Gene annotation
Transcriptome id Sobic.003G108200.1
Synonym Sb03g009100
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt C5XFM2
Pfam PF11820
Panther DB PTHR33128 PTHR33128:SF12
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G48660 : Protein of unknown function (DUF 3339)
RAP-DB (Rice) LOC_Os05g01290.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium KQK11231 , KQJ88497
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G108200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G238800 glycosyltransferase family 43 protein, putative, expressed -
2 Sobic.010G225100 DUF640 domain containing protein, putative, expressed -
3 Sobic.001G526200 homeobox protein knotted-1, putative, expressed -
4 Sobic.002G272900 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
5 Sobic.004G325700 CYPRO4, putative, expressed -
6 Sobic.008G161000 protein kinase domain containing protein, expressed -
7 Sobic.004G257300 GPI-anchored protein, putative, expressed -
8 Sobic.004G152400 ribosomal protein L29, putative, expressed K02918: RP-L35e, large subunit ribosomal protein L35e
9 Sobic.009G065000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsIAA15 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
10 Sobic.006G216300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
11 Sobic.003G249800 60S ribosomal protein L18a-1, putative, expressed -
12 Sobic.010G144400 glycosyltransferase, putative, expressed -
13 Sobic.001G505100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09873: aquaporin TIP
14 Sobic.001G125800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lipoxygenase, putative, expressed K15718: linoleate 9S-lipoxygenase
15 Sobic.006G131400 expressed protein -
16 Sobic.002G022400 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
17 Sobic.004G280800 Tannin1 encodes a WD40 protein homologous to the Arabidopsis proanthocyanidin regulator transparent testa glabra1 (TTG1). (PubmedID : 25272193)@WD40 protein(PubMedID : 22699509)@Transcription factor for tannin accumulation in seed(PubMedID : 22699509)@WD domain, G-beta repeat domain containing protein, expressed K11805: DCAF7, DDB1- and CUL4-associated factor 7
18 Sobic.001G389400 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed K17278: membrane-associated progesterone receptor component
19 Sobic.007G107850 - -
20 Sobic.002G210300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@hypro1, putative, expressed -


Gene co-expression network
sample Sobic003G108200 Sobic003G108200 Sobic010G238800 Sobic010G238800 Sobic003G108200--Sobic010G238800 Sobic010G225100 Sobic010G225100 Sobic003G108200--Sobic010G225100 Sobic001G526200 Sobic001G526200 Sobic003G108200--Sobic001G526200 Sobic002G272900 Sobic002G272900 Sobic003G108200--Sobic002G272900 Sobic004G325700 Sobic004G325700 Sobic003G108200--Sobic004G325700 Sobic008G161000 Sobic008G161000 Sobic003G108200--Sobic008G161000 Sobic004G257300 Sobic004G257300 Sobic003G108200--Sobic004G257300 Sobic004G152400 Sobic004G152400 Sobic003G108200--Sobic004G152400 Sobic009G065000 Sobic009G065000 Sobic003G108200--Sobic009G065000 Sobic009G220100 Sobic009G220100 Sobic010G238800--Sobic009G220100 Sobic006G156000 Sobic006G156000 Sobic010G238800--Sobic006G156000 Sobic010G052200 Sobic010G052200 Sobic010G238800--Sobic010G052200 Sobic003G344600 Sobic003G344600 Sobic010G238800--Sobic003G344600 Sobic008G103700 Sobic008G103700 Sobic010G238800--Sobic008G103700 Sobic003G443300 Sobic003G443300 Sobic010G238800--Sobic003G443300 Sobic002G128800 Sobic002G128800 Sobic010G238800--Sobic002G128800 Sobic005G168100 Sobic005G168100 Sobic010G238800--Sobic005G168100 Sobic001G084100 Sobic001G084100 Sobic010G238800--Sobic001G084100 Sobic004G333900 Sobic004G333900 Sobic010G225100--Sobic004G333900 Sobic006G131400 Sobic006G131400 Sobic010G225100--Sobic006G131400 Sobic006G179500 Sobic006G179500 Sobic010G225100--Sobic006G179500 Sobic002G359300 Sobic002G359300 Sobic010G225100--Sobic002G359300 Sobic003G300800 Sobic003G300800 Sobic010G225100--Sobic003G300800 Sobic010G225100--Sobic002G272900 