Gene annotation
Transcriptome id Sobic.001G265600.1
Synonym Sb01g025920
Functional annotation aldose 1-epimerase, putative, expressed
UniProt C5WP07
Pfam PF01263
Panther DB PTHR10091 PTHR10091:SF8
NCBI CDD KOG1604; Predicted mutarotase
KEGG Orthology K01785; galM, aldose 1-epimerase
Gene Ontology GO:0016853; isomerase activity GO:0005975carbohydrate metabolic process


Orthologs (automatic annotation)
TAIR AT3G17940 : Galactose mutarotase-like superfamily protein
RAP-DB (Rice) LOC_Os10g06720.1 : aldose 1-epimerase, putative, expressed
MaizeGDB (Corn) Zm00025a009004
Brachypodium KQJ96086
Barley HORVU2Hr1G034040.3 , HORVU2Hr1G034040.2 , HORVU2Hr1G034040.1
Wheat TraesCS2D02G188800 , TraesCS2D02G188800 , TraesCS2A02G180200 , TraesCS2A02G180200
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G265600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G226200 neutral ceramidase precursor, putative, expressed K12349: neutral ceramidase
2 Sobic.002G415900 acyl-CoA dehydrogenase family member 10, putative, expressed K00249: ACADM, acyl-CoA dehydrogenase
3 Sobic.008G186200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
4 Sobic.010G134400 diacylglycerol O-acyltransferase, putative, expressed K14457: MOGAT2, 2-acylglycerol O-acyltransferase 2
5 Sobic.002G058500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FAD-linked oxidoreductase protein, putative, expressed K18204: D-2-hydroxyglutarate dehydrogenase
6 Sobic.009G069000 AGC_AGC_other_NDRh_TRCd.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
7 Sobic.003G280300 STE_MEK_ste7_MAP2K.2 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04368: MAP2K1, mitogen-activated protein kinase kinase 1
8 Sobic.005G079900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@F-box domain containing protein, expressed -
9 Sobic.009G234800 aspartic proteinase oryzasin-1 precursor, putative, expressed K08245: phytepsin
10 Sobic.004G101900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@citrate synthase, putative, expressed K01647: CS, citrate synthase
11 Sobic.001G321000 oxidoreductase, putative, expressed -
12 Sobic.001G395700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ proteins of unknown function domain containing protein, expressed -
13 Sobic.006G139000 carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed -
14 Sobic.004G124200 3-hydroxyacyl-CoA dehydrogenase, putative, expressed K10527: enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase
15 Sobic.003G200100 DUF630/DUF632 domains containing protein, putative, expressed -
16 Sobic.001G280000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsSCP46 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
17 Sobic.002G215700 similar to Aldehyde dehydrogenase(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Aldehyde dehydrogenase B4(PubMedID : 26320239)@Zinc finger(C3H4-type Ring finger) family protein(PubMedID : 26320239)@a glutamate S-semialdehyde dehydrogenase(PubMedID : 26320239)@aldehyde dehydrogenase, putative, expressed K14085: aldehyde dehydrogenase family 7 member A1
18 Sobic.008G061100 expressed protein -
19 Sobic.003G303300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aminotransferase, classes I and II, domain containing protein, expressed K14454: aspartate aminotransferase, cytoplasmic
20 Sobic.007G028100 WD repeat-containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G265600 Sobic001G265600 Sobic003G226200 Sobic003G226200 Sobic001G265600--Sobic003G226200 Sobic002G415900 Sobic002G415900 Sobic001G265600--Sobic002G415900 Sobic008G186200 Sobic008G186200 Sobic001G265600--Sobic008G186200 Sobic010G134400 Sobic010G134400 Sobic001G265600--Sobic010G134400 Sobic002G058500 Sobic002G058500 Sobic001G265600--Sobic002G058500 Sobic009G069000 Sobic009G069000 Sobic001G265600--Sobic009G069000 Sobic003G280300 Sobic003G280300 Sobic001G265600--Sobic003G280300 Sobic005G079900 Sobic005G079900 Sobic001G265600--Sobic005G079900 Sobic009G234800 Sobic009G234800 Sobic001G265600--Sobic009G234800 Sobic003G226200--Sobic009G234800 Sobic003G226200--Sobic002G058500 Sobic003G226200--Sobic005G079900 Sobic007G041400 Sobic007G041400 Sobic003G226200--Sobic007G041400 