Gene annotation
Transcriptome id Sobic.003G167500.1
Synonym Sb03g016720
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
heavy metal-associated domain containing protein, expressed
UniProt C5XKP6
Pfam PF00403
Panther DB PTHR22814 PTHR22814:SF130
NCBI CDD KOG1603; Copper chaperone
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G02600 : Heavy metal transport/detoxification superfamily protein
RAP-DB (Rice) LOC_Os03g60480.1 : heavy metal-associated domain containing protein, expressed
MaizeGDB (Corn) Zm00025a024557
Brachypodium KQK11823
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G242500 Expressed in older stem(PubMedID : 28649278)@WRKY90, expressed K18835: WRKY transcription factor 2
2 Sobic.001G196300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K09755: CYP84A, ferulate-5-hydroxylase
3 Sobic.009G236200 lectin-like receptor kinase 7, putative, expressed -
4 Sobic.002G355200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@BTBN16 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed -
5 Sobic.009G167700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
6 Sobic.001G010400 snRK1-interacting protein 1, putative, expressed -
7 Sobic.001G049200 AMP-binding enzyme, putative, expressed -
8 Sobic.010G161450 - -
9 Sobic.010G016400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxisomal biogenesis factor 11, putative, expressed -
10 Sobic.002G024100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lectin-like receptor kinase, putative, expressed -
11 Sobic.009G241700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed -
12 Sobic.007G125900 protein kinase domain containing protein, expressed -
13 Sobic.010G224200 MYB family transcription factor, putative, expressed -
14 Sobic.007G025700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@amino acid transporter, putative, expressed -
15 Sobic.002G249000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@AT hook motif domain containing protein, expressed -
16 Sobic.003G049300 expressed protein -
17 Sobic.005G016800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@CRP11 - Cysteine-rich family protein precursor, expressed -
18 Sobic.002G294200 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
19 Sobic.007G098400 tyrosine protein kinase domain containing protein, putative, expressed -
20 Sobic.009G111600 expressed protein -


Gene co-expression network
sample Sobic003G167500 Sobic003G167500 Sobic002G242500 Sobic002G242500 Sobic003G167500--Sobic002G242500 Sobic001G196300 Sobic001G196300 Sobic003G167500--Sobic001G196300 Sobic009G236200 Sobic009G236200 Sobic003G167500--Sobic009G236200 Sobic002G355200 Sobic002G355200 Sobic003G167500--Sobic002G355200 Sobic009G167700 Sobic009G167700 Sobic003G167500--Sobic009G167700 Sobic001G010400 Sobic001G010400 Sobic003G167500--Sobic001G010400 Sobic001G049200 Sobic001G049200 Sobic003G167500--Sobic001G049200 Sobic010G161450 Sobic010G161450 Sobic003G167500--Sobic010G161450 Sobic010G016400 Sobic010G016400 Sobic003G167500--Sobic010G016400 Sobic002G294200 Sobic002G294200 Sobic002G242500--Sobic002G294200 Sobic007G098400 Sobic007G098400 Sobic002G242500--Sobic007G098400 Sobic004G145200 Sobic004G145200 Sobic002G242500--Sobic004G145200 Sobic003G049300 Sobic003G049300 Sobic002G242500--Sobic003G049300 Sobic002G242500--Sobic001G049200 Sobic002G242500--Sobic003G167500 Sobic007G221100 Sobic007G221100 Sobic002G242500--Sobic007G221100 Sobic001G403700 Sobic001G403700 Sobic002G242500--Sobic001G403700 Sobic005G211400 Sobic005G211400 Sobic002G242500--Sobic005G211400 Sobic001G196300--Sobic003G167500 Sobic001G196300--Sobic002G242500 Sobic001G196300--Sobic001G010400 Sobic002G153500 