Gene annotation
Transcriptome id Sobic.003G246200.1
Synonym Sb03g030250
Functional annotation DUF1645 domain containing protein, putative, expressed
UniProt C5XFW7
Pfam PF07816
Panther DB PTHR33095 PTHR33095:SF8
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G62770 : Protein of unknown function (DUF1645)
RAP-DB (Rice) LOC_Os01g47270.1 : DUF1645 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a028161 , Zm00025a044620
Brachypodium KQK09047
Barley HORVU1Hr1G089860.2 , HORVU1Hr1G089860.1 , HORVU1Hr1G089840.1
Wheat -
Populus -


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cDNA sequences
Sobic.003G246200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G201900 transporter family protein, putative, expressed -
2 Sobic.007G025900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
3 Sobic.006G065900 expressed protein -
4 Sobic.006G130000 STRUBBELIG-RECEPTOR FAMILY 8 precursor, putative, expressed K13436: pto-interacting protein 1
5 Sobic.002G200700 expressed protein -
6 Sobic.001G414000 TKL_IRAK_CrRLK1L-1.7 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
7 Sobic.006G064200 expressed protein -
8 Sobic.001G314400 OsMADS56 - MADS-box family gene with MIKCc type-box, expressed -
9 Sobic.003G002600 -(PubMedID : 23001790)@GLK2(PubMedID : 24676859)@GLK genes are members of the GARP superfamily and functions in a BS or M cell-type specific manner to regulate the proplastid to chloroplast transition(PubMedID : 22968911)@myb-like DNA-binding domain containing protein, expressed -
10 Sobic.003G375900 amino acid transporter, putative, expressed -
11 Sobic.003G423200 NAM, putative, expressed -
12 Sobic.005G072200 lipase, putative, expressed -
13 Sobic.003G224100 "domain confirmed by Pfam database, expressed in leaf and root"(PubMedID : 20499123)@OsGH3.5 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
14 Sobic.005G142700 heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed -
15 Sobic.004G340800 OsFBX70 - F-box domain containing protein, expressed -
16 Sobic.001G404500 gamma-interferon-inducible lysosomal thiol reductase precursor, putative, expressed K08059: IFI30, interferon, gamma-inducible protein 30
17 Sobic.003G339900 expressed protein -
18 Sobic.003G359900 C2 domain containing protein, expressed -
19 Sobic.005G119100 OsFBX70 - F-box domain containing protein, expressed -
20 Sobic.004G254000 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G246200 Sobic003G246200 Sobic002G201900 Sobic002G201900 Sobic003G246200--Sobic002G201900 Sobic007G025900 Sobic007G025900 Sobic003G246200--Sobic007G025900 Sobic006G065900 Sobic006G065900 Sobic003G246200--Sobic006G065900 Sobic006G130000 Sobic006G130000 Sobic003G246200--Sobic006G130000 Sobic002G200700 Sobic002G200700 Sobic003G246200--Sobic002G200700 Sobic001G414000 Sobic001G414000 Sobic003G246200--Sobic001G414000 Sobic006G064200 Sobic006G064200 Sobic003G246200--Sobic006G064200 Sobic001G314400 Sobic001G314400 Sobic003G246200--Sobic001G314400 Sobic003G002600 Sobic003G002600 Sobic003G246200--Sobic003G002600 Sobic002G201900--Sobic002G200700 Sobic002G201900--Sobic007G025900 Sobic002G201900--Sobic006G130000 Sobic002G201900--Sobic003G246200 Sobic002G201900--Sobic006G065900 Sobic002G201900--Sobic006G064200 Sobic003G397600 Sobic003G397600 Sobic002G201900--Sobic003G397600 Sobic003G224100 Sobic003G224100 Sobic002G201900--Sobic003G224100 Sobic007G141700 Sobic007G141700 Sobic002G201900--Sobic007G141700 Sobic004G099700 Sobic004G099700 Sobic007G025900--Sobic004G099700 Sobic007G025900--Sobic002G201900 Sobic007G025900--Sobic006G065900 Sobic010G273700 Sobic010G273700 Sobic007G025900--Sobic010G273700 Sobic005G119100 Sobic005G119100 Sobic007G025900--Sobic005G119100 