Sobic003G226200--Sobic001G265600 Sobic003G226200--Sobic002G415900 Sobic007G068100 Sobic007G068100 Sobic003G226200--Sobic007G068100 Sobic002G215700 Sobic002G215700 Sobic003G226200--Sobic002G215700 Sobic004G101900 Sobic004G101900 Sobic003G226200--Sobic004G101900 Sobic002G415900--Sobic007G068100 Sobic001G474500 Sobic001G474500 Sobic002G415900--Sobic001G474500 Sobic009G057300 Sobic009G057300 Sobic002G415900--Sobic009G057300 Sobic003G388251 Sobic003G388251 Sobic002G415900--Sobic003G388251 Sobic001G111150 Sobic001G111150 Sobic002G415900--Sobic001G111150 Sobic001G322700 Sobic001G322700 Sobic002G415900--Sobic001G322700 Sobic003G200100 Sobic003G200100 Sobic002G415900--Sobic003G200100 Sobic002G415900--Sobic003G226200 Sobic004G124200 Sobic004G124200 Sobic002G415900--Sobic004G124200 Sobic002G364800 Sobic002G364800 Sobic008G186200--Sobic002G364800 Sobic002G189400 Sobic002G189400 Sobic008G186200--Sobic002G189400 Sobic008G186200--Sobic001G265600 Sobic004G237400 Sobic004G237400 Sobic008G186200--Sobic004G237400 Sobic004G177300 Sobic004G177300 Sobic008G186200--Sobic004G177300 Sobic007G184500 Sobic007G184500 Sobic008G186200--Sobic007G184500 Sobic002G262900 Sobic002G262900 Sobic008G186200--Sobic002G262900 Sobic008G156700 Sobic008G156700 Sobic008G186200--Sobic008G156700 Sobic006G271200 Sobic006G271200 Sobic008G186200--Sobic006G271200 Sobic010G134400--Sobic001G265600 Sobic004G182800 Sobic004G182800 Sobic010G134400--Sobic004G182800 Sobic010G134400--Sobic009G069000 Sobic010G134400--Sobic006G271200 Sobic010G134400--Sobic008G186200 Sobic009G139800 Sobic009G139800 Sobic010G134400--Sobic009G139800 Sobic001G395700 Sobic001G395700 Sobic010G134400--Sobic001G395700 Sobic009G004200 Sobic009G004200 Sobic010G134400--Sobic009G004200 Sobic006G237900 Sobic006G237900 Sobic010G134400--Sobic006G237900 Sobic006G139000 Sobic006G139000 Sobic002G058500--Sobic006G139000 Sobic001G227800 Sobic001G227800 Sobic002G058500--Sobic001G227800 Sobic002G058500--Sobic001G395700 Sobic005G019800 Sobic005G019800 Sobic002G058500--Sobic005G019800 Sobic002G058500--Sobic002G215700 Sobic002G058500--Sobic004G101900 Sobic002G058500--Sobic003G226200 Sobic002G058500--Sobic004G124200 Sobic001G280000 Sobic001G280000 Sobic002G058500--Sobic001G280000 Sobic007G028100 Sobic007G028100 Sobic009G069000--Sobic007G028100 Sobic007G000200 Sobic007G000200 Sobic009G069000--Sobic007G000200 Sobic006G179400 Sobic006G179400 Sobic009G069000--Sobic006G179400 Sobic006G139100 Sobic006G139100 Sobic009G069000--Sobic006G139100 Sobic009G069000--Sobic001G265600 Sobic001G293700 Sobic001G293700 Sobic009G069000--Sobic001G293700 Sobic002G245000 Sobic002G245000 Sobic009G069000--Sobic002G245000 Sobic005G197100 Sobic005G197100 Sobic009G069000--Sobic005G197100 Sobic003G089000 Sobic003G089000 Sobic009G069000--Sobic003G089000 Sobic003G280300--Sobic009G139800 Sobic003G186700 Sobic003G186700 Sobic003G280300--Sobic003G186700 Sobic001G103900 Sobic001G103900 Sobic003G280300--Sobic001G103900 Sobic010G002400 Sobic010G002400 Sobic003G280300--Sobic010G002400 Sobic004G173600 Sobic004G173600 Sobic003G280300--Sobic004G173600 Sobic010G080200 Sobic010G080200 Sobic003G280300--Sobic010G080200 Sobic006G114400 Sobic006G114400 Sobic003G280300--Sobic006G114400 Sobic001G010700 Sobic001G010700 Sobic003G280300--Sobic001G010700 Sobic003G280300--Sobic001G265600 Sobic005G079900--Sobic004G101900 Sobic005G079900--Sobic009G234800 Sobic005G231900 Sobic005G231900 Sobic005G079900--Sobic005G231900 Sobic003G303300 Sobic003G303300 Sobic005G079900--Sobic003G303300 Sobic001G488500 Sobic001G488500 Sobic005G079900--Sobic001G488500 Sobic001G512800 Sobic001G512800 Sobic005G079900--Sobic001G512800 Sobic005G079900--Sobic002G215700 Sobic005G079900--Sobic007G068100 Sobic004G246200 Sobic004G246200 Sobic005G079900--Sobic004G246200 Sobic009G234800--Sobic005G079900 Sobic009G234800--Sobic003G226200 Sobic006G119200 Sobic006G119200 Sobic009G234800--Sobic006G119200 Sobic009G234800--Sobic005G231900 Sobic009G234800--Sobic001G488500 Sobic009G234800--Sobic001G512800 Sobic009G234800--Sobic004G246200 Sobic010G016400 Sobic010G016400 Sobic009G234800--Sobic010G016400 Sobic009G234800--Sobic007G041400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.