Gene annotation
Transcriptome id Sobic.001G125800.1,Sobic.001G125800.2
Synonym Sb01g011040, LOX5
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
lipoxygenase, putative, expressed
UniProt A0A1Z5S5D8 , C5WNU8
Pfam PF01477 PF00305 PF00305
Panther DB PTHR11771 PTHR11771:SF53
NCBI CDD -
KEGG Orthology K15718; linoleate 9S-lipoxygenase
Gene Ontology GO:0016702; oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen GO:0005515protein binding GO:0016702oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen


Orthologs (automatic annotation)
TAIR AT3G22400 : PLAT/LH2 domain-containing lipoxygenase family protein
RAP-DB (Rice) LOC_Os03g49380.1 : lipoxygenase, putative, expressed
MaizeGDB (Corn) Zm00025a007722 , Zm00025a007727 , Zm00025a007726 , Zm00025a026461 , Zm00025a007723 , Zm00025a017057 , Zm00025a026458
Brachypodium KQK13306 , KQK13307 , KQK13661
Barley HORVU5Hr1G054200.1 , HORVU4Hr1G005920.58 , HORVU4Hr1G005920.14 , HORVU4Hr1G005920.15 , HORVU4Hr1G005920.16 , HORVU4Hr1G005920.17 , HORVU4Hr1G005920.10 , HORVU4Hr1G005920.11 , HORVU4Hr1G005920.12 , HORVU4Hr1G005920.13 , HORVU5Hr1G093700.18 , HORVU5Hr1G093700.19 , HORVU5Hr1G093700.17 , HORVU5Hr1G093700.14 , HORVU5Hr1G093700.15 , HORVU5Hr1G093700.13 , HORVU5Hr1G093700.10 , HORVU5Hr1G093700.11 , HORVU4Hr1G005920.29 , HORVU4Hr1G005920.28 , HORVU4Hr1G005920.20 , HORVU4Hr1G005920.23 , HORVU4Hr1G005920.22 , HORVU4Hr1G005920.25 , HORVU4Hr1G005920.27 , HORVU4Hr1G005920.26 , HORVU4Hr1G005920.38 , HORVU4Hr1G005920.39 , HORVU4Hr1G005920.36 , HORVU4Hr1G005920.37 , HORVU4Hr1G005920.34 , HORVU4Hr1G005920.32 , HORVU4Hr1G005920.33 , HORVU4Hr1G005920.30 , HORVU4Hr1G005920.31 , HORVU4Hr1G005920.49 , HORVU4Hr1G005920.48 , HORVU4Hr1G005920.40 , HORVU4Hr1G005920.47 , HORVU4Hr1G005920.46 , HORVU4Hr1G005920.45 , HORVU4Hr1G005920.44 , HORVU5Hr1G093700.9 , HORVU5Hr1G093700.4 , HORVU5Hr1G093700.5 , HORVU5Hr1G093700.6 , HORVU5Hr1G093700.7 , HORVU5Hr1G093700.1 , HORVU5Hr1G093700.2 , HORVU5Hr1G093700.3 , HORVU5Hr1G117110.2 , HORVU5Hr1G117110.1 , HORVU4Hr1G005920.59 , HORVU4Hr1G005920.52 , HORVU4Hr1G005920.54 , HORVU4Hr1G005920.55 , HORVU4Hr1G005920.56 , HORVU4Hr1G005920.57 , HORVU4Hr1G005920.8 , HORVU4Hr1G005920.9 , HORVU4Hr1G005920.6 , HORVU4Hr1G005920.7 , HORVU4Hr1G005920.4 , HORVU4Hr1G005920.5 , HORVU4Hr1G005920.2 , HORVU4Hr1G005920.3 , HORVU4Hr1G005920.1 , HORVU5Hr1G093700.23 , HORVU5Hr1G093700.22 , HORVU5Hr1G093700.21 , HORVU5Hr1G093700.20 , HORVU4Hr1G005920.60
Wheat TraesCS4D02G035100 , TraesCS4D02G035100 , TraesCS5D02G388700 , TraesCS4B02G037900 , TraesCS4B02G037900 , TraesCS4D02G035200 , TraesCS5D02G513100 , TraesCS6A02G132500 , TraesCS4A02G275900 , TraesCS4B02G037800 , TraesCS6A02G132200 , TraesCS6B02G160400 , TraesCS5B02G382300 , TraesCS4B02G037700 , TraesCS4B02G037700 , TraesCS4B02G037700 , TraesCS3B02G602500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G129000 E3 ubiquitin-protein ligase MGRN1, putative, expressed -
2 Sobic.001G516600 AMP-binding domain containing protein, expressed K10526: OPC-8:0 CoA ligase 1
3 Sobic.004G036600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@activator of 90 kDa heat shock protein ATPase homolog, putative, expressed -
