Gene annotation
Transcriptome id Sobic.003G435200.2,Sobic.003G435200.1
Synonym Sb03g046610
Functional annotation serine/threonine-protein kinase RIO-like, putative, expressed
UniProt C5XIM2 , A0A1B6Q8C2
Pfam PF01636 PF09202
Panther DB PTHR10593 PTHR10593:SF36
NCBI CDD -
KEGG Orthology K07179; RIO kinase 2
Gene Ontology GO:0006468; protein phosphorylation GO:0005524ATP binding GO:0004674protein serine/threonine kinase activity


Orthologs (automatic annotation)
TAIR AT3G51270 : protein serine/threonine kinases;ATP binding;catalytics
RAP-DB (Rice) LOC_Os01g66520.1 : serine/threonine-protein kinase RIO-like, putative, expressed
MaizeGDB (Corn) Zm00025a039478 , Zm00025a039929 , Zm00025a026499
Brachypodium PNT73345 , KQK10959
Barley HORVU3Hr1G090460.10 , HORVU3Hr1G090460.11 , HORVU3Hr1G090460.12 , HORVU3Hr1G090460.13 , HORVU3Hr1G090460.14 , HORVU3Hr1G090460.15 , HORVU3Hr1G090460.16 , HORVU3Hr1G090460.17 , HORVU3Hr1G090460.18 , HORVU3Hr1G090460.19 , HORVU3Hr1G090460.2 , HORVU3Hr1G090460.3 , HORVU3Hr1G090460.1 , HORVU3Hr1G090460.6 , HORVU3Hr1G090460.7 , HORVU3Hr1G090460.4 , HORVU3Hr1G090460.5 , HORVU3Hr1G090460.8 , HORVU3Hr1G090460.9 , HORVU3Hr1G090460.24 , HORVU3Hr1G090460.21 , HORVU3Hr1G090460.20 , HORVU3Hr1G090460.23 , HORVU3Hr1G090460.22
Wheat TraesCS3D02G398000 , TraesCS3A02G403100
Populus -


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cDNA sequences
Sobic.003G435200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G211800 AT-rich interaction region, putative, expressed -
2 Sobic.008G087866 - -
3 Sobic.010G143800 expressed protein -
4 Sobic.005G027400 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
5 Sobic.009G165700 SAC3/GANP family protein, putative, expressed -
6 Sobic.003G188400 glutamate dehydrogenase protein, putative, expressed K00262: E1.4.1.4, glutamate dehydrogenase (NADP+)
7 Sobic.003G139900 "Highest expression level in embryo, up-regulation in roots in response to exogenous ABA and PEG"(PubMedID : 27501690)@OsSPL1 - SBP-box gene family member, expressed -
8 Sobic.001G441400 transcription factor, putative, expressed K09060: plant G-box-binding factor
9 Sobic.001G261501 - -
10 Sobic.004G320500 expressed protein K14794: ribosomal RNA-processing protein 12
11 Sobic.003G362600 AT hook motif family protein, expressed K15200: general transcription factor 3C polypeptide 2
12 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
13 Sobic.006G055200 RNA-binding motif protein, putative, expressed K13192: RNA-binding protein 26
14 Sobic.006G185100 ranBP1 domain containing protein, expressed K14295: NUP50, nuclear pore complex protein Nup50
15 Sobic.010G151900 ribonuclease P family protein, putative, expressed K03538: POP4, ribonuclease P protein subunit POP4
16 Sobic.009G158100 calcium-binding mitochondrial protein anon-60Da, putative, expressed K17800: LETM1, LETM1 and EF-hand domain-containing protein 1, mitochondrial
17 Sobic.003G252100 DDT, putative, expressed -
18 Sobic.005G116200 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed K10765: alkylated DNA repair protein alkB homolog 1
19 Sobic.001G111850 - -
20 Sobic.009G056200 arginyl-tRNA synthetase, putative, expressed K01887: RARS, arginyl-tRNA synthetase


