Gene annotation
Transcriptome id Sobic.004G220400.1
Synonym PAL,Phenylalanine ammonia-lyase, Sb04g026520, ATPAL1, PAL1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
Lyase (PubMedID : 30367619)
phenylalanine ammonia-lyase, putative, expressed
UniProt Q41293 , C5XXT9
Pfam PF00221
Panther DB PTHR10362 PTHR10362:SF16
NCBI CDD -
KEGG Orthology K10775; phenylalanine ammonia-lyase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G37040 : PHE ammonia lyase 1
RAP-DB (Rice) LOC_Os02g41650.1 : phenylalanine ammonia-lyase, putative, expressed
MaizeGDB (Corn) Zm00025a021097 , Zm00025a021100 , Zm00025a021102 , Zm00025a021099 , Zm00025a032035 , Zm00025a032034 , Zm00025a032030 , Zm00025a007342 , Zm00025a010654 , Zm00025a010653
Brachypodium KQJ83619 , KQK00414 , KQK00065 , KQK00064 , KQK00416 , KQK00417 , KQK00357 , KQK00415
Barley HORVU2Hr1G089440.17 , HORVU2Hr1G089440.16 , HORVU2Hr1G089440.15 , HORVU2Hr1G089440.13 , HORVU2Hr1G089440.12 , HORVU2Hr1G089440.11 , HORVU2Hr1G089440.10 , HORVU6Hr1G058820.7 , HORVU6Hr1G058820.6 , HORVU6Hr1G058820.5 , HORVU6Hr1G058820.4 , HORVU6Hr1G058820.3 , HORVU6Hr1G058820.2 , HORVU6Hr1G058820.1 , HORVU6Hr1G058820.9 , HORVU6Hr1G058820.8 , HORVU0Hr1G016330.3 , HORVU0Hr1G016330.2 , HORVU0Hr1G016330.1 , HORVU0Hr1G016330.7 , HORVU0Hr1G016330.6 , HORVU0Hr1G016330.5 , HORVU0Hr1G016330.4 , HORVU0Hr1G016330.9 , HORVU0Hr1G016330.8 , HORVU2Hr1G089540.1 , HORVU1Hr1G022060.1 , HORVU1Hr1G022060.2 , HORVU2Hr1G038120.4 , HORVU2Hr1G038120.5 , HORVU2Hr1G038120.6 , HORVU2Hr1G038120.1 , HORVU2Hr1G038120.2 , HORVU2Hr1G038120.3 , HORVU0Hr1G016330.10 , HORVU2Hr1G089440.9 , HORVU2Hr1G089440.8 , HORVU2Hr1G089440.6 , HORVU2Hr1G089440.4 , HORVU2Hr1G089440.3 , HORVU2Hr1G089440.2 , HORVU2Hr1G089440.1 , HORVU6Hr1G058820.12 , HORVU6Hr1G058820.11 , HORVU6Hr1G058820.10 , HORVU6Hr1G058840.1 , HORVU6Hr1G058840.2
Wheat TraesCS1D02G039400 , TraesCS3B02G053900 , TraesCS3D02G016500 , TraesCS5B02G468400 , TraesCS2D02G377200 , TraesCS6A02G222900 , TraesCS1B02G048300 , TraesCS2B02G398200 , TraesCS6D02G212200 , TraesCS2B02G398000 , TraesCS1D02G039500 , TraesCS5B02G468300 , TraesCS2D02G377600 , TraesCS4A02G401300 , TraesCS2A02G381000 , TraesCS2A02G381100 , TraesCS2A02G380800 , TraesCS2B02G398400 , TraesCS2A02G380900 , TraesCS1B02G048200 , TraesCS2D02G377400 , TraesCS6D02G212200 , TraesCS1A02G037700 , TraesCS2B02G398100 , TraesCS2B02G398300 , TraesCS2B02G398300 , TraesCS2B02G398000 , TraesCS6D02G212400 , TraesCS6D02G212400 , TraesCS6D02G212400 , TraesCS3D02G016300 , TraesCS6B02G258400 , TraesCS6B02G258400 , TraesCS6B02G258400 , TraesCS1B02G048100 , TraesCS1B02G048100 , TraesCS1A02G037800 , TraesCS6A02G222800 , TraesCS6B02G258500 , TraesCS6B02G258500
Populus -


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cDNA sequences
Sobic.004G220400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G238800 glycosyltransferase family 43 protein, putative, expressed -
2 Sobic.002G320800 expressed protein -
3 Sobic.004G062500 "4-coumaroyl-CoA synthetase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Brown midrib2 (Bmr2) encodes the major 4-coumarate:coenzyme A ligase involved in lignin biosynthesis(PubMedID : 22313236)@4-Coumarate: Coenzyme A Ligase (4CL)(PubMedID : 22313236)@AMP-binding domain containing protein, expressed K01904: 4-coumarate--CoA ligase
