Gene annotation
Transcriptome id Sobic.002G236400.1
Synonym Sb02g027470
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
auxin-independent growth promoter protein, putative, expressed
UniProt C5X344
Pfam PF10250
Panther DB PTHR31741 PTHR31741:SF21
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G15740 : O-fucosyltransferase family protein
RAP-DB (Rice) LOC_Os09g29940.1 : auxin-independent growth promoter protein, putative, expressed
MaizeGDB (Corn) Zm00025a047368
Brachypodium PNT64785 , KQJ90636
Barley HORVU4Hr1G029940.8 , HORVU4Hr1G029940.6 , HORVU4Hr1G029940.3 , HORVU5Hr1G070810.14 , HORVU5Hr1G070810.13 , HORVU5Hr1G070810.12 , HORVU5Hr1G070810.11 , HORVU5Hr1G070810.10 , HORVU5Hr1G070810.9 , HORVU5Hr1G070810.8 , HORVU5Hr1G070810.7 , HORVU5Hr1G070810.6 , HORVU5Hr1G070810.5 , HORVU5Hr1G070810.4 , HORVU5Hr1G070810.3 , HORVU5Hr1G070810.2 , HORVU5Hr1G070810.1
Wheat TraesCS5A02G251600 , TraesCS5A02G251600 , TraesCS5A02G251600 , TraesCS5B02G249700 , TraesCS5B02G249700 , TraesCS5D02G259500
Populus -


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cDNA sequences
Sobic.002G236400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G106900 "C3 PTPC, root-inducible gene"(PubMedID : 2308851)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoenolphyruvate carboxylase(PubMedID : 26904072)@phosphoenolpyruvate carboxylase, putative, expressed K01595: phosphoenolpyruvate carboxylase
2 Sobic.009G235600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
3 Sobic.004G347300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@thioredoxin, putative, expressed -
4 Sobic.009G210300 similar to Calcium sensing protein(PubMedID : 29862293)@Cellular calcium signals(PubMedID : 19860013)@calcineurin B, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
5 Sobic.005G139400 SNARE associated Golgi protein, putative, expressed -
6 Sobic.008G113600 glutathione synthetase, chloroplast precursor, putative, expressed K01920: glutathione synthase
7 Sobic.004G198800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@expressed protein K01113: alkaline phosphatase D
8 Sobic.010G203600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
9 Sobic.004G032800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CGMC_MAPKCMGC_2.7 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
10 Sobic.001G188900 expressed protein -
11 Sobic.005G058900 zinc finger, C3HC4 type domain containing protein, expressed -
12 Sobic.006G119200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@copper methylamine oxidase precursor, putative, expressed K00276: AOC3, AOC2, primary-amine oxidase
13 Sobic.003G377000 powdery mildew resistant protein 5, putative, expressed -
14 Sobic.009G241000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@3 Ketoacyl CoA synthetase 11 KCS11 (At)(PubMedID : 27208977)@3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
15 Sobic.008G102600 expressed protein -
16 Sobic.002G431000 transporter, putative, expressed -
17 Sobic.010G064600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@LIM domain-containing protein, putative, expressed -
18 Sobic.K043400 dnaJ homolog subfamily C member, putative, expressed K09523: DnaJ homolog subfamily C member 3
19 Sobic.007G179900 6-phosphogluconolactonase, putative, expressed K01057: PGLS, pgl, 6-phosphogluconolactonase
20 Sobic.004G000100 uridine/cytidine kinase-like 1, putative, expressed K00876: udk, uridine kinase


