Gene annotation
Transcriptome id Sobic.007G223300.1
Synonym Sb07g028860, BIM1
Functional annotation transcription factor BIM2, putative, expressed
UniProt C5YJN2
Pfam PF00010
Panther DB PTHR12565 PTHR12565:SF96
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G08130 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os08g38210.1 : transcription factor BIM2, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQJ98718 , KQJ98763 , KQJ98764 , KQJ98765 , KQJ90635
Barley HORVU5Hr1G070800.23 , HORVU5Hr1G070800.21 , HORVU5Hr1G070800.20 , HORVU5Hr1G070800.27 , HORVU5Hr1G070800.26 , HORVU5Hr1G070800.25 , HORVU5Hr1G070800.24 , HORVU5Hr1G070800.16 , HORVU5Hr1G070800.17 , HORVU5Hr1G070800.1 , HORVU5Hr1G070800.2 , HORVU5Hr1G070800.3 , HORVU5Hr1G070800.4 , HORVU5Hr1G070800.5 , HORVU5Hr1G070800.6 , HORVU5Hr1G070800.7 , HORVU5Hr1G070800.8 , HORVU5Hr1G070800.9 , HORVU5Hr1G070800.18 , HORVU5Hr1G070800.19 , HORVU5Hr1G070800.12 , HORVU5Hr1G070800.13 , HORVU5Hr1G070800.10 , HORVU5Hr1G070800.11 , HORVU5Hr1G070800.14 , HORVU5Hr1G070800.15
Wheat TraesCS5A02G251390 , TraesCS5A02G251390 , TraesCS5A02G251390 , TraesCS5A02G251390
Populus -


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cDNA sequences
Sobic.007G223300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G285600 ethylene-responsive protein related, putative, expressed -
2 Sobic.003G319000 universal stress protein domain containing protein, putative, expressed -
3 Sobic.010G017000 RNA recognition motif containing protein, putative, expressed -
4 Sobic.006G222400 RNA recognition motif containing protein, putative, expressed -
5 Sobic.004G222600 expressed protein -
6 Sobic.009G195900 OsFBT9 - F-box and tubby domain containing protein, expressed -
7 Sobic.002G236200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@transcription factor BIM2, putative, expressed -
8 Sobic.001G237500 transporter family protein, putative, expressed -
9 Sobic.003G329800 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
10 Sobic.002G272900 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
11 Sobic.007G188100 Candidate orthologue to the wheat Pm40 gene(PubMedID : 27755575)@protein kinase domain containing protein, expressed K13429: chitin elicitor receptor kinase 1
12 Sobic.001G464900 "Ca ATPase, IIB type"(PubMedID : 22196357)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
13 Sobic.001G230900 - K07910: Ras-related protein Rab-18
14 Sobic.004G297300 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05609: UCHL3, ubiquitin carboxyl-terminal hydrolase L3
15 Sobic.003G217100 Yip1 domain containing protein, expressed -
16 Sobic.010G238700 dynamin family protein, putative, expressed K12483: EH domain-containing protein 1
17 Sobic.003G036000 NADP-ME(PubMedID : 19549309)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NADP-malic enzyme(PubMedID : 26904072)@-(PubMedID : 26976818)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
18 Sobic.004G220400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Lyase(PubMedID : 30367619)@phenylalanine ammonia-lyase, putative, expressed K10775: phenylalanine ammonia-lyase
19 Sobic.001G105100 neighbor of COX4, putative, expressed -
20 Sobic.006G127000 Divergent PAP2 family domain containing protein, expressed K09775: uncharacterized protein