Gene co-expression network
sample Sobic003G435200 Sobic003G435200 Sobic002G211800 Sobic002G211800 Sobic003G435200--Sobic002G211800 Sobic008G087866 Sobic008G087866 Sobic003G435200--Sobic008G087866 Sobic010G143800 Sobic010G143800 Sobic003G435200--Sobic010G143800 Sobic005G027400 Sobic005G027400 Sobic003G435200--Sobic005G027400 Sobic009G165700 Sobic009G165700 Sobic003G435200--Sobic009G165700 Sobic003G188400 Sobic003G188400 Sobic003G435200--Sobic003G188400 Sobic003G139900 Sobic003G139900 Sobic003G435200--Sobic003G139900 Sobic001G441400 Sobic001G441400 Sobic003G435200--Sobic001G441400 Sobic001G261501 Sobic001G261501 Sobic003G435200--Sobic001G261501 Sobic002G211800--Sobic009G165700 Sobic007G031900 Sobic007G031900 Sobic002G211800--Sobic007G031900 Sobic002G344000 Sobic002G344000 Sobic002G211800--Sobic002G344000 Sobic003G166750 Sobic003G166750 Sobic002G211800--Sobic003G166750 Sobic004G023000 Sobic004G023000 Sobic002G211800--Sobic004G023000 Sobic009G132700 Sobic009G132700 Sobic002G211800--Sobic009G132700 Sobic003G170900 Sobic003G170900 Sobic002G211800--Sobic003G170900 Sobic002G294800 Sobic002G294800 Sobic002G211800--Sobic002G294800 Sobic003G362600 Sobic003G362600 Sobic002G211800--Sobic003G362600 Sobic008G087866--Sobic009G165700 Sobic003G422500 Sobic003G422500 Sobic008G087866--Sobic003G422500 Sobic008G001200 Sobic008G001200 Sobic008G087866--Sobic008G001200 Sobic001G117200 Sobic001G117200 Sobic008G087866--Sobic001G117200 Sobic008G087866--Sobic003G166750 Sobic005G001000 Sobic005G001000 Sobic008G087866--Sobic005G001000 Sobic008G087866--Sobic003G170900 Sobic001G194200 Sobic001G194200 Sobic008G087866--Sobic001G194200 Sobic001G370900 Sobic001G370900 Sobic008G087866--Sobic001G370900 Sobic010G143800--Sobic005G027400 Sobic001G081200 Sobic001G081200 Sobic010G143800--Sobic001G081200 Sobic007G161000 Sobic007G161000 Sobic010G143800--Sobic007G161000 Sobic004G006900 Sobic004G006900 Sobic010G143800--Sobic004G006900 Sobic001G529600 Sobic001G529600 Sobic010G143800--Sobic001G529600 Sobic001G365900 Sobic001G365900 Sobic010G143800--Sobic001G365900 Sobic010G143800--Sobic002G294800 Sobic010G021500 Sobic010G021500 Sobic010G143800--Sobic010G021500 Sobic003G398700 Sobic003G398700 Sobic010G143800--Sobic003G398700 Sobic002G309600 Sobic002G309600 Sobic005G027400--Sobic002G309600 Sobic004G065100 Sobic004G065100 Sobic005G027400--Sobic004G065100 Sobic001G451400 Sobic001G451400 Sobic005G027400--Sobic001G451400 Sobic005G027400--Sobic009G132700 Sobic007G117400 Sobic007G117400 Sobic005G027400--Sobic007G117400 Sobic001G219600 Sobic001G219600 Sobic005G027400--Sobic001G219600 Sobic001G289800 Sobic001G289800 Sobic005G027400--Sobic001G289800 Sobic008G047800 Sobic008G047800 Sobic005G027400--Sobic008G047800 Sobic005G027400--Sobic004G006900 Sobic009G165700--Sobic003G422500 Sobic010G247800 Sobic010G247800 Sobic009G165700--Sobic010G247800 Sobic010G206900 Sobic010G206900 Sobic009G165700--Sobic010G206900 Sobic009G165700--Sobic003G166750 Sobic009G165700--Sobic008G087866 Sobic009G165700--Sobic001G451400 Sobic009G165700--Sobic003G170900 Sobic001G534700 Sobic001G534700 Sobic009G165700--Sobic001G534700 Sobic009G165700--Sobic008G001200 Sobic001G433800 Sobic001G433800 Sobic003G188400--Sobic001G433800 Sobic001G063700 Sobic001G063700 Sobic003G188400--Sobic001G063700 Sobic003G360400 Sobic003G360400 Sobic003G188400--Sobic003G360400 Sobic002G133300 Sobic002G133300 Sobic003G188400--Sobic002G133300 Sobic003G095900 Sobic003G095900 Sobic003G188400--Sobic003G095900 Sobic002G317200 Sobic002G317200 Sobic003G188400--Sobic002G317200 Sobic007G159900 Sobic007G159900 Sobic003G188400--Sobic007G159900 Sobic010G112100 Sobic010G112100 Sobic003G188400--Sobic010G112100 Sobic001G311500 Sobic001G311500 Sobic003G188400--Sobic001G311500 Sobic004G200200 Sobic004G200200 Sobic003G139900--Sobic004G200200 Sobic003G139900--Sobic005G027400 Sobic007G193700 Sobic007G193700 Sobic003G139900--Sobic007G193700 Sobic002G134200 Sobic002G134200 Sobic003G139900--Sobic002G134200 Sobic009G191000 Sobic009G191000 Sobic003G139900--Sobic009G191000 Sobic001G260400 Sobic001G260400 Sobic003G139900--Sobic001G260400 Sobic003G313500 Sobic003G313500 Sobic003G139900--Sobic003G313500 Sobic003G139900--Sobic010G143800 Sobic004G263600 Sobic004G263600 Sobic003G139900--Sobic004G263600 Sobic001G441400--Sobic001G451400 Sobic003G404500 Sobic003G404500 Sobic001G441400--Sobic003G404500 Sobic006G252900 Sobic006G252900 Sobic001G441400--Sobic006G252900 Sobic001G441400--Sobic005G027400 Sobic001G441400--Sobic009G165700 Sobic001G363500 Sobic001G363500 Sobic001G441400--Sobic001G363500 Sobic003G102400 Sobic003G102400 Sobic001G441400--Sobic003G102400 Sobic002G299700 Sobic002G299700 Sobic001G441400--Sobic002G299700 Sobic004G351100 Sobic004G351100 Sobic001G441400--Sobic004G351100 Sobic009G053900 Sobic009G053900 Sobic001G261501--Sobic009G053900 Sobic002G380200 Sobic002G380200 Sobic001G261501--Sobic002G380200 Sobic001G261501--Sobic009G165700 Sobic003G408600 Sobic003G408600 Sobic001G261501--Sobic003G408600 Sobic001G261501--Sobic005G027400 Sobic001G540400 Sobic001G540400 Sobic001G261501--Sobic001G540400 Sobic007G157000 Sobic007G157000 Sobic001G261501--Sobic007G157000 Sobic001G261501--Sobic003G422500 Sobic007G063000 Sobic007G063000 Sobic001G261501--Sobic007G063000
Octagon: transcription factors


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