Gene annotation
Transcriptome id Sobic.001G526200.1
Synonym IXR11, KNAT7
Functional annotation homeobox protein knotted-1, putative, expressed
UniProt A0A1B6QQV9
Pfam PF03790 PF05920 PF03791
Panther DB PTHR11850 PTHR11850:SF74
NCBI CDD KOG0773; Transcription factor MEIS1 and related HOX domain proteins
KEGG Orthology -
Gene Ontology GO:0005634; nucleus GO:0003677DNA binding GO:0006355regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT1G62990 : KNOTTED-like homeobox of Arabidopsis thaliana 7
RAP-DB (Rice) LOC_Os03g03164.2 : homeobox protein knotted-1, putative, expressed
MaizeGDB (Corn) Zm00025a024290 , Zm00025a044961 , Zm00025a053500 , Zm00025a000323
Brachypodium KQK23915 , KQK20926 , KQK07913 , KQK13423 , KQK13422
Barley HORVU1Hr1G015720.1 , HORVU1Hr1G015720.2 , HORVU1Hr1G015720.3 , HORVU1Hr1G015720.4 , HORVU1Hr1G015720.5 , HORVU1Hr1G015720.6 , HORVU1Hr1G015720.7 , HORVU1Hr1G015720.8 , HORVU1Hr1G015720.9 , HORVU4Hr1G009730.1 , HORVU4Hr1G009730.5 , HORVU4Hr1G084680.1 , HORVU4Hr1G084680.2 , HORVU4Hr1G084680.3 , HORVU4Hr1G084680.4 , HORVU4Hr1G084680.5 , HORVU4Hr1G084680.6 , HORVU5Hr1G098570.2 , HORVU5Hr1G098570.3 , HORVU5Hr1G098570.1 , HORVU5Hr1G098570.6 , HORVU5Hr1G098570.7 , HORVU5Hr1G098570.4 , HORVU5Hr1G098570.8 , HORVU4Hr1G009730.12 , HORVU4Hr1G009730.10 , HORVU5Hr1G098570.10 , HORVU4Hr1G009730.9 , HORVU1Hr1G015720.12 , HORVU1Hr1G015720.10 , HORVU1Hr1G015720.11 , HORVU4Hr1G009730.3 , HORVU4Hr1G009730.2
Wheat TraesCS1A02G072800 , TraesCS5A02G405900 , TraesCS4B02G057900 , TraesCS5A02G515000 , TraesCS4D02G019800 , TraesCS5B02G410600 , TraesCS1D02G075700 , TraesCS4A02G291900 , TraesCS4D02G341000 , TraesCS4D02G058000 , TraesCS1B02G091700 , TraesCS4D02G019900 , TraesCS4A02G256700 , TraesCS5D02G415900 , TraesCS4B02G346100 , TraesCS4A02G292100
Populus -


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cDNA sequences
Sobic.001G526200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G108200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.003G270300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
3 Sobic.002G210300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@hypro1, putative, expressed -
4 Sobic.010G200700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.003G373000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
6 Sobic.001G429900 phospholipase A2, putative, expressed -
7 Sobic.001G217000 DUF584 domain containing protein, putative, expressed -
8 Sobic.010G238800 glycosyltransferase family 43 protein, putative, expressed -
9 Sobic.003G012800 AP2 domain containing protein, expressed -
10 Sobic.006G089300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR2, putative, expressed -
11 Sobic.002G379400 CAMK_CAMK_like.7 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
12 Sobic.006G216300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
13 Sobic.009G208800 hydrolase, acting on carbon-nitrogen, putative, expressed -
14 Sobic.003G338900 expressed protein -
15 Sobic.001G513700 down-regulated TF in developmental senescence(PubMedID : 27586543)@BHLH transcription factor, putative, expressed -
16 Sobic.003G082000 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
17 Sobic.004G042700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endoglucanase, putative, expressed -
18 Sobic.001G113700 cytochrome b561, putative, expressed K08360: cytochrome b-561
19 Sobic.001G516600 AMP-binding domain containing protein, expressed K10526: OPC-8:0 CoA ligase 1
20 Sobic.002G272900 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein


Gene co-expression network
sample Sobic001G526200 Sobic001G526200 Sobic003G108200 Sobic003G108200 Sobic001G526200--Sobic003G108200 Sobic003G270300 Sobic003G270300 Sobic001G526200--Sobic003G270300 Sobic002G210300 Sobic002G210300 Sobic001G526200--Sobic002G210300 Sobic010G200700 Sobic010G200700 Sobic001G526200--Sobic010G200700 Sobic003G373000 Sobic003G373000 Sobic001G526200--Sobic003G373000 Sobic001G429900 Sobic001G429900 Sobic001G526200--Sobic001G429900 Sobic001G217000 Sobic001G217000 Sobic001G526200--Sobic001G217000 Sobic010G238800 Sobic010G238800 Sobic001G526200--Sobic010G238800 Sobic003G012800 Sobic003G012800 Sobic001G526200--Sobic003G012800 Sobic003G108200--Sobic010G238800 Sobic010G225100 Sobic010G225100 Sobic003G108200--Sobic010G225100 Sobic003G108200--Sobic001G526200 Sobic002G272900 Sobic002G272900 Sobic003G108200--Sobic002G272900 Sobic004G325700 Sobic004G325700 Sobic003G108200--Sobic004G325700 Sobic008G161000 Sobic008G161000 Sobic003G108200--Sobic008G161000 Sobic004G257300 Sobic004G257300 Sobic003G108200--Sobic004G257300 Sobic004G152400 Sobic004G152400 Sobic003G108200--Sobic004G152400 Sobic009G065000 Sobic009G065000 Sobic003G108200--Sobic009G065000 Sobic003G270300--Sobic001G526200 Sobic003G270300--Sobic001G217000 Sobic001G113700 Sobic001G113700 Sobic003G270300--Sobic001G113700 Sobic003G270300--Sobic002G210300 Sobic003G270300--Sobic003G373000 Sobic006G242100 Sobic006G242100 Sobic003G270300--Sobic006G242100 Sobic001G209800 Sobic001G209800 Sobic003G270300--Sobic001G209800 Sobic001G513700 Sobic001G513700 Sobic003G270300--Sobic001G513700 Sobic003G270300--Sobic003G012800 Sobic009G027900 Sobic009G027900 Sobic002G210300--Sobic009G027900 Sobic003G338900 Sobic003G338900 Sobic002G210300--Sobic003G338900 Sobic002G210300--Sobic001G217000 Sobic002G210300--Sobic003G012800 Sobic009G220200 Sobic009G220200 Sobic002G210300--Sobic009G220200 Sobic001G051800 Sobic001G051800 Sobic002G210300--Sobic001G051800 Sobic003G339100 Sobic003G339100 Sobic002G210300--Sobic003G339100 Sobic002G210300--Sobic002G272900 Sobic002G210300--Sobic001G113700 Sobic004G297200 Sobic004G297200 Sobic010G200700--Sobic004G297200 Sobic006G089300 Sobic006G089300 Sobic010G200700--Sobic006G089300 Sobic010G200700--Sobic003G012800 Sobic006G228300 Sobic006G228300 Sobic010G200700--Sobic006G228300 Sobic010G200700--Sobic003G373000 Sobic009G066800 Sobic009G066800 Sobic010G200700--Sobic009G066800 Sobic002G036100 Sobic002G036100 Sobic010G200700--Sobic002G036100 Sobic010G245800 Sobic010G245800 Sobic010G200700--Sobic010G245800 Sobic002G131800 Sobic002G131800 Sobic010G200700--Sobic002G131800 Sobic003G373000--Sobic010G200700 Sobic003G373000--Sobic003G012800 Sobic003G373000--Sobic002G036100 Sobic004G286600 Sobic004G286600 Sobic003G373000--Sobic004G286600 Sobic003G373000--Sobic010G245800 Sobic003G373000--Sobic006G089300 Sobic003G373000--Sobic009G066800 Sobic003G373000--Sobic001G513700 Sobic001G077400 Sobic001G077400 Sobic003G373000--Sobic001G077400 Sobic006G189700 Sobic006G189700 Sobic001G429900--Sobic006G189700 Sobic001G429900--Sobic002G210300 Sobic008G103700 Sobic008G103700 Sobic001G429900--Sobic008G103700 Sobic001G429900--Sobic010G238800 Sobic002G252000 Sobic002G252000 Sobic001G429900--Sobic002G252000 Sobic002G128800 Sobic002G128800 Sobic001G429900--Sobic002G128800 Sobic001G429900--Sobic001G526200 Sobic007G124301 Sobic007G124301 Sobic001G429900--Sobic007G124301 Sobic002G270000 Sobic002G270000 Sobic001G429900--Sobic002G270000 Sobic001G473900 Sobic001G473900 Sobic001G217000--Sobic001G473900 Sobic001G217000--Sobic001G113700 Sobic002G379400 Sobic002G379400 Sobic001G217000--Sobic002G379400 Sobic010G076600 Sobic010G076600 Sobic001G217000--Sobic010G076600 Sobic001G217000--Sobic003G338900 Sobic001G217000--Sobic002G210300 Sobic009G208800 Sobic009G208800 Sobic001G217000--Sobic009G208800 Sobic001G217000--Sobic004G257300 Sobic001G217000--Sobic009G220200 Sobic009G220100 Sobic009G220100 Sobic010G238800--Sobic009G220100 Sobic006G156000 Sobic006G156000 Sobic010G238800--Sobic006G156000 Sobic010G052200 Sobic010G052200 Sobic010G238800--Sobic010G052200 Sobic003G344600 Sobic003G344600 Sobic010G238800--Sobic003G344600 Sobic010G238800--Sobic008G103700 Sobic003G443300 Sobic003G443300 Sobic010G238800--Sobic003G443300 Sobic010G238800--Sobic002G128800 Sobic005G168100 Sobic005G168100 Sobic010G238800--Sobic005G168100 Sobic001G084100 Sobic001G084100 Sobic010G238800--Sobic001G084100 Sobic003G012800--Sobic010G200700 Sobic003G268700 Sobic003G268700 Sobic003G012800--Sobic003G268700 Sobic003G012800--Sobic003G373000 Sobic003G012800--Sobic006G089300 Sobic003G012800--Sobic006G228300 Sobic003G012800--Sobic001G209800 Sobic003G012800--Sobic001G077400 Sobic009G217600 Sobic009G217600 Sobic003G012800--Sobic009G217600 Sobic003G012800--Sobic002G036100
Octagon: transcription factors


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