Gene annotation
Transcriptome id Sobic.004G285600.1
Synonym Sb04g032150
Functional annotation ethylene-responsive protein related, putative, expressed
UniProt C5Y1A9
Pfam -
Panther DB PTHR16223 PTHR16223:SF48
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G31050 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os02g45010.1 : ethylene-responsive protein related, putative, expressed
MaizeGDB (Corn) Zm00025a056797 , Zm00025a021472
Brachypodium -
Barley HORVU6Hr1G064820.4 , HORVU6Hr1G064820.10 , HORVU6Hr1G064820.11 , HORVU6Hr1G064820.17 , HORVU6Hr1G064820.18 , HORVU6Hr1G064820.12 , HORVU6Hr1G064820.13 , HORVU6Hr1G064820.16 , HORVU6Hr1G064820.8 , HORVU6Hr1G064820.9 , HORVU6Hr1G064820.1 , HORVU6Hr1G064820.2 , HORVU6Hr1G064820.3 , HORVU6Hr1G064820.5 , HORVU6Hr1G064820.6 , HORVU6Hr1G064820.7 , HORVU6Hr1G064820.14 , HORVU6Hr1G064820.15
Wheat TraesCS6A02G254300 , TraesCS6B02G271200 , TraesCS6B02G271200 , TraesCS6B02G271200 , TraesCS6D02G235700 , TraesCS6D02G235700 , TraesCS6D02G235700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G532200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsRhmbd7 - Putative Rhomboid homologue, expressed -
2 Sobic.009G027900 TKL_IRAK_CR4L.4 - The CR4L subfamily has homology with Crinkly4, expressed -
3 Sobic.009G248500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@C4-dicarboxylate transporter/malic acid transport protein, expressed -
4 Sobic.004G212300 determined the crystal structures of SbHCT in its apo-form and ternary complex with shikimate and p-coumaroyl-CoA(PubMedID : 23624856)@"shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
5 Sobic.010G052200 "caffeoylCoA O-methyltransferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@S-adenosyl methionine (SAM)-dependent O-methyltransferase(PubMedID : 30289910)@enzyme involved in monolignol synthesis(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase(PubMedID : 27457122)@caffeoyl-CoA O-methyltransferase, putative, expressed K00588: caffeoyl-CoA O-methyltransferase
6 Sobic.001G464900 "Ca ATPase, IIB type"(PubMedID : 22196357)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
7 Sobic.001G173300 alpha-1,4-glucan-protein synthase, putative, expressed K13379: RGP, reversibly glycosylated polypeptide / UDP-arabinopyranose mutase
8 Sobic.001G084100 UDP-glucose 6-dehydrogenase 5(PubMedID : 26186930)@UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase
9 Sobic.001G516600 AMP-binding domain containing protein, expressed K10526: OPC-8:0 CoA ligase 1
10 Sobic.007G192300 peroxidase precursor, putative, expressed K00430: peroxidase
11 Sobic.002G210300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@hypro1, putative, expressed -
12 Sobic.007G223300 transcription factor BIM2, putative, expressed -
13 Sobic.003G296700 protein kinase domain containing protein, expressed -
14 Sobic.007G151100 12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
15 Sobic.002G272900 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
16 Sobic.001G513700 down-regulated TF in developmental senescence(PubMedID : 27586543)@BHLH transcription factor, putative, expressed -
17 Sobic.004G257300 GPI-anchored protein, putative, expressed -
18 Sobic.010G069900 cytochrome P450 72A1, putative, expressed K15639: CYP734A1, PHYB activation tagged suppressor 1
19 Sobic.003G095400 glycosyltransferase protein, putative, expressed -
20 Sobic.001G322200 hydrolase, alpha/beta fold family protein, putative, expressed -


Gene co-expression network
