Gene annotation
Transcriptome id Sobic.001G429900.1
Synonym Sb01g040430, PLA2-ALPHA, ATSPLA2-ALPHA
Functional annotation phospholipase A2, putative, expressed
UniProt C5WQ82
Pfam -
Panther DB PTHR11716 PTHR11716:SF53
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016042; lipid catabolic process GO:0005509calcium ion binding GO:0004623phospholipase A2 activity


Orthologs (automatic annotation)
TAIR AT2G06925 : Phospholipase A2 family protein
RAP-DB (Rice) LOC_Os03g50030.1 : phospholipase A2, putative, expressed
MaizeGDB (Corn) Zm00025a001684 , Zm00025a033539
Brachypodium KQK22477
Barley HORVU7Hr1G105470.1 , HORVU7Hr1G105410.1 , HORVU4Hr1G061740.4 , HORVU4Hr1G061740.1 , HORVU4Hr1G061740.2 , HORVU4Hr1G061740.3
Wheat TraesCS7A02G457900 , TraesCS4B02G217300 , TraesCS4A02G087100 , TraesCS4A02G087100 , TraesCS7B02G358400 , TraesCS4D02G217600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G189700 zinc finger, C3HC4 type domain containing protein, expressed -
2 Sobic.002G210300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@hypro1, putative, expressed -
3 Sobic.008G103700 nitrilase-associated protein, putative, expressed K18635: protein SPIRAL1 and related proteins
4 Sobic.010G238800 glycosyltransferase family 43 protein, putative, expressed -
5 Sobic.002G252000 CHIT13 - Chitinase family protein precursor, expressed -
6 Sobic.002G128800 fiber protein Fb34, putative, expressed -
7 Sobic.001G526200 homeobox protein knotted-1, putative, expressed -
8 Sobic.007G124301 - -
9 Sobic.002G270000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@BAG domain-containing protein, putative, expressed -
10 Sobic.004G272200 secretory carrier-associated membrane protein, putative, expressed -
11 Sobic.007G002800 phospholipase C, putative, expressed -
12 Sobic.004G318100 adenylate kinase, putative, expressed K13800: CMPK1, UMP-CMP kinase
13 Sobic.004G024300 cyclin, putative, expressed -
14 Sobic.003G270300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
15 Sobic.009G220100 exostosin family domain containing protein, expressed -
16 Sobic.002G338400 uncharacterized secreted protein, putative, expressed -
17 Sobic.006G156000 ferredoxin-thioredoxin reductase, variable chain, putative, expressed -
18 Sobic.002G396400 uncharacterized GPI-anchored protein At5g19240 precursor, putative, expressed -
19 Sobic.003G339100 DUF623 domain containing protein, expressed -
20 Sobic.008G037500 hydrolase, alpha/beta fold family protein, putative, expressed -


Gene co-expression network
sample Sobic001G429900 Sobic001G429900 Sobic006G189700 Sobic006G189700 Sobic001G429900--Sobic006G189700 Sobic002G210300 Sobic002G210300 Sobic001G429900--Sobic002G210300 Sobic008G103700 Sobic008G103700 Sobic001G429900--Sobic008G103700 Sobic010G238800 Sobic010G238800 Sobic001G429900--Sobic010G238800 Sobic002G252000 Sobic002G252000 Sobic001G429900--Sobic002G252000 Sobic002G128800 Sobic002G128800 Sobic001G429900--Sobic002G128800 Sobic001G526200 Sobic001G526200 Sobic001G429900--Sobic001G526200 Sobic007G124301 Sobic007G124301 Sobic001G429900--Sobic007G124301 Sobic002G270000 Sobic002G270000 Sobic001G429900--Sobic002G270000 Sobic004G024300 Sobic004G024300 Sobic006G189700--Sobic004G024300 Sobic002G388700 Sobic002G388700 Sobic006G189700--Sobic002G388700 Sobic006G189700--Sobic008G103700 Sobic006G189700--Sobic001G429900 Sobic002G396400 Sobic002G396400 Sobic006G189700--Sobic002G396400 Sobic001G351000 Sobic001G351000 Sobic006G189700--Sobic001G351000 Sobic002G347500 Sobic002G347500 Sobic006G189700--Sobic002G347500 Sobic004G171400 Sobic004G171400 Sobic006G189700--Sobic004G171400 Sobic008G037500 Sobic008G037500 Sobic006G189700--Sobic008G037500 Sobic009G027900 Sobic009G027900 