Gene annotation
Transcriptome id Sobic.004G042700.1
Synonym AtGH9B8, Sb04g003690, GH9B8
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
endoglucanase, putative, expressed
UniProt C5XUQ6
Pfam PF00759
Panther DB PTHR22298 PTHR22298:SF53
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT2G32990 : glycosyl hydrolase 9B8
RAP-DB (Rice) LOC_Os02g05744.1 : endoglucanase, putative, expressed
MaizeGDB (Corn) Zm00025a019006 , Zm00025a037591 , Zm00025a018779 , Zm00025a035938 , Zm00025a013859 , Zm00025a021973 , Zm00025a049387 , Zm00025a032681 , Zm00025a046876
Brachypodium KQJ93361 , KQJ98284 , KQK02009 , KQJ90132
Barley HORVU6Hr1G077010.1 , HORVU6Hr1G077010.3 , HORVU6Hr1G077010.2 , HORVU6Hr1G077010.5 , HORVU6Hr1G077010.4 , HORVU6Hr1G077010.7 , HORVU6Hr1G077010.8 , HORVU6Hr1G022270.9 , HORVU6Hr1G022270.8 , HORVU6Hr1G077010.21 , HORVU6Hr1G077010.22 , HORVU5Hr1G060140.5 , HORVU5Hr1G060140.7 , HORVU5Hr1G060140.1 , HORVU6Hr1G022270.11 , HORVU6Hr1G022270.10 , HORVU5Hr1G060140.8 , HORVU5Hr1G060140.9 , HORVU7Hr1G040680.6 , HORVU7Hr1G040680.5 , HORVU7Hr1G040680.4 , HORVU7Hr1G040680.3 , HORVU7Hr1G040680.2 , HORVU6Hr1G077010.14 , HORVU6Hr1G077010.17 , HORVU6Hr1G077010.16 , HORVU6Hr1G077010.11 , HORVU6Hr1G077010.10 , HORVU6Hr1G077010.13 , HORVU6Hr1G077010.12 , HORVU6Hr1G077010.19 , HORVU6Hr1G077010.18 , HORVU5Hr1G060140.12 , HORVU5Hr1G060140.10 , HORVU5Hr1G060140.11 , HORVU7Hr1G029660.1 , HORVU7Hr1G029660.2 , HORVU7Hr1G029660.3 , HORVU6Hr1G022270.7 , HORVU6Hr1G022270.6 , HORVU6Hr1G022270.5 , HORVU6Hr1G022270.4 , HORVU6Hr1G022270.3 , HORVU6Hr1G022270.2 , HORVU6Hr1G022270.1 , HORVU3Hr1G029470.3 , HORVU3Hr1G029470.1 , HORVU3Hr1G029470.2 , HORVU3Hr1G029470.5 , HORVU3Hr1G029470.4 , HORVU3Hr1G029470.7 , HORVU3Hr1G029470.6 , HORVU3Hr1G029470.9 , HORVU3Hr1G029470.8 , HORVU0Hr1G023830.1 , HORVU7Hr1G029680.4 , HORVU7Hr1G029680.2 , HORVU7Hr1G029680.3 , HORVU7Hr1G029680.1 , HORVU5Hr1G052830.1 , HORVU5Hr1G052830.2 , HORVU6Hr1G022300.1 , HORVU0Hr1G023830.4 , HORVU0Hr1G023830.5 , HORVU0Hr1G023830.6 , HORVU0Hr1G023830.2 , HORVU0Hr1G023830.3 , HORVU7Hr1G040720.1 , HORVU7Hr1G040720.2
Wheat TraesCS5A02G172200 , TraesCS5A02G172200 , TraesCS6B02G342600 , TraesCS3D02G153400 , TraesCS6A02G122100 , TraesCS7A02G144500 , TraesCS7D02G146000 , TraesCS6D02G291800 , TraesCS5B02G201100 , TraesCSU02G093600 , TraesCS5B02G169600 , TraesCS6B02G150300 , TraesCS7B02G047000 , TraesCS7A02G144700 , TraesCS5D02G176800 , TraesCS7B02G104600 , TraesCS5D02G208900 , TraesCS6D02G112100 , TraesCS7A02G197900 , TraesCS5A02G202600 , TraesCS3A02G144600 , TraesCS7B02G046900 , TraesCS7A02G144400 , TraesCS7D02G201000 , TraesCS6A02G312400 , TraesCS6A02G312400 , TraesCS5A02G172100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G532200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsRhmbd7 - Putative Rhomboid homologue, expressed -
2 Sobic.003G037800 transferase family protein, putative, expressed -
3 Sobic.010G052200 "caffeoylCoA O-methyltransferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@S-adenosyl methionine (SAM)-dependent O-methyltransferase(PubMedID : 30289910)@enzyme involved in monolignol synthesis(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase(PubMedID : 27457122)@caffeoyl-CoA O-methyltransferase, putative, expressed K00588: caffeoyl-CoA O-methyltransferase