Sobic002G153500 Sobic001G196300--Sobic002G153500 Sobic009G111600 Sobic009G111600 Sobic001G196300--Sobic009G111600 Sobic002G196100 Sobic002G196100 Sobic001G196300--Sobic002G196100 Sobic002G249000 Sobic002G249000 Sobic001G196300--Sobic002G249000 Sobic004G284500 Sobic004G284500 Sobic001G196300--Sobic004G284500 Sobic009G241700 Sobic009G241700 Sobic001G196300--Sobic009G241700 Sobic001G151800 Sobic001G151800 Sobic009G236200--Sobic001G151800 Sobic007G125900 Sobic007G125900 Sobic009G236200--Sobic007G125900 Sobic009G236200--Sobic002G355200 Sobic005G016800 Sobic005G016800 Sobic009G236200--Sobic005G016800 Sobic002G381300 Sobic002G381300 Sobic009G236200--Sobic002G381300 Sobic004G236600 Sobic004G236600 Sobic009G236200--Sobic004G236600 Sobic009G236200--Sobic009G167700 Sobic004G102400 Sobic004G102400 Sobic009G236200--Sobic004G102400 Sobic005G215900 Sobic005G215900 Sobic009G236200--Sobic005G215900 Sobic002G355200--Sobic001G151800 Sobic008G144500 Sobic008G144500 Sobic002G355200--Sobic008G144500 Sobic002G355200--Sobic009G236200 Sobic002G355200--Sobic007G125900 Sobic004G236550 Sobic004G236550 Sobic002G355200--Sobic004G236550 Sobic002G355200--Sobic005G016800 Sobic009G236300 Sobic009G236300 Sobic002G355200--Sobic009G236300 Sobic002G355200--Sobic010G016400 Sobic006G119200 Sobic006G119200 Sobic002G355200--Sobic006G119200 Sobic002G244100 Sobic002G244100 Sobic009G167700--Sobic002G244100 Sobic004G341200 Sobic004G341200 Sobic009G167700--Sobic004G341200 Sobic009G167700--Sobic004G102400 Sobic001G386400 Sobic001G386400 Sobic009G167700--Sobic001G386400 Sobic009G167700--Sobic010G016400 Sobic001G089800 Sobic001G089800 Sobic009G167700--Sobic001G089800 Sobic003G354400 Sobic003G354400 Sobic009G167700--Sobic003G354400 Sobic001G132000 Sobic001G132000 Sobic009G167700--Sobic001G132000 Sobic009G167700--Sobic006G119200 Sobic001G010400--Sobic002G249000 Sobic007G148800 Sobic007G148800 Sobic001G010400--Sobic007G148800 Sobic004G185900 Sobic004G185900 Sobic001G010400--Sobic004G185900 Sobic002G113800 Sobic002G113800 Sobic001G010400--Sobic002G113800 Sobic001G393800 Sobic001G393800 Sobic001G010400--Sobic001G393800 Sobic002G258100 Sobic002G258100 Sobic001G010400--Sobic002G258100 Sobic002G180600 Sobic002G180600 Sobic001G010400--Sobic002G180600 Sobic008G107500 Sobic008G107500 Sobic001G010400--Sobic008G107500 Sobic001G010400--Sobic010G016400 Sobic009G179200 Sobic009G179200 Sobic001G049200--Sobic009G179200 Sobic002G114800 Sobic002G114800 Sobic001G049200--Sobic002G114800 Sobic001G049200--Sobic010G161450 Sobic001G049200--Sobic002G242500 Sobic001G049200--Sobic007G221100 Sobic001G049200--Sobic002G294200 Sobic004G132300 Sobic004G132300 Sobic001G049200--Sobic004G132300 Sobic006G176600 Sobic006G176600 Sobic001G049200--Sobic006G176600 Sobic001G049200--Sobic007G098400 Sobic010G220600 Sobic010G220600 Sobic010G161450--Sobic010G220600 Sobic010G161450--Sobic001G049200 Sobic010G161450--Sobic001G386400 Sobic006G064800 Sobic006G064800 Sobic010G161450--Sobic006G064800 Sobic003G273700 Sobic003G273700 Sobic010G161450--Sobic003G273700 Sobic010G161450--Sobic002G242500 Sobic007G136100 Sobic007G136100 Sobic010G161450--Sobic007G136100 Sobic010G161450--Sobic003G167500 Sobic010G161450--Sobic007G221100 Sobic005G139400 Sobic005G139400 Sobic010G016400--Sobic005G139400 Sobic010G016400--Sobic009G167700 Sobic004G347300 Sobic004G347300 Sobic010G016400--Sobic004G347300 Sobic010G016400--Sobic006G119200 Sobic010G016400--Sobic007G148800 Sobic006G217700 Sobic006G217700 Sobic010G016400--Sobic006G217700 Sobic010G016400--Sobic001G010400 Sobic010G016400--Sobic004G102400 Sobic009G172500 Sobic009G172500 Sobic010G016400--Sobic009G172500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.