Gene annotation
Transcriptome id Sobic.006G189700.1
Synonym Sb06g026310, BRH1
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5YEH9
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G61460 : brassinosteroid-responsive RING-H2
RAP-DB (Rice) LOC_Os04g49160.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a056670 , Zm00025a010080 , Zm00025a021529
Brachypodium KQK00791
Barley HORVU0Hr1G016480.1
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G024300 cyclin, putative, expressed -
2 Sobic.002G388700 myb-related protein Hv33, putative, expressed K09422: transcription factor MYB, plant
3 Sobic.008G103700 nitrilase-associated protein, putative, expressed K18635: protein SPIRAL1 and related proteins
4 Sobic.001G429900 phospholipase A2, putative, expressed -
5 Sobic.002G396400 uncharacterized GPI-anchored protein At5g19240 precursor, putative, expressed -
6 Sobic.001G351000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplast precursor, putative, expressed K01626: E2.5.1.54, aroF, aroG, 3-deoxy-7-phosphoheptulonate synthase
7 Sobic.002G347500 expressed protein -
8 Sobic.004G171400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
9 Sobic.008G037500 hydrolase, alpha/beta fold family protein, putative, expressed -
10 Sobic.002G389400 OsRCI2-10 - Hydrophobic protein LTI6A, expressed -
11 Sobic.004G259366 - -
12 Sobic.001G459800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase
13 Sobic.006G201400 seed specific protein Bn15D1B, putative, expressed -
14 Sobic.004G050600 P21-Rho-binding domain containing protein, putative, expressed -
15 Sobic.010G238800 glycosyltransferase family 43 protein, putative, expressed -
16 Sobic.004G262400 expressed protein -
17 Sobic.006G149400 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
18 Sobic.004G220000 kinase, pfkB family, putative, expressed K00856: E2.7.1.20, adenosine kinase
19 Sobic.001G138600 VQ domain containing protein, putative, expressed -
20 Sobic.003G306100 chorismate mutase, chloroplast precursor, putative, expressed K01850: chorismate mutase


Gene co-expression network
sample Sobic006G189700 Sobic006G189700 Sobic004G024300 Sobic004G024300 Sobic006G189700--Sobic004G024300 Sobic002G388700 Sobic002G388700 Sobic006G189700--Sobic002G388700 Sobic008G103700 Sobic008G103700 Sobic006G189700--Sobic008G103700 Sobic001G429900 Sobic001G429900 Sobic006G189700--Sobic001G429900 Sobic002G396400 Sobic002G396400 Sobic006G189700--Sobic002G396400 Sobic001G351000 Sobic001G351000 Sobic006G189700--Sobic001G351000 Sobic002G347500 Sobic002G347500 Sobic006G189700--Sobic002G347500 Sobic004G171400 Sobic004G171400 Sobic006G189700--Sobic004G171400 Sobic008G037500 Sobic008G037500 Sobic006G189700--Sobic008G037500 Sobic004G024300--Sobic006G189700 Sobic004G024300--Sobic002G388700 Sobic004G024300--Sobic008G103700 Sobic009G243400 Sobic009G243400 Sobic004G024300--Sobic009G243400 Sobic002G335300 Sobic002G335300 Sobic004G024300--Sobic002G335300 Sobic004G024300--Sobic004G171400 Sobic010G198600 Sobic010G198600 Sobic004G024300--Sobic010G198600 Sobic004G024300--Sobic002G396400 Sobic009G148100 Sobic009G148100 Sobic004G024300--Sobic009G148100 Sobic002G388700--Sobic004G024300 Sobic002G388700--Sobic006G189700 Sobic002G388700--Sobic008G103700 Sobic004G262400 Sobic004G262400 Sobic002G388700--Sobic004G262400 Sobic002G388700--Sobic002G335300 Sobic002G388700--Sobic002G396400 Sobic001G004800 Sobic001G004800 Sobic002G388700--Sobic001G004800 Sobic007G090436 Sobic007G090436 Sobic002G388700--Sobic007G090436 Sobic010G161700 Sobic010G161700 Sobic002G388700--Sobic010G161700 Sobic008G103700--Sobic004G024300 Sobic001G034700 