Gene annotation
Transcriptome id Sobic.005G126600.1
Synonym Sb05g018860, AFB2
Functional annotation OsFBL55 - F-box domain and LRR containing protein, expressed
UniProt C5Y2S5
Pfam -
Panther DB PTHR24006 PTHR24006:SF456
NCBI CDD KOG1947; Leucine rich repeat proteins, some proteins contain F-box
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G12820 : auxin signaling F-box 3
RAP-DB (Rice) LOC_Os11g31620.1 : OsFBL55 - F-box domain and LRR containing protein, expressed
MaizeGDB (Corn) Zm00025a015660
Brachypodium KQJ88451 , KQJ88453 , KQJ88452 , KQJ88454
Barley HORVU6Hr1G021040.15 , HORVU6Hr1G021040.14 , HORVU6Hr1G021040.17 , HORVU6Hr1G021040.16 , HORVU6Hr1G021040.11 , HORVU6Hr1G021040.10 , HORVU6Hr1G021040.13 , HORVU6Hr1G021040.12 , HORVU6Hr1G021040.19 , HORVU6Hr1G021040.18 , HORVU5Hr1G075620.8 , HORVU5Hr1G075620.7 , HORVU5Hr1G075620.6 , HORVU5Hr1G075620.5 , HORVU5Hr1G075620.4 , HORVU5Hr1G075620.3 , HORVU5Hr1G075620.2 , HORVU5Hr1G075620.1 , HORVU6Hr1G021040.1 , HORVU6Hr1G021040.3 , HORVU6Hr1G021040.2 , HORVU6Hr1G021040.5 , HORVU6Hr1G021040.4 , HORVU6Hr1G021040.7 , HORVU6Hr1G021040.6 , HORVU6Hr1G021040.9 , HORVU6Hr1G021040.8 , HORVU6Hr1G021040.27 , HORVU6Hr1G021040.20 , HORVU6Hr1G021040.21 , HORVU6Hr1G021040.22 , HORVU6Hr1G021040.23 , HORVU6Hr1G021040.24 , HORVU6Hr1G021040.25 , HORVU6Hr1G021040.26 , HORVU6Hr1G021040.28 , HORVU6Hr1G021040.29
Wheat TraesCS5A02G281100 , TraesCS5D02G288000 , TraesCS5B02G280100
Populus -


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cDNA sequences
Sobic.005G126600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G278200 expressed protein -
2 Sobic.003G316500 expressed protein -
3 Sobic.002G045600 transcriptional corepressor SEUSS, putative, expressed -
4 Sobic.010G147100 VHS and GAT domain containing protein, expressed -
5 Sobic.001G050200 expressed protein -
6 Sobic.005G100700 mRNA-capping enzyme, putative, expressed -
7 Sobic.003G372500 DUF803 domain containing, putative, expressed -
8 Sobic.003G221900 helix-loop-helix DNA-binding domain containing protein, expressed -
9 Sobic.004G200200 joka2, putative, expressed K17987: next to BRCA1 gene 1 protein
10 Sobic.009G053900 HECT-domain domain containing protein, expressed K10589: ubiquitin-protein ligase E3 C
11 Sobic.007G223000 hypothetical protein -
12 Sobic.010G226000 expressed protein -
13 Sobic.001G441400 transcription factor, putative, expressed K09060: plant G-box-binding factor
14 Sobic.001G261501 - -
15 Sobic.010G167900 expressed protein K14376: poly(A) polymerase
16 Sobic.003G352200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
17 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
18 Sobic.003G118200 phosphoadenosine phosphosulfate, putative, expressed -
19 Sobic.010G021500 WD domain, G-beta repeat domain containing protein, expressed -
20 Sobic.001G534700 plus-3 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic005G126600 Sobic005G126600 Sobic010G278200 Sobic010G278200 Sobic005G126600--Sobic010G278200 Sobic003G316500 Sobic003G316500 Sobic005G126600--Sobic003G316500 Sobic002G045600 Sobic002G045600 Sobic005G126600--Sobic002G045600 Sobic010G147100 Sobic010G147100 Sobic005G126600--Sobic010G147100 Sobic001G050200 Sobic001G050200 Sobic005G126600--Sobic001G050200 Sobic005G100700 Sobic005G100700 Sobic005G126600--Sobic005G100700 Sobic003G372500 Sobic003G372500 Sobic005G126600--Sobic003G372500 Sobic003G221900 Sobic003G221900 Sobic005G126600--Sobic003G221900 Sobic004G200200 Sobic004G200200 Sobic005G126600--Sobic004G200200 Sobic010G278200--Sobic010G147100 Sobic009G138100 Sobic009G138100 Sobic010G278200--Sobic009G138100 Sobic010G130000 Sobic010G130000 Sobic010G278200--Sobic010G130000 Sobic001G124200 Sobic001G124200 Sobic010G278200--Sobic001G124200 Sobic006G033200 Sobic006G033200 Sobic010G278200--Sobic006G033200 Sobic010G278200--Sobic005G126600 Sobic003G118200 Sobic003G118200 Sobic010G278200--Sobic003G118200 Sobic010G278200--Sobic003G316500 Sobic008G124900 Sobic008G124900 Sobic010G278200--Sobic008G124900 Sobic001G534700 