4 Sobic.004G212300 determined the crystal structures of SbHCT in its apo-form and ternary complex with shikimate and p-coumaroyl-CoA(PubMedID : 23624856)@"shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
5 Sobic.001G516600 AMP-binding domain containing protein, expressed K10526: OPC-8:0 CoA ligase 1
6 Sobic.003G319500 receptor protein kinase, putative, expressed -
7 Sobic.002G245900 AGC_PVPK_like_CDK8.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
8 Sobic.002G202600 joka8, putative, expressed -
9 Sobic.002G176100 membrane protein, putative, expressed -
10 Sobic.003G119500 expressed protein -
11 Sobic.009G073300 harpin-induced protein 1 domain containing protein, expressed -
12 Sobic.009G008300 expressed protein -
13 Sobic.008G037500 hydrolase, alpha/beta fold family protein, putative, expressed -
14 Sobic.002G245100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@pirin, putative, expressed K06911: quercetin 2,3-dioxygenase
15 Sobic.010G252401 - K14488: SAUR family protein
16 Sobic.001G084100 UDP-glucose 6-dehydrogenase 5(PubMedID : 26186930)@UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase
17 Sobic.009G181800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 9484480)@cytochrome P450, putative, expressed K09754: CYP98A, 5-O-(4-coumaroyl)-D-quinate 3'-monooxygenase
18 Sobic.005G168800 DJ-1 family protein, putative, expressed K18881: D-lactate dehydratase
19 Sobic.002G003800 plastocyanin-like domain containing protein, putative, expressed -
20 Sobic.001G389000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@WRKY55, expressed -


Gene co-expression network
sample Sobic004G042700 Sobic004G042700 Sobic001G532200 Sobic001G532200 Sobic004G042700--Sobic001G532200 Sobic003G037800 Sobic003G037800 Sobic004G042700--Sobic003G037800 Sobic010G052200 Sobic010G052200 Sobic004G042700--Sobic010G052200 Sobic004G212300 Sobic004G212300 Sobic004G042700--Sobic004G212300 Sobic001G516600 Sobic001G516600 Sobic004G042700--Sobic001G516600 Sobic003G319500 Sobic003G319500 Sobic004G042700--Sobic003G319500 Sobic002G245900 Sobic002G245900 Sobic004G042700--Sobic002G245900 Sobic002G202600 Sobic002G202600 Sobic004G042700--Sobic002G202600 Sobic002G176100 Sobic002G176100 Sobic004G042700--Sobic002G176100 Sobic001G532200--Sobic001G516600 Sobic001G084100 Sobic001G084100 Sobic001G532200--Sobic001G084100 Sobic001G532200--Sobic004G212300 Sobic001G513700 Sobic001G513700 Sobic001G532200--Sobic001G513700 Sobic009G248500 Sobic009G248500 Sobic001G532200--Sobic009G248500 Sobic007G151100 Sobic007G151100 Sobic001G532200--Sobic007G151100 Sobic001G532200--Sobic010G052200 Sobic009G073300 Sobic009G073300 Sobic001G532200--Sobic009G073300 Sobic009G027900 Sobic009G027900 Sobic001G532200--Sobic009G027900 Sobic003G429000 Sobic003G429000 Sobic003G037800--Sobic003G429000 Sobic002G245100 Sobic002G245100 Sobic003G037800--Sobic002G245100 Sobic001G389000 Sobic001G389000 Sobic003G037800--Sobic001G389000 Sobic009G033700 Sobic009G033700 Sobic003G037800--Sobic009G033700 Sobic009G159400 Sobic009G159400 Sobic003G037800--Sobic009G159400 Sobic005G018700 Sobic005G018700 Sobic003G037800--Sobic005G018700 Sobic006G183400 Sobic006G183400 Sobic003G037800--Sobic006G183400 Sobic004G321300 Sobic004G321300 Sobic003G037800--Sobic004G321300 Sobic004G340900 Sobic004G340900 Sobic003G037800--Sobic004G340900 Sobic010G052200--Sobic004G212300 Sobic010G052200--Sobic001G084100 