201800 Sobic002G202700 Sobic002G202700 Sobic008G060300--Sobic002G202700 Sobic008G060300--Sobic007G129201 Sobic005G193500 Sobic005G193500 Sobic008G060300--Sobic005G193500 Sobic004G195800 Sobic004G195800 Sobic008G060300--Sobic004G195800 Sobic008G060300--Sobic003G366100 Sobic003G378301 Sobic003G378301 Sobic005G045200--Sobic003G378301 Sobic004G068800 Sobic004G068800 Sobic005G045200--Sobic004G068800 Sobic005G045200--Sobic006G060800 Sobic010G130800 Sobic010G130800 Sobic005G045200--Sobic010G130800 Sobic004G217700 Sobic004G217700 Sobic005G045200--Sobic004G217700 Sobic005G045200--Sobic003G366100 Sobic001G145050 Sobic001G145050 Sobic005G045200--Sobic001G145050 Sobic005G045200--Sobic007G025900 Sobic005G045200--Sobic003G410900 Sobic003G366100--Sobic008G060300 Sobic003G310200 Sobic003G310200 Sobic003G366100--Sobic003G310200 Sobic007G089300 Sobic007G089300 Sobic003G366100--Sobic007G089300 Sobic002G173900 Sobic002G173900 Sobic003G366100--Sobic002G173900 Sobic003G366100--Sobic005G193600 Sobic003G366100--Sobic002G202700 Sobic001G012000 Sobic001G012000 Sobic003G366100--Sobic001G012000 Sobic003G366100--Sobic003G378301 Sobic003G366100--Sobic010G130800 Sobic001G404500--Sobic006G123500 Sobic001G404500--Sobic004G063200 Sobic002G281000 Sobic002G281000 Sobic001G404500--Sobic002G281000 Sobic008G063100 Sobic008G063100 Sobic001G404500--Sobic008G063100 Sobic001G525900 Sobic001G525900 Sobic001G404500--Sobic001G525900 Sobic001G404500--Sobic003G410900 Sobic004G268500 Sobic004G268500 Sobic001G404500--Sobic004G268500 Sobic009G189000 Sobic009G189000 Sobic001G404500--Sobic009G189000 Sobic001G404500--Sobic004G099700
Octagon: transcription factors


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