Sobic001G534700 Sobic003G316500--Sobic001G534700 Sobic009G053900 Sobic009G053900 Sobic003G316500--Sobic009G053900 Sobic009G074400 Sobic009G074400 Sobic003G316500--Sobic009G074400 Sobic001G389100 Sobic001G389100 Sobic003G316500--Sobic001G389100 Sobic003G316500--Sobic010G147100 Sobic001G365900 Sobic001G365900 Sobic003G316500--Sobic001G365900 Sobic009G165700 Sobic009G165700 Sobic003G316500--Sobic009G165700 Sobic001G451400 Sobic001G451400 Sobic003G316500--Sobic001G451400 Sobic010G206900 Sobic010G206900 Sobic003G316500--Sobic010G206900 Sobic003G408600 Sobic003G408600 Sobic002G045600--Sobic003G408600 Sobic009G027300 Sobic009G027300 Sobic002G045600--Sobic009G027300 Sobic009G044800 Sobic009G044800 Sobic002G045600--Sobic009G044800 Sobic007G163100 Sobic007G163100 Sobic002G045600--Sobic007G163100 Sobic003G360400 Sobic003G360400 Sobic002G045600--Sobic003G360400 Sobic001G313700 Sobic001G313700 Sobic002G045600--Sobic001G313700 Sobic002G045600--Sobic004G200200 Sobic001G207000 Sobic001G207000 Sobic002G045600--Sobic001G207000 Sobic003G422500 Sobic003G422500 Sobic002G045600--Sobic003G422500 Sobic010G147100--Sobic003G316500 Sobic010G147100--Sobic010G278200 Sobic010G074300 Sobic010G074300 Sobic010G147100--Sobic010G074300 Sobic003G313500 Sobic003G313500 Sobic010G147100--Sobic003G313500 Sobic001G390800 Sobic001G390800 Sobic010G147100--Sobic001G390800 Sobic002G311100 Sobic002G311100 Sobic010G147100--Sobic002G311100 Sobic010G147100--Sobic009G053900 Sobic001G268200 Sobic001G268200 Sobic010G147100--Sobic001G268200 Sobic010G147100--Sobic003G118200 Sobic002G419800 Sobic002G419800 Sobic001G050200--Sobic002G419800 Sobic001G050200--Sobic003G422500 Sobic001G050200--Sobic009G027300 Sobic003G247300 Sobic003G247300 Sobic001G050200--Sobic003G247300 Sobic009G191000 Sobic009G191000 Sobic001G050200--Sobic009G191000 Sobic007G075400 Sobic007G075400 Sobic001G050200--Sobic007G075400 Sobic004G269200 Sobic004G269200 Sobic001G050200--Sobic004G269200 Sobic004G331100 Sobic004G331100 Sobic001G050200--Sobic004G331100 Sobic003G101400 Sobic003G101400 Sobic001G050200--Sobic003G101400 Sobic005G100700--Sobic003G360400 Sobic002G344000 Sobic002G344000 Sobic005G100700--Sobic002G344000 Sobic007G159900 Sobic007G159900 Sobic005G100700--Sobic007G159900 Sobic003G389200 Sobic003G389200 Sobic005G100700--Sobic003G389200 Sobic008G113100 Sobic008G113100 Sobic005G100700--Sobic008G113100 Sobic007G146100 Sobic007G146100 Sobic005G100700--Sobic007G146100 Sobic006G096900 Sobic006G096900 Sobic005G100700--Sobic006G096900 Sobic001G456300 Sobic001G456300 Sobic005G100700--Sobic001G456300 Sobic010G112100 Sobic010G112100 Sobic005G100700--Sobic010G112100 Sobic003G372500--Sobic007G075400 Sobic003G372500--Sobic010G147100 Sobic003G372500--Sobic003G316500 Sobic003G372500--Sobic001G050200 Sobic003G372500--Sobic009G191000 Sobic010G227100 Sobic010G227100 Sobic003G372500--Sobic010G227100 Sobic003G372500--Sobic001G534700 Sobic003G372500--Sobic003G313500 Sobic003G372500--Sobic001G390800 Sobic001G122832 Sobic001G122832 Sobic003G221900--Sobic001G122832 Sobic003G221900--Sobic003G316500 Sobic003G340600 Sobic003G340600 Sobic003G221900--Sobic003G340600 Sobic003G221900--Sobic001G389100 Sobic010G021500 Sobic010G021500 Sobic003G221900--Sobic010G021500 Sobic006G133900 Sobic006G133900 Sobic003G221900--Sobic006G133900 Sobic003G221900--Sobic010G147100 Sobic001G332500 Sobic001G332500 Sobic003G221900--Sobic001G332500 Sobic003G029700 Sobic003G029700 Sobic003G221900--Sobic003G029700 Sobic004G200200--Sobic002G045600 Sobic001G146800 Sobic001G146800 Sobic004G200200--Sobic001G146800 Sobic003G139900 Sobic003G139900 Sobic004G200200--Sobic003G139900 Sobic004G200200--Sobic003G408600 Sobic002G008900 Sobic002G008900 Sobic004G200200--Sobic002G008900 Sobic004G200200--Sobic009G191000 Sobic001G058700 Sobic001G058700 Sobic004G200200--Sobic001G058700 Sobic001G289800 Sobic001G289800 Sobic004G200200--Sobic001G289800 Sobic004G200200--Sobic003G422500
Octagon: transcription factors


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