Gene co-expression network
sample Sobic007G223300 Sobic007G223300 Sobic004G285600 Sobic004G285600 Sobic007G223300--Sobic004G285600 Sobic003G319000 Sobic003G319000 Sobic007G223300--Sobic003G319000 Sobic010G017000 Sobic010G017000 Sobic007G223300--Sobic010G017000 Sobic006G222400 Sobic006G222400 Sobic007G223300--Sobic006G222400 Sobic004G222600 Sobic004G222600 Sobic007G223300--Sobic004G222600 Sobic009G195900 Sobic009G195900 Sobic007G223300--Sobic009G195900 Sobic002G236200 Sobic002G236200 Sobic007G223300--Sobic002G236200 Sobic001G237500 Sobic001G237500 Sobic007G223300--Sobic001G237500 Sobic003G329800 Sobic003G329800 Sobic007G223300--Sobic003G329800 Sobic001G532200 Sobic001G532200 Sobic004G285600--Sobic001G532200 Sobic009G027900 Sobic009G027900 Sobic004G285600--Sobic009G027900 Sobic009G248500 Sobic009G248500 Sobic004G285600--Sobic009G248500 Sobic004G212300 Sobic004G212300 Sobic004G285600--Sobic004G212300 Sobic010G052200 Sobic010G052200 Sobic004G285600--Sobic010G052200 Sobic001G464900 Sobic001G464900 Sobic004G285600--Sobic001G464900 Sobic001G173300 Sobic001G173300 Sobic004G285600--Sobic001G173300 Sobic001G084100 Sobic001G084100 Sobic004G285600--Sobic001G084100 Sobic001G516600 Sobic001G516600 Sobic004G285600--Sobic001G516600 Sobic001G196100 Sobic001G196100 Sobic003G319000--Sobic001G196100 Sobic003G092700 Sobic003G092700 Sobic003G319000--Sobic003G092700 Sobic009G182200 Sobic009G182200 Sobic003G319000--Sobic009G182200 Sobic001G026600 Sobic001G026600 Sobic003G319000--Sobic001G026600 Sobic003G252900 Sobic003G252900 Sobic003G319000--Sobic003G252900 Sobic003G312400 Sobic003G312400 Sobic003G319000--Sobic003G312400 Sobic001G418000 Sobic001G418000 Sobic003G319000--Sobic001G418000 Sobic003G410400 Sobic003G410400 Sobic003G319000--Sobic003G410400 Sobic003G023500 Sobic003G023500 Sobic003G319000--Sobic003G023500 Sobic010G017000--Sobic006G222400 Sobic006G217700 Sobic006G217700 Sobic010G017000--Sobic006G217700 Sobic003G021200 Sobic003G021200 Sobic010G017000--Sobic003G021200 Sobic003G052400 Sobic003G052400 Sobic010G017000--Sobic003G052400 Sobic009G160200 Sobic009G160200 Sobic010G017000--Sobic009G160200 Sobic003G038600 Sobic003G038600 Sobic010G017000--Sobic003G038600 Sobic007G059900 Sobic007G059900 Sobic010G017000--Sobic007G059900 Sobic001G283500 Sobic001G283500 Sobic010G017000--Sobic001G283500 Sobic009G008600 Sobic009G008600 Sobic010G017000--Sobic009G008600 Sobic010G238700 Sobic010G238700 Sobic006G222400--Sobic010G238700 Sobic001G126200 Sobic001G126200 Sobic006G222400--Sobic001G126200 Sobic003G217100 Sobic003G217100 Sobic006G222400--Sobic003G217100 Sobic008G132800 Sobic008G132800 Sobic006G222400--Sobic008G132800 Sobic008G137600 Sobic008G137600 Sobic006G222400--Sobic008G137600 Sobic002G428200 Sobic002G428200 Sobic006G222400--Sobic002G428200 Sobic001G105100 Sobic001G105100 Sobic006G222400--Sobic001G105100 Sobic004G224800 Sobic004G224800 Sobic006G222400--Sobic004G224800 Sobic006G222400--Sobic010G017000 Sobic007G150000 Sobic007G150000 Sobic004G222600--Sobic007G150000 Sobic004G222600--Sobic003G023500 Sobic004G222600--Sobic003G217100 Sobic004G222600--Sobic001G237500 Sobic001G309500 Sobic001G309500 Sobic004G222600--Sobic001G309500 Sobic002G296300 Sobic002G296300 Sobic004G222600--Sobic002G296300 Sobic002G090700 Sobic002G090700 Sobic004G222600--Sobic002G090700 Sobic003G332401 Sobic003G332401 Sobic004G222600--Sobic003G332401 Sobic007G115100 Sobic007G115100 Sobic004G222600--Sobic007G115100 Sobic008G188700 Sobic008G188700 Sobic009G195900--Sobic008G188700 Sobic008G016900 Sobic008G016900 Sobic009G195900--Sobic008G016900 Sobic007G178200 Sobic007G178200 Sobic009G195900--Sobic007G178200 Sobic004G257300 Sobic004G257300 Sobic009G195900--Sobic004G257300 Sobic002G330300 Sobic002G330300 Sobic009G195900--Sobic002G330300 Sobic002G124700 Sobic002G124700 Sobic009G195900--Sobic002G124700 Sobic001G416600 Sobic001G416600 Sobic009G195900--Sobic001G416600 Sobic002G270700 Sobic002G270700 Sobic009G195900--Sobic002G270700 Sobic001G217000 Sobic001G217000 Sobic009G195900--Sobic001G217000 Sobic002G236200--Sobic010G238700 Sobic002G121000 Sobic002G121000 Sobic002G236200--Sobic002G121000 Sobic001G230900 Sobic001G230900 Sobic002G236200--Sobic001G230900 Sobic009G036900 Sobic009G036900 Sobic002G236200--Sobic009G036900 Sobic009G157900 Sobic009G157900 Sobic002G236200--Sobic009G157900 Sobic002G068300 Sobic002G068300 Sobic002G236200--Sobic002G068300 Sobic003G189700 Sobic003G189700 Sobic002G236200--Sobic003G189700 Sobic009G034400 Sobic009G034400 Sobic002G236200--Sobic009G034400 Sobic010G144400 Sobic010G144400 Sobic002G236200--Sobic010G144400 Sobic010G105600 Sobic010G105600 Sobic001G237500--Sobic010G105600 Sobic006G257001 Sobic006G257001 Sobic001G237500--Sobic006G257001 Sobic001G237500--Sobic001G105100 Sobic001G067900 Sobic001G067900 Sobic001G237500--Sobic001G067900 Sobic001G237500--Sobic003G217100 Sobic001G237500--Sobic004G222600 Sobic002G131900 Sobic002G131900 Sobic001G237500--Sobic002G131900 Sobic001G237500--Sobic003G052400 Sobic004G132300 Sobic004G132300 Sobic001G237500--Sobic004G132300 Sobic001G483100 Sobic001G483100 Sobic003G329800--Sobic001G483100 Sobic004G066800 Sobic004G066800 Sobic003G329800--Sobic004G066800 Sobic001G502200 Sobic001G502200 Sobic003G329800--Sobic001G502200 Sobic002G263800 Sobic002G263800 Sobic003G329800--Sobic002G263800 Sobic004G310300 Sobic004G310300 Sobic003G329800--Sobic004G310300 Sobic008G161800 Sobic008G161800 Sobic003G329800--Sobic008G161800 Sobic003G329800--Sobic008G132800 Sobic003G018600 Sobic003G018600 Sobic003G329800--Sobic003G018600 Sobic006G150600 Sobic006G150600 Sobic003G329800--Sobic006G150600
Octagon: transcription factors


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