Gene annotation
Transcriptome id Sobic.003G049300.1
Synonym Sb03g004280
Functional annotation expressed protein
UniProt C5XND7
Pfam PF15697
Panther DB PTHR33730 PTHR33730:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G15400 : -
RAP-DB (Rice) LOC_Os01g07890.1 : expressed protein
MaizeGDB (Corn) Zm00025a023228
Brachypodium KQK02944
Barley HORVU3Hr1G024200.1
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G242500 Expressed in older stem(PubMedID : 28649278)@WRKY90, expressed K18835: WRKY transcription factor 2
2 Sobic.004G145200 membrane attack complex component/perforin/complement C9, putative, expressed -
3 Sobic.010G225100 DUF640 domain containing protein, putative, expressed -
4 Sobic.006G076201 - -
5 Sobic.002G210901 - -
6 Sobic.009G149400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@aminotransferase, classes I and II, domain containing protein, expressed K15849: PAT, bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase
7 Sobic.010G228000 Protein kinase domain containing protein, expressed -
8 Sobic.009G155200 ZOS5-08 - C2H2 zinc finger protein, expressed -
9 Sobic.010G236500 LTPL85 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
10 Sobic.004G333900 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
11 Sobic.005G231700 ZOS7-01 - C2H2 zinc finger protein, expressed -
12 Sobic.007G171000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monodehydroascorbate reductase, putative, expressed K08232: monodehydroascorbate reductase (NADH)
13 Sobic.001G290400 no apical meristem protein, putative, expressed -
14 Sobic.003G167500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@heavy metal-associated domain containing protein, expressed -
15 Sobic.010G138400 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
16 Sobic.002G386800 protein kinase domain containing protein, expressed -
17 Sobic.006G131400 expressed protein -
18 Sobic.001G516600 AMP-binding domain containing protein, expressed K10526: OPC-8:0 CoA ligase 1
19 Sobic.010G268400 eukaryotic aspartyl protease domain containing protein, expressed -
20 Sobic.003G429300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@NADPH quinone oxidoreductase, putative, expressed -


Gene co-expression network
sample Sobic003G049300 Sobic003G049300 Sobic002G242500 Sobic002G242500 Sobic003G049300--Sobic002G242500 Sobic004G145200 Sobic004G145200 Sobic003G049300--Sobic004G145200 Sobic010G225100 Sobic010G225100 Sobic003G049300--Sobic010G225100 Sobic006G076201 Sobic006G076201 Sobic003G049300--Sobic006G076201 Sobic002G210901 Sobic002G210901 Sobic003G049300--Sobic002G210901 Sobic009G149400 Sobic009G149400 Sobic003G049300--Sobic009G149400 Sobic010G228000 Sobic010G228000 Sobic003G049300--Sobic010G228000 Sobic009G155200 Sobic009G155200 Sobic003G049300--Sobic009G155200 Sobic010G236500 Sobic010G236500 Sobic003G049300--Sobic010G236500 Sobic002G294200 Sobic002G294200 Sobic002G242500--Sobic002G294200 Sobic007G098400 Sobic007G098400 Sobic002G242500--Sobic007G098400 Sobic002G242500--Sobic004G145200 Sobic002G242500--Sobic003G049300 Sobic001G049200 Sobic001G049200 Sobic002G242500--Sobic001G049200 Sobic003G167500 Sobic003G167500 Sobic002G242500--Sobic003G167500 Sobic007G221100 Sobic007G221100 Sobic002G242500--Sobic007G221100 Sobic001G403700 Sobic001G403700 Sobic002G242500--Sobic001G403700 Sobic005G211400 Sobic005G211400 Sobic002G242500--Sobic005G211400 Sobic004G145200--Sobic010G228000 Sobic008G016900 Sobic008G016900 Sobic004G145200--Sobic008G016900 Sobic007G188100 Sobic007G188100 Sobic004G145200--Sobic007G188100 Sobic004G145200--Sobic006G076201 Sobic010G062800 Sobic010G062800 Sobic004G145200--Sobic010G062800 Sobic002G362900 Sobic002G362900 Sobic004G145200--Sobic002G362900 