Gene annotation
Transcriptome id Sobic.001G148900.2
Synonym Sb01g012960, ATCIMS, ATMS1, ATMETS
Functional annotation 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative, expressed
UniProt A0A1B6QJ05 , Q8W0Q7
Pfam PF08267 PF01717
Panther DB PTHR30519 PTHR30519:SF0
NCBI CDD -
KEGG Orthology K00549; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Gene Ontology GO:0008652; cellular amino acid biosynthetic process GO:0008270zinc ion binding GO:00038715-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity GO:0009086methionine biosynthetic process


Orthologs (automatic annotation)
TAIR AT5G17920 : Cobalamin-independent synthase family protein
RAP-DB (Rice) LOC_Os12g42884.3 : 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a007558 , Zm00025a004764 , Zm00025a017208
Brachypodium KQJ85715 , KQJ85714 , KQJ93961 , KQK13905 , KQK13906 , KQK13907
Barley HORVU5Hr1G006780.10 , HORVU4Hr1G002270.3 , HORVU4Hr1G002270.2 , HORVU4Hr1G002270.1 , HORVU4Hr1G002270.7 , HORVU4Hr1G002270.6 , HORVU4Hr1G002270.5 , HORVU4Hr1G002270.4 , HORVU5Hr1G006780.6 , HORVU5Hr1G006780.7 , HORVU5Hr1G006780.4 , HORVU5Hr1G006780.5 , HORVU5Hr1G006780.2 , HORVU5Hr1G006780.3 , HORVU5Hr1G006780.1 , HORVU5Hr1G006780.8 , HORVU5Hr1G006780.9
Wheat TraesCS4B02G014700 , TraesCS4B02G014700 , TraesCS5B02G022800 , TraesCS5B02G022800 , TraesCS5B02G022800 , TraesCS5B02G022800 , TraesCS5B02G022800 , TraesCS4D02G012900 , TraesCS4D02G012900 , TraesCS4A02G298700 , TraesCS5D02G031300 , TraesCS5D02G031300 , TraesCS5A02G024900 , TraesCS5A02G024900 , TraesCS5A02G024900
Populus -


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cDNA sequences
Sobic.001G148900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G132700 ATP-grasp domain containing protein, expressed K01648: ATP citrate (pro-S)-lyase
2 Sobic.005G112800 erythronate-4-phosphate dehydrogenase, putative, expressed K01251: E3.3.1.1, adenosylhomocysteinase
3 Sobic.004G259200 mitochondrial carrier protein, putative, expressed K05863: SLC25A4S, solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31
4 Sobic.001G040100 methylenetetrahydrofolate reductase, putative, expressed K00297: metF, methylenetetrahydrofolate reductase (NADPH)
5 Sobic.001G418900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.004G310300 phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3
7 Sobic.003G443300 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
8 Sobic.004G051700 OTU-like cysteine protease family protein, putative, expressed K13719: OTU1, ubiquitin thioesterase OTU1
9 Sobic.002G257300 ribulose-phosphate 3-epimerase, putative, expressed K01783: rpe, ribulose-phosphate 3-epimerase
10 Sobic.002G356400 NADH dehydrogenase iron-sulfur protein 4, mitochondrial precursor, putative, expressed K03937: NADH dehydrogenase (ubiquinone) Fe-S protein 4
11 Sobic.004G220000 kinase, pfkB family, putative, expressed K00856: E2.7.1.20, adenosine kinase
12 Sobic.004G170400 ubiquinol-cytochrome C reductase hinge protein, putative, expressed K00416: QCR6, ubiquinol-cytochrome c reductase subunit 6
13 Sobic.001G350600 cytochrome c oxidase subunit, putative, expressed K02267: cytochrome c oxidase subunit 6b
14 Sobic.001G465800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
15 Sobic.003G363800 L1P family of ribosomal proteins domain containing protein, expressed K02865: RP-L10Ae, large subunit ribosomal protein L10Ae
16 Sobic.001G418100 NAD dependent epimerase/dehydratase family domain containing protein, expressed K08678: UXS1, UDP-glucuronate decarboxylase
17 Sobic.006G216600 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
18 Sobic.001G533500 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17777: mitochondrial import inner membrane translocase subunit TIM9
19 Sobic.009G220100 exostosin family domain containing protein, expressed -
20 Sobic.004G211833 - K02267: cytochrome c oxidase subunit 6b