Gene co-expression network
sample Sobic002G236400 Sobic002G236400 Sobic004G106900 Sobic004G106900 Sobic002G236400--Sobic004G106900 Sobic009G235600 Sobic009G235600 Sobic002G236400--Sobic009G235600 Sobic004G347300 Sobic004G347300 Sobic002G236400--Sobic004G347300 Sobic009G210300 Sobic009G210300 Sobic002G236400--Sobic009G210300 Sobic005G139400 Sobic005G139400 Sobic002G236400--Sobic005G139400 Sobic008G113600 Sobic008G113600 Sobic002G236400--Sobic008G113600 Sobic004G198800 Sobic004G198800 Sobic002G236400--Sobic004G198800 Sobic010G203600 Sobic010G203600 Sobic002G236400--Sobic010G203600 Sobic004G032800 Sobic004G032800 Sobic002G236400--Sobic004G032800 Sobic004G341200 Sobic004G341200 Sobic004G106900--Sobic004G341200 Sobic004G106900--Sobic009G210300 Sobic002G155400 Sobic002G155400 Sobic004G106900--Sobic002G155400 Sobic001G386400 Sobic001G386400 Sobic004G106900--Sobic001G386400 Sobic006G119200 Sobic006G119200 Sobic004G106900--Sobic006G119200 Sobic009G167700 Sobic009G167700 Sobic004G106900--Sobic009G167700 Sobic004G106900--Sobic005G139400 Sobic003G149200 Sobic003G149200 Sobic004G106900--Sobic003G149200 Sobic009G234800 Sobic009G234800 Sobic004G106900--Sobic009G234800 Sobic010G064600 Sobic010G064600 Sobic009G235600--Sobic010G064600 Sobic001G512800 Sobic001G512800 Sobic009G235600--Sobic001G512800 Sobic003G377000 Sobic003G377000 Sobic009G235600--Sobic003G377000 Sobic009G235600--Sobic006G119200 Sobic009G235600--Sobic001G386400 Sobic010G184300 Sobic010G184300 Sobic009G235600--Sobic010G184300 Sobic006G232000 Sobic006G232000 Sobic009G235600--Sobic006G232000 Sobic006G176600 Sobic006G176600 Sobic009G235600--Sobic006G176600 Sobic001G188900 Sobic001G188900 Sobic009G235600--Sobic001G188900 Sobic010G016400 Sobic010G016400 Sobic004G347300--Sobic010G016400 Sobic004G347300--Sobic005G139400 Sobic001G023200 Sobic001G023200 Sobic004G347300--Sobic001G023200 Sobic004G347300--Sobic006G119200 Sobic007G148800 Sobic007G148800 Sobic004G347300--Sobic007G148800 Sobic001G132000 Sobic001G132000 Sobic004G347300--Sobic001G132000 Sobic001G010400 Sobic001G010400 Sobic004G347300--Sobic001G010400 Sobic009G004200 Sobic009G004200 Sobic004G347300--Sobic009G004200 Sobic004G012400 Sobic004G012400 Sobic004G347300--Sobic004G012400 Sobic009G210300--Sobic004G106900 Sobic005G024900 Sobic005G024900 Sobic009G210300--Sobic005G024900 Sobic009G210300--Sobic009G167700 Sobic005G152200 Sobic005G152200 Sobic009G210300--Sobic005G152200 Sobic001G334600 Sobic001G334600 Sobic009G210300--Sobic001G334600 Sobic009G210300--Sobic001G010400 Sobic001G196300 Sobic001G196300 Sobic009G210300--Sobic001G196300 Sobic009G210300--Sobic004G347300 Sobic009G210300--Sobic004G341200 Sobic005G139400--Sobic010G016400 Sobic005G139400--Sobic004G347300 Sobic005G139400--Sobic006G232000 Sobic005G139400--Sobic001G010400 Sobic006G192700 Sobic006G192700 Sobic005G139400--Sobic006G192700 Sobic002G113800 Sobic002G113800 Sobic005G139400--Sobic002G113800 Sobic005G139400--Sobic001G132000 Sobic005G139400--Sobic007G148800 Sobic004G185900 Sobic004G185900 Sobic005G139400--Sobic004G185900 Sobic009G139800 Sobic009G139800 Sobic008G113600--Sobic009G139800 Sobic003G169900 Sobic003G169900 Sobic008G113600--Sobic003G169900 Sobic002G375800 Sobic002G375800 Sobic008G113600--Sobic002G375800 Sobic001G220900 Sobic001G220900 Sobic008G113600--Sobic001G220900 Sobic001G338400 Sobic001G338400 Sobic008G113600--Sobic001G338400 Sobic007G075500 Sobic007G075500 Sobic008G113600--Sobic007G075500 Sobic003G348800 Sobic003G348800 Sobic008G113600--Sobic003G348800 Sobic001G077900 Sobic001G077900 Sobic008G113600--Sobic001G077900 Sobic001G109300 Sobic001G109300 Sobic008G113600--Sobic001G109300 Sobic002G139600 Sobic002G139600 Sobic004G198800--Sobic002G139600 Sobic003G308800 Sobic003G308800 Sobic004G198800--Sobic003G308800 Sobic006G166400 Sobic006G166400 Sobic004G198800--Sobic006G166400 Sobic004G198800--Sobic003G377000 Sobic002G007800 Sobic002G007800 Sobic004G198800--Sobic002G007800 Sobic004G256700 Sobic004G256700 Sobic004G198800--Sobic004G256700 Sobic001G387200 Sobic001G387200 Sobic004G198800--Sobic001G387200 Sobic006G120900 Sobic006G120900 Sobic004G198800--Sobic006G120900 Sobic003G129900 Sobic003G129900 Sobic004G198800--Sobic003G129900 Sobic006G061300 Sobic006G061300 Sobic010G203600--Sobic006G061300 Sobic007G119800 Sobic007G119800 Sobic010G203600--Sobic007G119800 Sobic010G203600--Sobic009G235600 Sobic010G203600--Sobic001G386400 Sobic010G203600--Sobic006G176600 Sobic004G173600 Sobic004G173600 Sobic010G203600--Sobic004G173600 Sobic007G011700 Sobic007G011700 Sobic010G203600--Sobic007G011700 Sobic001G049200 Sobic001G049200 Sobic010G203600--Sobic001G049200 Sobic001G456100 Sobic001G456100 Sobic010G203600--Sobic001G456100 Sobic003G084000 Sobic003G084000 Sobic004G032800--Sobic003G084000 Sobic009G212600 Sobic009G212600 Sobic004G032800--Sobic009G212600 Sobic005G197100 Sobic005G197100 Sobic004G032800--Sobic005G197100 Sobic009G166600 Sobic009G166600 Sobic004G032800--Sobic009G166600 Sobic002G313900 Sobic002G313900 Sobic004G032800--Sobic002G313900 Sobic004G160700 Sobic004G160700 Sobic004G032800--Sobic004G160700 Sobic007G065500 Sobic007G065500 Sobic004G032800--Sobic007G065500 Sobic005G079900 Sobic005G079900 Sobic004G032800--Sobic005G079900 Sobic010G020700 Sobic010G020700 Sobic004G032800--Sobic010G020700
Octagon: transcription factors


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