4 Sobic.001G282100 peptide transporter PTR2, putative, expressed -
5 Sobic.007G186100 protein kinase, putative, expressed K13436: pto-interacting protein 1
6 Sobic.003G343900 expressed protein -
7 Sobic.004G212300 determined the crystal structures of SbHCT in its apo-form and ternary complex with shikimate and p-coumaroyl-CoA(PubMedID : 23624856)@"shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
8 Sobic.001G294000 LOL3, putative, expressed -
9 Sobic.006G156000 ferredoxin-thioredoxin reductase, variable chain, putative, expressed -
10 Sobic.003G443300 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
11 Sobic.003G344600 BAG domain containing protein, expressed -
12 Sobic.009G220100 exostosin family domain containing protein, expressed -
13 Sobic.004G262200 DNA binding protein, putative, expressed -
14 Sobic.003G290000 6-phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
15 Sobic.003G305700 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
16 Sobic.008G103700 nitrilase-associated protein, putative, expressed K18635: protein SPIRAL1 and related proteins
17 Sobic.003G108200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.003G329800 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
19 Sobic.001G483100 peptidase, T1 family, putative, expressed K02730: 20S proteasome subunit alpha 1
20 Sobic.009G026200 IQ calmodulin-binding motif domain containing protein, expressed -


Gene co-expression network
sample Sobic004G220400 Sobic004G220400 Sobic010G238800 Sobic010G238800 Sobic004G220400--Sobic010G238800 Sobic002G320800 Sobic002G320800 Sobic004G220400--Sobic002G320800 Sobic004G062500 Sobic004G062500 Sobic004G220400--Sobic004G062500 Sobic001G282100 Sobic001G282100 Sobic004G220400--Sobic001G282100 Sobic007G186100 Sobic007G186100 Sobic004G220400--Sobic007G186100 Sobic003G343900 Sobic003G343900 Sobic004G220400--Sobic003G343900 Sobic004G212300 Sobic004G212300 Sobic004G220400--Sobic004G212300 Sobic001G294000 Sobic001G294000 Sobic004G220400--Sobic001G294000 Sobic006G156000 Sobic006G156000 Sobic004G220400--Sobic006G156000 Sobic009G220100 Sobic009G220100 Sobic010G238800--Sobic009G220100 Sobic010G238800--Sobic006G156000 Sobic010G052200 Sobic010G052200 Sobic010G238800--Sobic010G052200 Sobic003G344600 Sobic003G344600 Sobic010G238800--Sobic003G344600 Sobic008G103700 Sobic008G103700 Sobic010G238800--Sobic008G103700 Sobic003G443300 Sobic003G443300 Sobic010G238800--Sobic003G443300 Sobic002G128800 Sobic002G128800 Sobic010G238800--Sobic002G128800 Sobic005G168100 Sobic005G168100 Sobic010G238800--Sobic005G168100 Sobic001G084100 Sobic001G084100 Sobic010G238800--Sobic001G084100 Sobic003G219800 Sobic003G219800 Sobic002G320800--Sobic003G219800 Sobic001G016500 Sobic001G016500 Sobic002G320800--Sobic001G016500 Sobic002G320800--Sobic006G156000 Sobic003G429000 Sobic003G429000 Sobic002G320800--Sobic003G429000 Sobic003G109600 Sobic003G109600 Sobic002G320800--Sobic003G109600 Sobic002G047600 Sobic002G047600 Sobic002G320800--Sobic002G047600 Sobic006G216600 Sobic006G216600 Sobic002G320800--Sobic006G216600 Sobic003G436700 Sobic003G436700 Sobic002G320800--Sobic003G436700 Sobic002G320800--Sobic004G062500 Sobic010G252500 Sobic010G252500 Sobic004G062500--Sobic010G252500 Sobic010G195500 Sobic010G195500 Sobic004G062500--Sobic010G195500 