Gene co-expression network
sample Sobic001G148900 Sobic001G148900 Sobic008G132700 Sobic008G132700 Sobic001G148900--Sobic008G132700 Sobic005G112800 Sobic005G112800 Sobic001G148900--Sobic005G112800 Sobic004G259200 Sobic004G259200 Sobic001G148900--Sobic004G259200 Sobic001G040100 Sobic001G040100 Sobic001G148900--Sobic001G040100 Sobic001G418900 Sobic001G418900 Sobic001G148900--Sobic001G418900 Sobic004G310300 Sobic004G310300 Sobic001G148900--Sobic004G310300 Sobic003G443300 Sobic003G443300 Sobic001G148900--Sobic003G443300 Sobic004G051700 Sobic004G051700 Sobic001G148900--Sobic004G051700 Sobic002G257300 Sobic002G257300 Sobic001G148900--Sobic002G257300 Sobic006G216600 Sobic006G216600 Sobic008G132700--Sobic006G216600 Sobic002G406500 Sobic002G406500 Sobic008G132700--Sobic002G406500 Sobic001G483100 Sobic001G483100 Sobic008G132700--Sobic001G483100 Sobic001G085400 Sobic001G085400 Sobic008G132700--Sobic001G085400 Sobic008G132700--Sobic001G418900 Sobic006G138100 Sobic006G138100 Sobic008G132700--Sobic006G138100 Sobic002G049300 Sobic002G049300 Sobic008G132700--Sobic002G049300 Sobic001G377800 Sobic001G377800 Sobic008G132700--Sobic001G377800 Sobic006G137100 Sobic006G137100 Sobic008G132700--Sobic006G137100 Sobic001G418100 Sobic001G418100 Sobic005G112800--Sobic001G418100 Sobic001G444800 Sobic001G444800 Sobic005G112800--Sobic001G444800 Sobic005G112800--Sobic001G040100 Sobic006G035900 Sobic006G035900 Sobic005G112800--Sobic006G035900 Sobic003G219800 Sobic003G219800 Sobic005G112800--Sobic003G219800 Sobic010G264300 Sobic010G264300 Sobic005G112800--Sobic010G264300 Sobic002G304900 Sobic002G304900 Sobic005G112800--Sobic002G304900 Sobic005G112800--Sobic003G443300 Sobic001G057300 Sobic001G057300 Sobic005G112800--Sobic001G057300 Sobic003G209000 Sobic003G209000 Sobic004G259200--Sobic003G209000 Sobic004G170400 Sobic004G170400 Sobic004G259200--Sobic004G170400 Sobic001G404800 Sobic001G404800 Sobic004G259200--Sobic001G404800 Sobic001G465800 Sobic001G465800 Sobic004G259200--Sobic001G465800 Sobic001G350600 Sobic001G350600 Sobic004G259200--Sobic001G350600 Sobic002G418400 Sobic002G418400 Sobic004G259200--Sobic002G418400 Sobic004G259200--Sobic004G310300 Sobic009G119900 Sobic009G119900 Sobic004G259200--Sobic009G119900 Sobic002G356400 Sobic002G356400 Sobic004G259200--Sobic002G356400 Sobic001G040100--Sobic005G112800 Sobic001G040100--Sobic003G219800 Sobic001G040100--Sobic002G356400 Sobic001G040100--Sobic003G209000 Sobic003G151600 Sobic003G151600 Sobic001G040100--Sobic003G151600 Sobic003G410500 Sobic003G410500 Sobic001G040100--Sobic003G410500 Sobic006G156000 Sobic006G156000 Sobic001G040100--Sobic006G156000 Sobic001G040100--Sobic002G418400 Sobic001G040100--Sobic002G257300 Sobic007G115100 Sobic007G115100 Sobic001G418900--Sobic007G115100 Sobic001G418900--Sobic003G443300 Sobic004G138800 Sobic004G138800 Sobic001G418900--Sobic004G138800 Sobic001G418900--Sobic004G310300 Sobic001G418900--Sobic002G257300 Sobic001G418900--Sobic009G119900 Sobic003G155400 Sobic003G155400 Sobic001G418900--Sobic003G155400 Sobic005G188100 Sobic005G188100 Sobic001G418900--Sobic005G188100 Sobic005G110800 Sobic005G110800 Sobic001G418900--Sobic005G110800 Sobic004G310300--Sobic009G119900 Sobic004G310300--Sobic004G259200 Sobic007G051000 Sobic007G051000 Sobic004G310300--Sobic007G051000 Sobic001G018500 Sobic001G018500 Sobic004G310300--Sobic001G018500 Sobic010G204500 Sobic010G204500 Sobic004G310300--Sobic010G204500 Sobic004G310300--Sobic003G155400 Sobic004G066800 Sobic004G066800 Sobic004G310300--Sobic004G066800 Sobic001G513500 Sobic001G513500 Sobic004G310300--Sobic001G513500 Sobic004G310300--Sobic005G188100 Sobic001G304400 Sobic001G304400 Sobic003G443300--Sobic001G304400 Sobic003G443300--Sobic001G418900 Sobic003G443300--Sobic001G483100 Sobic003G443300--Sobic001G085400 Sobic003G443300--Sobic006G216600 Sobic003G443300--Sobic006G156000 Sobic009G212200 Sobic009G212200 Sobic003G443300--Sobic009G212200 Sobic003G249700 Sobic003G249700 Sobic003G443300--Sobic003G249700 Sobic003G443300--Sobic003G219800 Sobic010G012500 Sobic010G012500 Sobic004G051700--Sobic010G012500 Sobic002G190900 Sobic002G190900 Sobic004G051700--Sobic002G190900 Sobic001G048832 Sobic001G048832 Sobic004G051700--Sobic001G048832 Sobic004G051700--Sobic007G051000 Sobic004G211833 Sobic004G211833 Sobic004G051700--Sobic004G211833 Sobic002G398901 Sobic002G398901 Sobic004G051700--Sobic002G398901 Sobic004G051700--Sobic002G257300 Sobic002G175100 Sobic002G175100 Sobic004G051700--Sobic002G175100 Sobic004G051700--Sobic010G204500 Sobic002G257300--Sobic002G398901 Sobic002G257300--Sobic001G418900 Sobic002G257300--Sobic002G190900 Sobic002G257300--Sobic003G209000 Sobic002G257300--Sobic004G051700 Sobic010G239500 Sobic010G239500 Sobic002G257300--Sobic010G239500 Sobic002G257300--Sobic002G418400 Sobic002G257300--Sobic009G119900 Sobic003G363800 Sobic003G363800 Sobic002G257300--Sobic003G363800
Octagon: transcription factors


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