Gene annotation
Transcriptome id Sobic.007G105400.1
Synonym Sb07g014850
Functional annotation ubiquitin-conjugating enzyme, putative, expressed
UniProt C5YK67
Pfam PF00179
Panther DB PTHR24067 PTHR24067:SF131
NCBI CDD KOG0420; Ubiquitin-protein ligase
KEGG Orthology K10579; UBE2M, ubiquitin-conjugating enzyme E2 M
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G18600 : Ubiquitin-conjugating enzyme family protein
RAP-DB (Rice) LOC_Os08g28680.1 : ubiquitin-conjugating enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a018359
Brachypodium KQJ98159 , KQJ98160 , KQJ98161 , KQJ98162 , PNT68036
Barley HORVU6Hr1G003170.5 , HORVU6Hr1G003170.4 , HORVU6Hr1G003170.1 , HORVU6Hr1G003170.3 , HORVU6Hr1G003170.2
Wheat TraesCS5D02G187200 , TraesCS6A02G016200 , TraesCS6D02G019200 , TraesCS5B02G180900 , TraesCS5A02G182800
Populus -


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cDNA sequences
Sobic.007G105400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G203300 CDK-activating kinase assembly factor MAT1 family protein, expressed K10842: CDK-activating kinase assembly factor MAT1
2 Sobic.003G086900 C2 domain containing protein, putative, expressed -
3 Sobic.004G131900 - -
4 Sobic.004G306500 OsMADS22 - MADS-box family gene with MIKCc type-box, expressed -
5 Sobic.010G196500 zinc-binding protein, putative, expressed -
6 Sobic.001G298700 - -
7 Sobic.007G056600 expressed protein -
8 Sobic.010G262500 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase
9 Sobic.006G175800 acyl-CoA thioesterase 2, putative, expressed K01068: acyl-coenzyme A thioesterase 1/2/4
10 Sobic.003G110000 TBC domain containing protein, expressed -
11 Sobic.005G126600 OsFBL55 - F-box domain and LRR containing protein, expressed -
12 Sobic.001G034300 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
13 Sobic.002G373100 strictosidine synthase, putative, expressed -
14 Sobic.003G302900 transcriptional regulator family protein, putative, expressed -
15 Sobic.008G003900 - -
16 Sobic.002G193100 expressed protein -
17 Sobic.003G362600 AT hook motif family protein, expressed K15200: general transcription factor 3C polypeptide 2
18 Sobic.004G233200 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
19 Sobic.001G488700 sucrose transporter 2(PubMedID : 26465154)@sucrose transporter 2(PubMedID : 26465154)@sucrose transporters("PubMedID : 27986867,PubMedID : 23805151")@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@sucrose transporter, putativ, expressed K15378: solute carrier family 45, member 1/2/4
20 Sobic.009G110000 phospholipase D p1, putative, expressed -