4 Sobic.008G177800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
5 Sobic.010G217800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.002G294700 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
7 Sobic.003G037800 transferase family protein, putative, expressed -
8 Sobic.009G033700 protein kinase, putative, expressed K13436: pto-interacting protein 1
9 Sobic.009G200700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@VQ domain containing protein, putative, expressed -
10 Sobic.001G107400 helix-loop-helix DNA-binding domain containing protein, expressed -
11 Sobic.006G231100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
12 Sobic.001G483400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lipoxygenase protein, putative, expressed K00454: lipoxygenase
13 Sobic.010G086200 GRAM domain containing protein, expressed -
14 Sobic.006G230900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
15 Sobic.010G268400 eukaryotic aspartyl protease domain containing protein, expressed -
16 Sobic.010G149300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
17 Sobic.001G205350 - -
18 Sobic.006G183400 OsRhmbd11 - Putative Rhomboid homologue, expressed -
19 Sobic.006G231200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
20 Sobic.002G140300 plastocyanin-like domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G125800 Sobic001G125800 Sobic009G129000 Sobic009G129000 Sobic001G125800--Sobic009G129000 Sobic001G516600 Sobic001G516600 Sobic001G125800--Sobic001G516600 Sobic004G036600 Sobic004G036600 Sobic001G125800--Sobic004G036600 Sobic008G177800 Sobic008G177800 Sobic001G125800--Sobic008G177800 Sobic010G217800 Sobic010G217800 Sobic001G125800--Sobic010G217800 Sobic002G294700 Sobic002G294700 Sobic001G125800--Sobic002G294700 Sobic003G037800 Sobic003G037800 Sobic001G125800--Sobic003G037800 Sobic009G033700 Sobic009G033700 Sobic001G125800--Sobic009G033700 Sobic009G200700 Sobic009G200700 Sobic001G125800--Sobic009G200700 Sobic010G086200 Sobic010G086200 Sobic009G129000--Sobic010G086200 Sobic005G028700 Sobic005G028700 Sobic009G129000--Sobic005G028700 Sobic009G183300 Sobic009G183300 Sobic009G129000--Sobic009G183300 Sobic009G129000--Sobic009G033700 Sobic009G129000--Sobic009G200700 Sobic004G065500 Sobic004G065500 Sobic009G129000--Sobic004G065500 Sobic009G129000--Sobic010G217800 Sobic006G267200 Sobic006G267200 Sobic009G129000--Sobic006G267200 Sobic010G204600 Sobic010G204600 Sobic009G129000--Sobic010G204600 Sobic001G173300 Sobic001G173300 Sobic001G516600--Sobic001G173300 Sobic007G151100 Sobic007G151100 Sobic001G516600--Sobic007G151100 Sobic001G516600--Sobic003G037800 Sobic003G296700 Sobic003G296700 Sobic001G516600--Sobic003G296700 Sobic010G268400 Sobic010G268400 Sobic001G516600--Sobic010G268400 Sobic001G532200 Sobic001G532200 Sobic001G516600--Sobic001G532200 Sobic006G131400 Sobic006G131400 Sobic001G516600--Sobic006G131400 Sobic001G516600--Sobic008G177800 Sobic002G245100 Sobic002G245100 Sobic001G516600--Sobic002G245100 Sobic004G036600--Sobic002G294700 Sobic004G036600--Sobic008G177800 Sobic006G231100 Sobic006G231100 Sobic004G036600--Sobic006G231100 Sobic004G036600--Sobic001G173300 