Sobic001G012800 Sobic001G012800 Sobic004G145200--Sobic001G012800 Sobic004G145200--Sobic002G242500 Sobic002G118600 Sobic002G118600 Sobic004G145200--Sobic002G118600 Sobic004G333900 Sobic004G333900 Sobic010G225100--Sobic004G333900 Sobic006G131400 Sobic006G131400 Sobic010G225100--Sobic006G131400 Sobic006G179500 Sobic006G179500 Sobic010G225100--Sobic006G179500 Sobic002G359300 Sobic002G359300 Sobic010G225100--Sobic002G359300 Sobic003G300800 Sobic003G300800 Sobic010G225100--Sobic003G300800 Sobic002G272900 Sobic002G272900 Sobic010G225100--Sobic002G272900 Sobic005G103300 Sobic005G103300 Sobic010G225100--Sobic005G103300 Sobic001G516600 Sobic001G516600 Sobic010G225100--Sobic001G516600 Sobic002G294700 Sobic002G294700 Sobic010G225100--Sobic002G294700 Sobic006G087900 Sobic006G087900 Sobic006G076201--Sobic006G087900 Sobic006G076201--Sobic004G145200 Sobic002G325900 Sobic002G325900 Sobic006G076201--Sobic002G325900 Sobic006G076201--Sobic010G236500 Sobic005G195600 Sobic005G195600 Sobic006G076201--Sobic005G195600 Sobic006G191100 Sobic006G191100 Sobic006G076201--Sobic006G191100 Sobic003G016600 Sobic003G016600 Sobic006G076201--Sobic003G016600 Sobic006G076201--Sobic002G242500 Sobic006G076201--Sobic002G362900 Sobic002G210901--Sobic003G049300 Sobic002G210901--Sobic009G155200 Sobic007G025700 Sobic007G025700 Sobic002G210901--Sobic007G025700 Sobic001G054400 Sobic001G054400 Sobic002G210901--Sobic001G054400 Sobic009G177800 Sobic009G177800 Sobic002G210901--Sobic009G177800 Sobic008G111100 Sobic008G111100 Sobic002G210901--Sobic008G111100 Sobic007G171000 Sobic007G171000 Sobic002G210901--Sobic007G171000 Sobic002G224100 Sobic002G224100 Sobic002G210901--Sobic002G224100 Sobic004G307000 Sobic004G307000 Sobic002G210901--Sobic004G307000 Sobic002G187500 Sobic002G187500 Sobic009G149400--Sobic002G187500 Sobic001G281400 Sobic001G281400 Sobic009G149400--Sobic001G281400 Sobic003G285800 Sobic003G285800 Sobic009G149400--Sobic003G285800 Sobic002G267500 Sobic002G267500 Sobic009G149400--Sobic002G267500 Sobic004G272800 Sobic004G272800 Sobic009G149400--Sobic004G272800 Sobic010G023800 Sobic010G023800 Sobic009G149400--Sobic010G023800 Sobic001G433700 Sobic001G433700 Sobic009G149400--Sobic001G433700 Sobic004G284500 Sobic004G284500 Sobic009G149400--Sobic004G284500 Sobic009G149400--Sobic007G171000 Sobic002G374100 Sobic002G374100 Sobic010G228000--Sobic002G374100 Sobic010G228000--Sobic002G118600 Sobic010G228000--Sobic007G188100 Sobic010G228000--Sobic002G294700 Sobic002G330300 Sobic002G330300 Sobic010G228000--Sobic002G330300 Sobic004G280800 Sobic004G280800 Sobic010G228000--Sobic004G280800 Sobic010G246000 Sobic010G246000 Sobic010G228000--Sobic010G246000 Sobic002G379400 Sobic002G379400 Sobic010G228000--Sobic002G379400 Sobic001G290400 Sobic001G290400 Sobic010G228000--Sobic001G290400 Sobic009G155200--Sobic007G171000 Sobic001G119000 Sobic001G119000 Sobic009G155200--Sobic001G119000 Sobic009G155200--Sobic001G054400 Sobic009G155200--Sobic002G359300 Sobic009G155200--Sobic008G111100 Sobic009G155200--Sobic009G177800 Sobic009G155200--Sobic005G103300 Sobic009G036700 Sobic009G036700 Sobic009G155200--Sobic009G036700 Sobic001G040200 Sobic001G040200 Sobic009G155200--Sobic001G040200 Sobic010G236500--Sobic006G076201 Sobic010G236500--Sobic004G145200 Sobic003G095400 Sobic003G095400 Sobic010G236500--Sobic003G095400 Sobic003G294400 Sobic003G294400 Sobic010G236500--Sobic003G294400 Sobic010G236500--Sobic001G012800 Sobic006G064800 Sobic006G064800 Sobic010G236500--Sobic006G064800 Sobic001G409900 Sobic001G409900 Sobic010G236500--Sobic001G409900 Sobic010G236500--Sobic006G087900 Sobic009G241700 Sobic009G241700 Sobic010G236500--Sobic009G241700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.