Gene co-expression network
sample Sobic007G105400 Sobic007G105400 Sobic007G203300 Sobic007G203300 Sobic007G105400--Sobic007G203300 Sobic003G086900 Sobic003G086900 Sobic007G105400--Sobic003G086900 Sobic004G131900 Sobic004G131900 Sobic007G105400--Sobic004G131900 Sobic004G306500 Sobic004G306500 Sobic007G105400--Sobic004G306500 Sobic010G196500 Sobic010G196500 Sobic007G105400--Sobic010G196500 Sobic001G298700 Sobic001G298700 Sobic007G105400--Sobic001G298700 Sobic007G056600 Sobic007G056600 Sobic007G105400--Sobic007G056600 Sobic010G262500 Sobic010G262500 Sobic007G105400--Sobic010G262500 Sobic006G175800 Sobic006G175800 Sobic007G105400--Sobic006G175800 Sobic007G203300--Sobic007G056600 Sobic006G033200 Sobic006G033200 Sobic007G203300--Sobic006G033200 Sobic006G180000 Sobic006G180000 Sobic007G203300--Sobic006G180000 Sobic003G302900 Sobic003G302900 Sobic007G203300--Sobic003G302900 Sobic004G261600 Sobic004G261600 Sobic007G203300--Sobic004G261600 Sobic003G110000 Sobic003G110000 Sobic007G203300--Sobic003G110000 Sobic009G109925 Sobic009G109925 Sobic007G203300--Sobic009G109925 Sobic006G126100 Sobic006G126100 Sobic007G203300--Sobic006G126100 Sobic001G079200 Sobic001G079200 Sobic007G203300--Sobic001G079200 Sobic007G193700 Sobic007G193700 Sobic003G086900--Sobic007G193700 Sobic006G225900 Sobic006G225900 Sobic003G086900--Sobic006G225900 Sobic003G086900--Sobic010G196500 Sobic004G174200 Sobic004G174200 Sobic003G086900--Sobic004G174200 Sobic001G016700 Sobic001G016700 Sobic003G086900--Sobic001G016700 Sobic001G390800 Sobic001G390800 Sobic003G086900--Sobic001G390800 Sobic001G268200 Sobic001G268200 Sobic003G086900--Sobic001G268200 Sobic001G121200 Sobic001G121200 Sobic003G086900--Sobic001G121200 Sobic003G422500 Sobic003G422500 Sobic003G086900--Sobic003G422500 Sobic004G131900--Sobic001G298700 Sobic003G002600 Sobic003G002600 Sobic004G131900--Sobic003G002600 Sobic004G131900--Sobic010G262500 Sobic004G131900--Sobic006G175800 Sobic003G403500 Sobic003G403500 Sobic004G131900--Sobic003G403500 Sobic001G500800 Sobic001G500800 Sobic004G131900--Sobic001G500800 Sobic004G131900--Sobic010G196500 Sobic001G488700 Sobic001G488700 Sobic004G131900--Sobic001G488700 Sobic004G131900--Sobic007G105400 Sobic001G481900 Sobic001G481900 Sobic004G306500--Sobic001G481900 Sobic002G187700 Sobic002G187700 Sobic004G306500--Sobic002G187700 Sobic007G020600 Sobic007G020600 Sobic004G306500--Sobic007G020600 Sobic004G306500--Sobic003G086900 Sobic004G306500--Sobic010G196500 Sobic009G161550 Sobic009G161550 Sobic004G306500--Sobic009G161550 Sobic001G128300 Sobic001G128300 Sobic004G306500--Sobic001G128300 Sobic004G091100 Sobic004G091100 Sobic004G306500--Sobic004G091100 Sobic004G169000 Sobic004G169000 Sobic004G306500--Sobic004G169000 Sobic010G196500--Sobic001G488700 Sobic010G196500--Sobic001G500800 Sobic010G196500--Sobic003G086900 Sobic002G193100 Sobic002G193100 Sobic010G196500--Sobic002G193100 Sobic007G084300 Sobic007G084300 Sobic010G196500--Sobic007G084300 Sobic002G386100 Sobic002G386100 Sobic010G196500--Sobic002G386100 Sobic008G146900 Sobic008G146900 Sobic010G196500--Sobic008G146900 Sobic001G381200 Sobic001G381200 Sobic010G196500--Sobic001G381200 Sobic010G196500--Sobic002G187700 Sobic001G298700--Sobic010G262500 Sobic005G221250 Sobic005G221250 Sobic001G298700--Sobic005G221250 Sobic004G233200 Sobic004G233200 Sobic001G298700--Sobic004G233200 Sobic001G298700--Sobic003G086900 Sobic001G298700--Sobic001G488700 Sobic001G298700--Sobic004G131900 Sobic001G298700--Sobic006G175800 Sobic001G298700--Sobic002G187700 Sobic001G298700--Sobic010G196500 Sobic007G056600--Sobic004G261600 Sobic004G228800 Sobic004G228800 Sobic007G056600--Sobic004G228800 Sobic007G056600--Sobic007G203300 Sobic010G232600 Sobic010G232600 Sobic007G056600--Sobic010G232600 Sobic006G077300 Sobic006G077300 Sobic007G056600--Sobic006G077300 Sobic004G124500 Sobic004G124500 Sobic007G056600--Sobic004G124500 Sobic003G126300 Sobic003G126300 Sobic007G056600--Sobic003G126300 Sobic003G119700 Sobic003G119700 Sobic007G056600--Sobic003G119700 Sobic001G251200 Sobic001G251200 Sobic007G056600--Sobic001G251200 Sobic010G262500--Sobic006G175800 Sobic010G262500--Sobic001G298700 Sobic010G262500--Sobic005G221250 Sobic003G331300 Sobic003G331300 Sobic010G262500--Sobic003G331300 Sobic005G150350 Sobic005G150350 Sobic010G262500--Sobic005G150350 Sobic010G013200 Sobic010G013200 Sobic010G262500--Sobic010G013200 Sobic003G112800 Sobic003G112800 Sobic010G262500--Sobic003G112800 Sobic008G059100 Sobic008G059100 Sobic010G262500--Sobic008G059100 Sobic010G262500--Sobic001G488700 Sobic006G175800--Sobic010G262500 Sobic006G175800--Sobic004G169000 Sobic002G305000 Sobic002G305000 Sobic006G175800--Sobic002G305000 Sobic006G175800--Sobic002G187700 Sobic006G175800--Sobic001G488700 Sobic003G190400 Sobic003G190400 Sobic006G175800--Sobic003G190400 Sobic003G043300 Sobic003G043300 Sobic006G175800--Sobic003G043300 Sobic006G175800--Sobic001G500800 Sobic006G175800--Sobic010G196500
Octagon: transcription factors


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