Sobic004G062500--Sobic004G212300 Sobic007G218800 Sobic007G218800 Sobic004G062500--Sobic007G218800 Sobic010G085800 Sobic010G085800 Sobic004G062500--Sobic010G085800 Sobic003G119500 Sobic003G119500 Sobic004G062500--Sobic003G119500 Sobic010G268400 Sobic010G268400 Sobic004G062500--Sobic010G268400 Sobic001G494000 Sobic001G494000 Sobic004G062500--Sobic001G494000 Sobic004G062500--Sobic003G219800 Sobic002G263800 Sobic002G263800 Sobic001G282100--Sobic002G263800 Sobic001G483100 Sobic001G483100 Sobic001G282100--Sobic001G483100 Sobic004G262200 Sobic004G262200 Sobic001G282100--Sobic004G262200 Sobic009G016201 Sobic009G016201 Sobic001G282100--Sobic009G016201 Sobic001G282100--Sobic003G344600 Sobic004G051700 Sobic004G051700 Sobic001G282100--Sobic004G051700 Sobic001G282100--Sobic001G494000 Sobic010G039800 Sobic010G039800 Sobic001G282100--Sobic010G039800 Sobic001G533500 Sobic001G533500 Sobic001G282100--Sobic001G533500 Sobic007G186100--Sobic001G494000 Sobic007G186100--Sobic003G343900 Sobic007G186100--Sobic003G119500 Sobic007G186100--Sobic004G062500 Sobic010G062100 Sobic010G062100 Sobic007G186100--Sobic010G062100 Sobic007G186100--Sobic004G212300 Sobic007G186100--Sobic003G219800 Sobic009G181800 Sobic009G181800 Sobic007G186100--Sobic009G181800 Sobic003G316000 Sobic003G316000 Sobic007G186100--Sobic003G316000 Sobic003G343900--Sobic001G494000 Sobic001G009500 Sobic001G009500 Sobic003G343900--Sobic001G009500 Sobic003G343900--Sobic010G252500 Sobic001G389000 Sobic001G389000 Sobic003G343900--Sobic001G389000 Sobic008G106700 Sobic008G106700 Sobic003G343900--Sobic008G106700 Sobic009G179900 Sobic009G179900 Sobic003G343900--Sobic009G179900 Sobic005G093000 Sobic005G093000 Sobic003G343900--Sobic005G093000 Sobic003G343900--Sobic003G429000 Sobic003G417350 Sobic003G417350 Sobic003G343900--Sobic003G417350 Sobic004G212300--Sobic010G052200 Sobic001G532200 Sobic001G532200 Sobic004G212300--Sobic001G532200 Sobic004G212300--Sobic003G119500 Sobic004G212300--Sobic004G062500 Sobic004G212300--Sobic001G084100 Sobic001G516600 Sobic001G516600 Sobic004G212300--Sobic001G516600 Sobic004G212300--Sobic006G156000 Sobic002G040600 Sobic002G040600 Sobic004G212300--Sobic002G040600 Sobic004G212300--Sobic010G252500 Sobic006G150600 Sobic006G150600 Sobic001G294000--Sobic006G150600 Sobic003G124800 Sobic003G124800 Sobic001G294000--Sobic003G124800 Sobic009G198500 Sobic009G198500 Sobic001G294000--Sobic009G198500 Sobic008G132800 Sobic008G132800 Sobic001G294000--Sobic008G132800 Sobic010G065400 Sobic010G065400 Sobic001G294000--Sobic010G065400 Sobic004G272300 Sobic004G272300 Sobic001G294000--Sobic004G272300 Sobic001G294000--Sobic009G016201 Sobic004G066800 Sobic004G066800 Sobic001G294000--Sobic004G066800 Sobic002G078400 Sobic002G078400 Sobic001G294000--Sobic002G078400 Sobic006G156000--Sobic003G443300 Sobic001G432000 Sobic001G432000 Sobic006G156000--Sobic001G432000 Sobic006G156000--Sobic005G168100 Sobic006G156000--Sobic003G219800 Sobic006G156000--Sobic001G084100 Sobic001G304400 Sobic001G304400 Sobic006G156000--Sobic001G304400 Sobic009G212200 Sobic009G212200 Sobic006G156000--Sobic009G212200 Sobic002G361700 Sobic002G361700 Sobic006G156000--Sobic002G361700 Sobic001G040100 Sobic001G040100 Sobic006G156000--Sobic001G040100
Octagon: transcription factors


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