Sobic010G234600 Sobic010G234600 Sobic004G036600--Sobic010G234600 Sobic004G036600--Sobic001G516600 Sobic002G374100 Sobic002G374100 Sobic004G036600--Sobic002G374100 Sobic009G141800 Sobic009G141800 Sobic004G036600--Sobic009G141800 Sobic009G217000 Sobic009G217000 Sobic004G036600--Sobic009G217000 Sobic008G177800--Sobic002G294700 Sobic008G177800--Sobic006G231100 Sobic008G177800--Sobic010G234600 Sobic004G286600 Sobic004G286600 Sobic008G177800--Sobic004G286600 Sobic002G415600 Sobic002G415600 Sobic008G177800--Sobic002G415600 Sobic008G177800--Sobic010G217800 Sobic009G255500 Sobic009G255500 Sobic008G177800--Sobic009G255500 Sobic006G230900 Sobic006G230900 Sobic008G177800--Sobic006G230900 Sobic001G077700 Sobic001G077700 Sobic008G177800--Sobic001G077700 Sobic010G217800--Sobic002G415600 Sobic010G217800--Sobic006G230900 Sobic003G144700 Sobic003G144700 Sobic010G217800--Sobic003G144700 Sobic003G123600 Sobic003G123600 Sobic010G217800--Sobic003G123600 Sobic006G231200 Sobic006G231200 Sobic010G217800--Sobic006G231200 Sobic010G217800--Sobic006G231100 Sobic010G217800--Sobic006G267200 Sobic010G220200 Sobic010G220200 Sobic010G217800--Sobic010G220200 Sobic010G217800--Sobic008G177800 Sobic002G294700--Sobic008G177800 Sobic002G294700--Sobic010G234600 Sobic002G294700--Sobic006G231100 Sobic002G294700--Sobic002G374100 Sobic002G294700--Sobic004G286600 Sobic002G294700--Sobic001G077700 Sobic010G246000 Sobic010G246000 Sobic002G294700--Sobic010G246000 Sobic002G294700--Sobic004G036600 Sobic002G278500 Sobic002G278500 Sobic002G294700--Sobic002G278500 Sobic003G429000 Sobic003G429000 Sobic003G037800--Sobic003G429000 Sobic003G037800--Sobic002G245100 Sobic001G389000 Sobic001G389000 Sobic003G037800--Sobic001G389000 Sobic003G037800--Sobic009G033700 Sobic009G159400 Sobic009G159400 Sobic003G037800--Sobic009G159400 Sobic005G018700 Sobic005G018700 Sobic003G037800--Sobic005G018700 Sobic006G183400 Sobic006G183400 Sobic003G037800--Sobic006G183400 Sobic004G321300 Sobic004G321300 Sobic003G037800--Sobic004G321300 Sobic004G340900 Sobic004G340900 Sobic003G037800--Sobic004G340900 Sobic009G033700--Sobic010G086200 Sobic009G033700--Sobic003G037800 Sobic001G281400 Sobic001G281400 Sobic009G033700--Sobic001G281400 Sobic003G249800 Sobic003G249800 Sobic009G033700--Sobic003G249800 Sobic007G198100 Sobic007G198100 Sobic009G033700--Sobic007G198100 Sobic009G033700--Sobic009G129000 Sobic009G033700--Sobic002G245100 Sobic009G143400 Sobic009G143400 Sobic009G033700--Sobic009G143400 Sobic009G033700--Sobic004G065500 Sobic002G140300 Sobic002G140300 Sobic009G200700--Sobic002G140300 Sobic009G036100 Sobic009G036100 Sobic009G200700--Sobic009G036100 Sobic003G324400 Sobic003G324400 Sobic009G200700--Sobic003G324400 Sobic002G356101 Sobic002G356101 Sobic009G200700--Sobic002G356101 Sobic006G165100 Sobic006G165100 Sobic009G200700--Sobic006G165100 Sobic001G040200 Sobic001G040200 Sobic009G200700--Sobic001G040200 Sobic009G200700--Sobic009G129000 Sobic006G230500 Sobic006G230500 Sobic009G200700--Sobic006G230500 Sobic001G258300 Sobic001G258300 Sobic009G200700--Sobic001G258300
Octagon: transcription factors


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