Sobic005G103300 Sobic005G103300 Sobic010G225100--Sobic005G103300 Sobic001G516600 Sobic001G516600 Sobic010G225100--Sobic001G516600 Sobic002G294700 Sobic002G294700 Sobic010G225100--Sobic002G294700 Sobic001G526200--Sobic003G108200 Sobic003G270300 Sobic003G270300 Sobic001G526200--Sobic003G270300 Sobic002G210300 Sobic002G210300 Sobic001G526200--Sobic002G210300 Sobic010G200700 Sobic010G200700 Sobic001G526200--Sobic010G200700 Sobic003G373000 Sobic003G373000 Sobic001G526200--Sobic003G373000 Sobic001G429900 Sobic001G429900 Sobic001G526200--Sobic001G429900 Sobic001G217000 Sobic001G217000 Sobic001G526200--Sobic001G217000 Sobic001G526200--Sobic010G238800 Sobic003G012800 Sobic003G012800 Sobic001G526200--Sobic003G012800 Sobic007G124301 Sobic007G124301 Sobic002G272900--Sobic007G124301 Sobic002G272900--Sobic001G516600 Sobic001G483400 Sobic001G483400 Sobic002G272900--Sobic001G483400 Sobic001G389000 Sobic001G389000 Sobic002G272900--Sobic001G389000 Sobic010G213400 Sobic010G213400 Sobic002G272900--Sobic010G213400 Sobic003G037800 Sobic003G037800 Sobic002G272900--Sobic003G037800 Sobic009G033700 Sobic009G033700 Sobic002G272900--Sobic009G033700 Sobic007G151100 Sobic007G151100 Sobic002G272900--Sobic007G151100 Sobic003G249800 Sobic003G249800 Sobic002G272900--Sobic003G249800 Sobic004G325700--Sobic008G161000 Sobic004G325700--Sobic006G179500 Sobic003G181500 Sobic003G181500 Sobic004G325700--Sobic003G181500 Sobic002G140300 Sobic002G140300 Sobic004G325700--Sobic002G140300 Sobic004G325700--Sobic003G249800 Sobic001G304700 Sobic001G304700 Sobic004G325700--Sobic001G304700 Sobic004G325700--Sobic009G033700 Sobic001G095300 Sobic001G095300 Sobic004G325700--Sobic001G095300 Sobic006G062800 Sobic006G062800 Sobic004G325700--Sobic006G062800 Sobic008G161000--Sobic003G249800 Sobic008G161000--Sobic009G033700 Sobic009G152200 Sobic009G152200 Sobic008G161000--Sobic009G152200 Sobic001G037000 Sobic001G037000 Sobic008G161000--Sobic001G037000 Sobic009G129000 Sobic009G129000 Sobic008G161000--Sobic009G129000 Sobic009G016201 Sobic009G016201 Sobic008G161000--Sobic009G016201 Sobic010G204300 Sobic010G204300 Sobic008G161000--Sobic010G204300 Sobic010G204600 Sobic010G204600 Sobic008G161000--Sobic010G204600 Sobic008G161000--Sobic010G213400 Sobic001G173300 Sobic001G173300 Sobic004G257300--Sobic001G173300 Sobic010G030900 Sobic010G030900 Sobic004G257300--Sobic010G030900 Sobic009G208800 Sobic009G208800 Sobic004G257300--Sobic009G208800 Sobic004G257300--Sobic002G294700 Sobic008G177800 Sobic008G177800 Sobic004G257300--Sobic008G177800 Sobic004G036600 Sobic004G036600 Sobic004G257300--Sobic004G036600 Sobic006G205600 Sobic006G205600 Sobic004G257300--Sobic006G205600 Sobic004G286600 Sobic004G286600 Sobic004G257300--Sobic004G286600 Sobic001G489600 Sobic001G489600 Sobic004G257300--Sobic001G489600 Sobic002G258800 Sobic002G258800 Sobic004G152400--Sobic002G258800 Sobic004G152700 Sobic004G152700 Sobic004G152400--Sobic004G152700 Sobic002G259000 Sobic002G259000 Sobic004G152400--Sobic002G259000 Sobic010G182300 Sobic010G182300 Sobic004G152400--Sobic010G182300 Sobic004G103800 Sobic004G103800 Sobic004G152400--Sobic004G103800 Sobic003G107600 Sobic003G107600 Sobic004G152400--Sobic003G107600 Sobic001G505100 Sobic001G505100 Sobic004G152400--Sobic001G505100 Sobic010G029400 Sobic010G029400 Sobic004G152400--Sobic010G029400 Sobic010G259900 Sobic010G259900 Sobic004G152400--Sobic010G259900 Sobic004G164500 Sobic004G164500 Sobic009G065000--Sobic004G164500 Sobic001G311000 Sobic001G311000 Sobic009G065000--Sobic001G311000 Sobic001G206000 Sobic001G206000 Sobic009G065000--Sobic001G206000 Sobic008G106800 Sobic008G106800 Sobic009G065000--Sobic008G106800 Sobic006G257900 Sobic006G257900 Sobic009G065000--Sobic006G257900 Sobic001G471900 Sobic001G471900 Sobic009G065000--Sobic001G471900 Sobic007G177100 Sobic007G177100 Sobic009G065000--Sobic007G177100 Sobic010G228600 Sobic010G228600 Sobic009G065000--Sobic010G228600 Sobic003G116700 Sobic003G116700 Sobic009G065000--Sobic003G116700
Octagon: transcription factors


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