Gene annotation
Transcriptome id Sobic.009G137800.3,Sobic.009G137800.1,Sobic.009G137800.2
Synonym Sb09g020380
Functional annotation expressed protein
UniProt C5YXU1 , A0A1B6P8R0
Pfam PF08711
Panther DB PTHR15141 PTHR15141:SF40
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006351; transcription, DNA-templated GO:0005634nucleus GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G05140 : Transcription elongation factor (TFIIS) family protein
RAP-DB (Rice) LOC_Os05g34210.1 : expressed protein
MaizeGDB (Corn) Zm00025a037429
Brachypodium KQK06255
Barley -
Wheat TraesCS1D02G259000
Populus -


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cDNA sequences
Sobic.009G137800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G153600 exo70 exocyst complex subunit domain containing protein, expressed K07195: EXOC7, exocyst complex component 7
2 Sobic.008G189400 NBS-LRR disease resistance protein, putative, expressed -
3 Sobic.004G267300 bg55, putative, expressed -
4 Sobic.003G185200 chaperone protein dnaJ 49, putative, expressed K09518: DnaJ homolog subfamily B member 12
5 Sobic.008G025900 expressed protein -
6 Sobic.001G424700 CAMK_CAMK_like_ULKh_APGy.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08269: ULK2, serine/threonine-protein kinase ULK2
7 Sobic.009G087800 seven in absentia protein family domain containing protein, expressed K08742: E3 ubiquitin-protein ligase SIAH2
8 Sobic.001G022100 expressed protein -
9 Sobic.010G260500 pre-mRNA-splicing factor syf2, putative, expressed K12868: pre-mRNA-splicing factor SYF2
10 Sobic.003G333600 OsFBX29 - F-box domain containing protein, expressed -
11 Sobic.001G290200 leucine rich repeat containing protein, expressed -
12 Sobic.003G261300 arginine/serine-rich coiled-coil protein 1, putative, expressed -
13 Sobic.002G365100 RNA recognition motif containing protein, putative, expressed -
14 Sobic.010G026400 BUD13, putative, expressed K13106: BUD13, pre-mRNA-splicing factor CWC26
15 Sobic.003G012500 expressed protein -
16 Sobic.003G081100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@OsWAK2 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed -
17 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit
18 Sobic.005G046100 bZIP transcription factor domain containing protein, expressed -
19 Sobic.006G273200 "PKc_like super family, protein kjinases, catalytic domain"(PubMedID : 29491869)@protein kinase family protein, putative, expressed K14500: BR-signaling kinase
20 Sobic.005G149500 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase


Gene co-expression network
sample Sobic009G137800 Sobic009G137800 Sobic004G153600 Sobic004G153600 Sobic009G137800--Sobic004G153600 Sobic008G189400 Sobic008G189400 Sobic009G137800--Sobic008G189400 Sobic004G267300 Sobic004G267300 Sobic009G137800--Sobic004G267300 Sobic003G185200 Sobic003G185200 Sobic009G137800--Sobic003G185200 Sobic008G025900 Sobic008G025900 Sobic009G137800--Sobic008G025900 Sobic001G424700 Sobic001G424700 Sobic009G137800--Sobic001G424700 Sobic009G087800 Sobic009G087800 Sobic009G137800--Sobic009G087800 Sobic001G022100 Sobic001G022100 Sobic009G137800--Sobic001G022100 Sobic010G260500 Sobic010G260500 Sobic009G137800--Sobic010G260500 Sobic004G153600--Sobic001G424700 Sobic003G081100 Sobic003G081100 Sobic004G153600--Sobic003G081100 Sobic003G333600 Sobic003G333600 Sobic004G153600--Sobic003G333600 Sobic004G153600--Sobic009G137800 Sobic004G153600--Sobic010G260500 Sobic007G078000 Sobic007G078000 Sobic004G153600--Sobic007G078000 Sobic003G324000 Sobic003G324000 Sobic004G153600--Sobic003G324000 Sobic002G284200 Sobic002G284200 Sobic004G153600--Sobic002G284200 Sobic008G094700 Sobic008G094700 Sobic004G153600--Sobic008G094700 Sobic003G119800 Sobic003G119800 Sobic008G189400--Sobic003G119800 Sobic008G189400--Sobic009G137800 Sobic010G056000 Sobic010G056000 Sobic008G189400--Sobic010G056000 Sobic006G273200 Sobic006G273200 Sobic008G189400--Sobic006G273200 Sobic001G351700 Sobic001G351700 Sobic008G189400--Sobic001G351700 Sobic002G365100 Sobic002G365100 Sobic008G189400--Sobic002G365100 Sobic007G145200 Sobic007G145200 Sobic008G189400--Sobic007G145200 Sobic009G195300 Sobic009G195300 Sobic008G189400--Sobic009G195300 Sobic008G189400--Sobic008G025900 Sobic004G267300--Sobic009G137800 Sobic007G134600 Sobic007G134600 Sobic004G267300--Sobic007G134600 Sobic004G267300--Sobic008G025900 Sobic003G056100 Sobic003G056100 Sobic004G267300--Sobic003G056100 Sobic004G267300--Sobic001G351700 Sobic009G172400 Sobic009G172400 Sobic004G267300--Sobic009G172400 Sobic002G324200 Sobic002G324200 Sobic004G267300--Sobic002G324200 Sobic004G267300--Sobic010G056000 Sobic004G132150 Sobic004G132150 Sobic004G267300--Sobic004G132150 Sobic003G185200--Sobic002G365100 Sobic010G174800 Sobic010G174800 Sobic003G185200--Sobic010G174800 Sobic003G248500 Sobic003G248500 Sobic003G185200--Sobic003G248500 Sobic010G202600 Sobic010G202600 Sobic003G185200--Sobic010G202600 Sobic003G261300 Sobic003G261300 Sobic003G185200--Sobic003G261300 Sobic010G000700 Sobic010G000700 Sobic003G185200--Sobic010G000700 Sobic006G128800 Sobic006G128800 Sobic003G185200--Sobic006G128800 Sobic004G263900 Sobic004G263900 Sobic003G185200--Sobic004G263900 Sobic003G336800 Sobic003G336800 Sobic003G185200--Sobic003G336800 Sobic002G224450 Sobic002G224450 Sobic008G025900--Sobic002G224450 Sobic005G139800 Sobic005G139800 Sobic008G025900--Sobic005G139800 Sobic004G121000 Sobic004G121000 Sobic008G025900--Sobic004G121000 Sobic005G221425 Sobic005G221425 Sobic008G025900--Sobic005G221425 Sobic009G209800 Sobic009G209800 Sobic008G025900--Sobic009G209800 Sobic001G240400 Sobic001G240400 Sobic008G025900--Sobic001G240400 Sobic009G157500 Sobic009G157500 Sobic008G025900--Sobic009G157500 Sobic005G110427 Sobic005G110427 Sobic008G025900--Sobic005G110427 Sobic008G049701 Sobic008G049701 Sobic008G025900--Sobic008G049701 Sobic001G424700--Sobic007G078000 Sobic001G424700--Sobic003G333600 Sobic005G149500 Sobic005G149500 Sobic001G424700--Sobic005G149500 Sobic004G196700 Sobic004G196700 Sobic001G424700--Sobic004G196700 Sobic003G093600 Sobic003G093600 Sobic001G424700--Sobic003G093600 Sobic001G424700--Sobic009G087800 Sobic001G424700--Sobic010G260500 Sobic007G205800 Sobic007G205800 Sobic001G424700--Sobic007G205800 Sobic004G205600 Sobic004G205600 Sobic001G424700--Sobic004G205600 Sobic009G087800--Sobic007G205800 Sobic003G258400 Sobic003G258400 Sobic009G087800--Sobic003G258400 Sobic007G011400 Sobic007G011400 Sobic009G087800--Sobic007G011400 Sobic009G087800--Sobic003G093600 Sobic004G271900 Sobic004G271900 Sobic009G087800--Sobic004G271900 Sobic010G263800 Sobic010G263800 Sobic009G087800--Sobic010G263800 Sobic010G026400 Sobic010G026400 Sobic009G087800--Sobic010G026400 Sobic009G087800--Sobic001G424700 Sobic009G198900 Sobic009G198900 Sobic009G087800--Sobic009G198900 Sobic001G022100--Sobic008G025900 Sobic001G022100--Sobic009G137800 Sobic005G096800 Sobic005G096800 Sobic001G022100--Sobic005G096800 Sobic002G400900 Sobic002G400900 Sobic001G022100--Sobic002G400900 Sobic001G022100--Sobic005G139800 Sobic001G022100--Sobic005G221425 Sobic001G022100--Sobic002G224450 Sobic002G166600 Sobic002G166600 Sobic001G022100--Sobic002G166600 Sobic001G022100--Sobic003G185200 Sobic002G157300 Sobic002G157300 Sobic010G260500--Sobic002G157300 Sobic008G174300 Sobic008G174300 Sobic010G260500--Sobic008G174300 Sobic010G260500--Sobic007G078000 Sobic007G185900 Sobic007G185900 Sobic010G260500--Sobic007G185900 Sobic010G033400 Sobic010G033400 Sobic010G260500--Sobic010G033400 Sobic001G451000 Sobic001G451000 Sobic010G260500--Sobic001G451000 Sobic010G260500--Sobic004G263900 Sobic010G260500--Sobic005G149500 Sobic003G187400 Sobic003G187400 Sobic010G260500--Sobic003G187400
Octagon: transcription factors


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