Sobic010G052200--Sobic001G532200 Sobic002G128800 Sobic002G128800 Sobic010G052200--Sobic002G128800 Sobic007G124301 Sobic007G124301 Sobic010G052200--Sobic007G124301 Sobic010G252401 Sobic010G252401 Sobic010G052200--Sobic010G252401 Sobic010G052200--Sobic003G037800 Sobic005G113300 Sobic005G113300 Sobic010G052200--Sobic005G113300 Sobic006G156000 Sobic006G156000 Sobic010G052200--Sobic006G156000 Sobic004G212300--Sobic010G052200 Sobic004G212300--Sobic001G532200 Sobic003G119500 Sobic003G119500 Sobic004G212300--Sobic003G119500 Sobic004G062500 Sobic004G062500 Sobic004G212300--Sobic004G062500 Sobic004G212300--Sobic001G084100 Sobic004G212300--Sobic001G516600 Sobic004G212300--Sobic006G156000 Sobic002G040600 Sobic002G040600 Sobic004G212300--Sobic002G040600 Sobic010G252500 Sobic010G252500 Sobic004G212300--Sobic010G252500 Sobic001G173300 Sobic001G173300 Sobic001G516600--Sobic001G173300 Sobic001G516600--Sobic007G151100 Sobic001G516600--Sobic003G037800 Sobic003G296700 Sobic003G296700 Sobic001G516600--Sobic003G296700 Sobic010G268400 Sobic010G268400 Sobic001G516600--Sobic010G268400 Sobic001G516600--Sobic001G532200 Sobic006G131400 Sobic006G131400 Sobic001G516600--Sobic006G131400 Sobic008G177800 Sobic008G177800 Sobic001G516600--Sobic008G177800 Sobic001G516600--Sobic002G245100 Sobic003G319500--Sobic002G176100 Sobic003G417200 Sobic003G417200 Sobic003G319500--Sobic003G417200 Sobic009G111000 Sobic009G111000 Sobic003G319500--Sobic009G111000 Sobic002G213600 Sobic002G213600 Sobic003G319500--Sobic002G213600 Sobic001G304100 Sobic001G304100 Sobic003G319500--Sobic001G304100 Sobic001G139100 Sobic001G139100 Sobic003G319500--Sobic001G139100 Sobic001G169500 Sobic001G169500 Sobic003G319500--Sobic001G169500 Sobic005G107900 Sobic005G107900 Sobic003G319500--Sobic005G107900 Sobic003G084400 Sobic003G084400 Sobic003G319500--Sobic003G084400 Sobic009G008300 Sobic009G008300 Sobic002G245900--Sobic009G008300 Sobic007G133600 Sobic007G133600 Sobic002G245900--Sobic007G133600 Sobic010G067300 Sobic010G067300 Sobic002G245900--Sobic010G067300 Sobic001G076800 Sobic001G076800 Sobic002G245900--Sobic001G076800 Sobic004G335600 Sobic004G335600 Sobic002G245900--Sobic004G335600 Sobic002G245900--Sobic004G042700 Sobic004G099500 Sobic004G099500 Sobic002G245900--Sobic004G099500 Sobic001G239400 Sobic001G239400 Sobic002G245900--Sobic001G239400 Sobic009G032700 Sobic009G032700 Sobic002G245900--Sobic009G032700 Sobic002G202600--Sobic002G245100 Sobic001G119000 Sobic001G119000 Sobic002G202600--Sobic001G119000 Sobic002G202600--Sobic003G037800 Sobic002G202600--Sobic001G389000 Sobic003G430400 Sobic003G430400 Sobic002G202600--Sobic003G430400 Sobic003G158500 Sobic003G158500 Sobic002G202600--Sobic003G158500 Sobic002G202600--Sobic003G429000 Sobic002G202600--Sobic009G159400 Sobic002G202600--Sobic005G018700 Sobic002G176100--Sobic003G319500 Sobic002G176100--Sobic009G111000 Sobic004G141100 Sobic004G141100 Sobic002G176100--Sobic004G141100 Sobic010G008400 Sobic010G008400 Sobic002G176100--Sobic010G008400 Sobic002G176100--Sobic003G417200 Sobic010G184800 Sobic010G184800 Sobic002G176100--Sobic010G184800 Sobic008G009400 Sobic008G009400 Sobic002G176100--Sobic008G009400 Sobic002G176100--Sobic001G304100 Sobic009G188000 Sobic009G188000 Sobic002G176100--Sobic009G188000
Octagon: transcription factors


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