Sobic002G210300--Sobic009G027900 Sobic003G338900 Sobic003G338900 Sobic002G210300--Sobic003G338900 Sobic001G217000 Sobic001G217000 Sobic002G210300--Sobic001G217000 Sobic003G012800 Sobic003G012800 Sobic002G210300--Sobic003G012800 Sobic009G220200 Sobic009G220200 Sobic002G210300--Sobic009G220200 Sobic001G051800 Sobic001G051800 Sobic002G210300--Sobic001G051800 Sobic003G339100 Sobic003G339100 Sobic002G210300--Sobic003G339100 Sobic002G272900 Sobic002G272900 Sobic002G210300--Sobic002G272900 Sobic001G113700 Sobic001G113700 Sobic002G210300--Sobic001G113700 Sobic008G103700--Sobic004G024300 Sobic001G034700 Sobic001G034700 Sobic008G103700--Sobic001G034700 Sobic008G103700--Sobic010G238800 Sobic003G306100 Sobic003G306100 Sobic008G103700--Sobic003G306100 Sobic003G344600 Sobic003G344600 Sobic008G103700--Sobic003G344600 Sobic003G443300 Sobic003G443300 Sobic008G103700--Sobic003G443300 Sobic002G335300 Sobic002G335300 Sobic008G103700--Sobic002G335300 Sobic008G103700--Sobic002G128800 Sobic001G432000 Sobic001G432000 Sobic008G103700--Sobic001G432000 Sobic009G220100 Sobic009G220100 Sobic010G238800--Sobic009G220100 Sobic006G156000 Sobic006G156000 Sobic010G238800--Sobic006G156000 Sobic010G052200 Sobic010G052200 Sobic010G238800--Sobic010G052200 Sobic010G238800--Sobic003G344600 Sobic010G238800--Sobic008G103700 Sobic010G238800--Sobic003G443300 Sobic010G238800--Sobic002G128800 Sobic005G168100 Sobic005G168100 Sobic010G238800--Sobic005G168100 Sobic001G084100 Sobic001G084100 Sobic010G238800--Sobic001G084100 Sobic002G252000--Sobic002G128800 Sobic002G338400 Sobic002G338400 Sobic002G252000--Sobic002G338400 Sobic001G418100 Sobic001G418100 Sobic002G252000--Sobic001G418100 Sobic002G252000--Sobic002G396400 Sobic002G252000--Sobic006G156000 Sobic001G038300 Sobic001G038300 Sobic002G252000--Sobic001G038300 Sobic001G107100 Sobic001G107100 Sobic002G252000--Sobic001G107100 Sobic002G252000--Sobic003G443300 Sobic003G219800 Sobic003G219800 Sobic002G252000--Sobic003G219800 Sobic002G128800--Sobic002G252000 Sobic007G150800 Sobic007G150800 Sobic002G128800--Sobic007G150800 Sobic002G128800--Sobic001G418100 Sobic002G128800--Sobic002G396400 Sobic001G475500 Sobic001G475500 Sobic002G128800--Sobic001G475500 Sobic002G128800--Sobic010G052200 Sobic002G128800--Sobic006G156000 Sobic002G128800--Sobic003G219800 Sobic002G128800--Sobic003G443300 Sobic003G108200 Sobic003G108200 Sobic001G526200--Sobic003G108200 Sobic003G270300 Sobic003G270300 Sobic001G526200--Sobic003G270300 Sobic001G526200--Sobic002G210300 Sobic010G200700 Sobic010G200700 Sobic001G526200--Sobic010G200700 Sobic003G373000 Sobic003G373000 Sobic001G526200--Sobic003G373000 Sobic001G526200--Sobic001G429900 Sobic001G526200--Sobic001G217000 Sobic001G526200--Sobic010G238800 Sobic001G526200--Sobic003G012800 Sobic007G124301--Sobic002G272900 Sobic007G124301--Sobic010G052200 Sobic001G389000 Sobic001G389000 Sobic007G124301--Sobic001G389000 Sobic003G037800 Sobic003G037800 Sobic007G124301--Sobic003G037800 Sobic002G202600 Sobic002G202600 Sobic007G124301--Sobic002G202600 Sobic001G459800 Sobic001G459800 Sobic007G124301--Sobic001G459800 Sobic001G483400 Sobic001G483400 Sobic007G124301--Sobic001G483400 Sobic009G183300 Sobic009G183300 Sobic007G124301--Sobic009G183300 Sobic009G073300 Sobic009G073300 Sobic007G124301--Sobic009G073300 Sobic002G270000--Sobic001G084100 Sobic002G270000--Sobic002G128800 Sobic002G270000--Sobic010G238800 Sobic001G063500 Sobic001G063500 Sobic002G270000--Sobic001G063500 Sobic009G215000 Sobic009G215000 Sobic002G270000--Sobic009G215000 Sobic002G270000--Sobic002G252000 Sobic002G270000--Sobic006G156000 Sobic002G270000--Sobic002G396400 Sobic002G270000--Sobic010G052200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.