Sobic008G060300 Sobic008G060300 Sobic007G025900--Sobic008G060300 Sobic005G045200 Sobic005G045200 Sobic007G025900--Sobic005G045200 Sobic003G366100 Sobic003G366100 Sobic007G025900--Sobic003G366100 Sobic001G404500 Sobic001G404500 Sobic007G025900--Sobic001G404500 Sobic006G065900--Sobic007G025900 Sobic001G351400 Sobic001G351400 Sobic006G065900--Sobic001G351400 Sobic004G251300 Sobic004G251300 Sobic006G065900--Sobic004G251300 Sobic006G065900--Sobic002G201900 Sobic005G072200 Sobic005G072200 Sobic006G065900--Sobic005G072200 Sobic006G065900--Sobic003G002600 Sobic003G359900 Sobic003G359900 Sobic006G065900--Sobic003G359900 Sobic010G063200 Sobic010G063200 Sobic006G065900--Sobic010G063200 Sobic006G065900--Sobic005G045200 Sobic006G130000--Sobic006G064200 Sobic006G055000 Sobic006G055000 Sobic006G130000--Sobic006G055000 Sobic008G033200 Sobic008G033200 Sobic006G130000--Sobic008G033200 Sobic006G130000--Sobic002G201900 Sobic006G130000--Sobic002G200700 Sobic005G089600 Sobic005G089600 Sobic006G130000--Sobic005G089600 Sobic006G130000--Sobic007G141700 Sobic002G232200 Sobic002G232200 Sobic006G130000--Sobic002G232200 Sobic006G130000--Sobic003G224100 Sobic002G200700--Sobic003G224100 Sobic002G001000 Sobic002G001000 Sobic002G200700--Sobic002G001000 Sobic002G200700--Sobic002G201900 Sobic003G007700 Sobic003G007700 Sobic002G200700--Sobic003G007700 Sobic002G200700--Sobic006G064200 Sobic010G269400 Sobic010G269400 Sobic002G200700--Sobic010G269400 Sobic002G136100 Sobic002G136100 Sobic002G200700--Sobic002G136100 Sobic002G200700--Sobic006G130000 Sobic006G258700 Sobic006G258700 Sobic002G200700--Sobic006G258700 Sobic003G375900 Sobic003G375900 Sobic001G414000--Sobic003G375900 Sobic001G525900 Sobic001G525900 Sobic001G414000--Sobic001G525900 Sobic001G121100 Sobic001G121100 Sobic001G414000--Sobic001G121100 Sobic003G262900 Sobic003G262900 Sobic001G414000--Sobic003G262900 Sobic002G257100 Sobic002G257100 Sobic001G414000--Sobic002G257100 Sobic004G063200 Sobic004G063200 Sobic001G414000--Sobic004G063200 Sobic005G093300 Sobic005G093300 Sobic001G414000--Sobic005G093300 Sobic001G019300 Sobic001G019300 Sobic001G414000--Sobic001G019300 Sobic001G414000--Sobic001G404500 Sobic006G064200--Sobic006G130000 Sobic006G064200--Sobic002G200700 Sobic004G151500 Sobic004G151500 Sobic006G064200--Sobic004G151500 Sobic006G064200--Sobic003G224100 Sobic006G011300 Sobic006G011300 Sobic006G064200--Sobic006G011300 Sobic006G064200--Sobic002G201900 Sobic003G334000 Sobic003G334000 Sobic006G064200--Sobic003G334000 Sobic006G064200--Sobic005G089600 Sobic004G154400 Sobic004G154400 Sobic006G064200--Sobic004G154400 Sobic002G001900 Sobic002G001900 Sobic001G314400--Sobic002G001900 Sobic001G314400--Sobic003G397600 Sobic005G142700 Sobic005G142700 Sobic001G314400--Sobic005G142700 Sobic003G223400 Sobic003G223400 Sobic001G314400--Sobic003G223400 Sobic003G329700 Sobic003G329700 Sobic001G314400--Sobic003G329700 Sobic001G448300 Sobic001G448300 Sobic001G314400--Sobic001G448300 Sobic002G272700 Sobic002G272700 Sobic001G314400--Sobic002G272700 Sobic006G036300 Sobic006G036300 Sobic001G314400--Sobic006G036300 Sobic006G123500 Sobic006G123500 Sobic001G314400--Sobic006G123500 Sobic003G162100 Sobic003G162100 Sobic003G002600--Sobic003G162100 Sobic003G403500 Sobic003G403500 Sobic003G002600--Sobic003G403500 Sobic001G236400 Sobic001G236400 Sobic003G002600--Sobic001G236400 Sobic004G131900 Sobic004G131900 Sobic003G002600--Sobic004G131900 Sobic005G012200 Sobic005G012200 Sobic003G002600--Sobic005G012200 Sobic003G002600--Sobic006G065900 Sobic003G002600--Sobic002G201900 Sobic003G002600--Sobic004G251300 Sobic003G002600--Sobic001G414000
Octagon: transcription factors


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