sample Sobic004G285600 Sobic004G285600 Sobic001G532200 Sobic001G532200 Sobic004G285600--Sobic001G532200 Sobic009G027900 Sobic009G027900 Sobic004G285600--Sobic009G027900 Sobic009G248500 Sobic009G248500 Sobic004G285600--Sobic009G248500 Sobic004G212300 Sobic004G212300 Sobic004G285600--Sobic004G212300 Sobic010G052200 Sobic010G052200 Sobic004G285600--Sobic010G052200 Sobic001G464900 Sobic001G464900 Sobic004G285600--Sobic001G464900 Sobic001G173300 Sobic001G173300 Sobic004G285600--Sobic001G173300 Sobic001G084100 Sobic001G084100 Sobic004G285600--Sobic001G084100 Sobic001G516600 Sobic001G516600 Sobic004G285600--Sobic001G516600 Sobic001G532200--Sobic001G516600 Sobic001G532200--Sobic001G084100 Sobic001G532200--Sobic004G212300 Sobic001G513700 Sobic001G513700 Sobic001G532200--Sobic001G513700 Sobic001G532200--Sobic009G248500 Sobic007G151100 Sobic007G151100 Sobic001G532200--Sobic007G151100 Sobic001G532200--Sobic010G052200 Sobic009G073300 Sobic009G073300 Sobic001G532200--Sobic009G073300 Sobic001G532200--Sobic009G027900 Sobic009G027900--Sobic009G248500 Sobic001G322200 Sobic001G322200 Sobic009G027900--Sobic001G322200 Sobic006G066200 Sobic006G066200 Sobic009G027900--Sobic006G066200 Sobic008G042900 Sobic008G042900 Sobic009G027900--Sobic008G042900 Sobic002G140300 Sobic002G140300 Sobic009G027900--Sobic002G140300 Sobic009G027900--Sobic001G532200 Sobic009G027900--Sobic001G464900 Sobic006G165100 Sobic006G165100 Sobic009G027900--Sobic006G165100 Sobic009G027900--Sobic001G516600 Sobic009G248500--Sobic001G322200 Sobic001G267600 Sobic001G267600 Sobic009G248500--Sobic001G267600 Sobic003G037800 Sobic003G037800 Sobic009G248500--Sobic003G037800 Sobic009G248500--Sobic009G027900 Sobic002G356101 Sobic002G356101 Sobic009G248500--Sobic002G356101 Sobic001G247300 Sobic001G247300 Sobic009G248500--Sobic001G247300 Sobic003G228900 Sobic003G228900 Sobic009G248500--Sobic003G228900 Sobic009G248500--Sobic006G066200 Sobic003G093000 Sobic003G093000 Sobic009G248500--Sobic003G093000 Sobic004G212300--Sobic010G052200 Sobic004G212300--Sobic001G532200 Sobic003G119500 Sobic003G119500 Sobic004G212300--Sobic003G119500 Sobic004G062500 Sobic004G062500 Sobic004G212300--Sobic004G062500 Sobic004G212300--Sobic001G084100 Sobic004G212300--Sobic001G516600 Sobic006G156000 Sobic006G156000 Sobic004G212300--Sobic006G156000 Sobic002G040600 Sobic002G040600 Sobic004G212300--Sobic002G040600 Sobic010G252500 Sobic010G252500 Sobic004G212300--Sobic010G252500 Sobic010G052200--Sobic004G212300 Sobic010G052200--Sobic001G084100 Sobic010G052200--Sobic001G532200 Sobic002G128800 Sobic002G128800 Sobic010G052200--Sobic002G128800 Sobic007G124301 Sobic007G124301 Sobic010G052200--Sobic007G124301 Sobic010G252401 Sobic010G252401 Sobic010G052200--Sobic010G252401 Sobic010G052200--Sobic003G037800 Sobic005G113300 Sobic005G113300 Sobic010G052200--Sobic005G113300 Sobic010G052200--Sobic006G156000 Sobic001G464900--Sobic009G248500 Sobic001G464900--Sobic001G322200 Sobic001G464900--Sobic009G027900 Sobic006G159600 Sobic006G159600 Sobic001G464900--Sobic006G159600 Sobic005G228900 Sobic005G228900 Sobic001G464900--Sobic005G228900 Sobic001G464900--Sobic001G173300 Sobic007G198100 Sobic007G198100 Sobic001G464900--Sobic007G198100 Sobic001G464900--Sobic002G356101 Sobic010G065900 Sobic010G065900 Sobic001G464900--Sobic010G065900 Sobic001G173300--Sobic001G516600 Sobic004G257300 Sobic004G257300 Sobic001G173300--Sobic004G257300 Sobic004G036600 Sobic004G036600 Sobic001G173300--Sobic004G036600 Sobic009G208800 Sobic009G208800 Sobic001G173300--Sobic009G208800 Sobic001G173300--Sobic001G084100 Sobic001G173300--Sobic010G065900 Sobic001G173300--Sobic007G151100 Sobic001G173300--Sobic009G027900 Sobic005G168100 Sobic005G168100 Sobic001G173300--Sobic005G168100 Sobic001G084100--Sobic001G532200 Sobic001G084100--Sobic001G173300 Sobic001G084100--Sobic006G156000 Sobic001G084100--Sobic010G052200 Sobic001G084100--Sobic005G168100 Sobic001G084100--Sobic004G212300 Sobic001G084100--Sobic003G119500 Sobic003G219800 Sobic003G219800 Sobic001G084100--Sobic003G219800 Sobic001G418100 Sobic001G418100 Sobic001G084100--Sobic001G418100 Sobic001G516600--Sobic001G173300 Sobic001G516600--Sobic007G151100 Sobic001G516600--Sobic003G037800 Sobic003G296700 Sobic003G296700 Sobic001G516600--Sobic003G296700 Sobic010G268400 Sobic010G268400 Sobic001G516600--Sobic010G268400 Sobic001G516600--Sobic001G532200 Sobic006G131400 Sobic006G131400 Sobic001G516600--Sobic006G131400 Sobic008G177800 Sobic008G177800 Sobic001G516600--Sobic008G177800 Sobic002G245100 Sobic002G245100 Sobic001G516600--Sobic002G245100
Octagon: transcription factors


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