Sobic001G034700 Sobic008G103700--Sobic001G034700 Sobic010G238800 Sobic010G238800 Sobic008G103700--Sobic010G238800 Sobic003G306100 Sobic003G306100 Sobic008G103700--Sobic003G306100 Sobic003G344600 Sobic003G344600 Sobic008G103700--Sobic003G344600 Sobic003G443300 Sobic003G443300 Sobic008G103700--Sobic003G443300 Sobic008G103700--Sobic002G335300 Sobic002G128800 Sobic002G128800 Sobic008G103700--Sobic002G128800 Sobic001G432000 Sobic001G432000 Sobic008G103700--Sobic001G432000 Sobic001G429900--Sobic006G189700 Sobic002G210300 Sobic002G210300 Sobic001G429900--Sobic002G210300 Sobic001G429900--Sobic008G103700 Sobic001G429900--Sobic010G238800 Sobic002G252000 Sobic002G252000 Sobic001G429900--Sobic002G252000 Sobic001G429900--Sobic002G128800 Sobic001G526200 Sobic001G526200 Sobic001G429900--Sobic001G526200 Sobic007G124301 Sobic007G124301 Sobic001G429900--Sobic007G124301 Sobic002G270000 Sobic002G270000 Sobic001G429900--Sobic002G270000 Sobic001G418100 Sobic001G418100 Sobic002G396400--Sobic001G418100 Sobic001G038300 Sobic001G038300 Sobic002G396400--Sobic001G038300 Sobic001G475500 Sobic001G475500 Sobic002G396400--Sobic001G475500 Sobic001G409100 Sobic001G409100 Sobic002G396400--Sobic001G409100 Sobic002G396400--Sobic002G128800 Sobic009G232100 Sobic009G232100 Sobic002G396400--Sobic009G232100 Sobic002G154600 Sobic002G154600 Sobic002G396400--Sobic002G154600 Sobic009G181800 Sobic009G181800 Sobic002G396400--Sobic009G181800 Sobic009G088900 Sobic009G088900 Sobic002G396400--Sobic009G088900 Sobic004G065500 Sobic004G065500 Sobic001G351000--Sobic004G065500 Sobic004G220000 Sobic004G220000 Sobic001G351000--Sobic004G220000 Sobic001G351000--Sobic004G171400 Sobic001G459800 Sobic001G459800 Sobic001G351000--Sobic001G459800 Sobic006G267200 Sobic006G267200 Sobic001G351000--Sobic006G267200 Sobic009G141800 Sobic009G141800 Sobic001G351000--Sobic009G141800 Sobic003G393900 Sobic003G393900 Sobic001G351000--Sobic003G393900 Sobic005G113300 Sobic005G113300 Sobic001G351000--Sobic005G113300 Sobic003G228900 Sobic003G228900 Sobic001G351000--Sobic003G228900 Sobic003G084400 Sobic003G084400 Sobic002G347500--Sobic003G084400 Sobic005G213600 Sobic005G213600 Sobic002G347500--Sobic005G213600 Sobic006G199800 Sobic006G199800 Sobic002G347500--Sobic006G199800 Sobic003G316000 Sobic003G316000 Sobic002G347500--Sobic003G316000 Sobic004G046200 Sobic004G046200 Sobic002G347500--Sobic004G046200 Sobic001G502400 Sobic001G502400 Sobic002G347500--Sobic001G502400 Sobic010G259600 Sobic010G259600 Sobic002G347500--Sobic010G259600 Sobic003G053400 Sobic003G053400 Sobic002G347500--Sobic003G053400 Sobic001G304100 Sobic001G304100 Sobic002G347500--Sobic001G304100 Sobic005G011300 Sobic005G011300 Sobic004G171400--Sobic005G011300 Sobic004G171400--Sobic003G393900 Sobic004G141200 Sobic004G141200 Sobic004G171400--Sobic004G141200 Sobic001G140900 Sobic001G140900 Sobic004G171400--Sobic001G140900 Sobic004G100700 Sobic004G100700 Sobic004G171400--Sobic004G100700 Sobic004G171400--Sobic003G228900 Sobic004G171400--Sobic001G459800 Sobic002G188900 Sobic002G188900 Sobic004G171400--Sobic002G188900 Sobic003G369100 Sobic003G369100 Sobic004G171400--Sobic003G369100 Sobic008G037500--Sobic001G459800 Sobic008G037500--Sobic004G065500 Sobic008G037500--Sobic009G141800 Sobic008G037500--Sobic006G267200 Sobic009G105600 Sobic009G105600 Sobic008G037500--Sobic009G105600 Sobic008G037500--Sobic001G351000 Sobic004G259366 Sobic004G259366 Sobic008G037500--Sobic004G259366 Sobic003G037800 Sobic003G037800 Sobic008G037500--Sobic003G037800 Sobic004G321300 Sobic004G321300 Sobic008G037500--Sobic004G321300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.