Gene annotation
Transcriptome id Sobic.006G247100.1
Synonym Sb06g031240, HA2, PMA2, AHA2
Functional annotation plasma membrane ATPase, putative, expressed
UniProt C5Y9I0
Pfam PF00690 PF00702 PF00122
Panther DB PTHR24093 PTHR24093:SF355
NCBI CDD -
KEGG Orthology K01535; PMA1, H+-transporting ATPase
Gene Ontology GO:0000166; nucleotide binding


Orthologs (automatic annotation)
TAIR AT4G30190 : H(+)-ATPase 2
RAP-DB (Rice) LOC_Os04g56160.1 : plasma membrane ATPase, putative, expressed
MaizeGDB (Corn) Zm00025a030928 , Zm00025a057250 , Zm00025a051359 , Zm00025a058079 , Zm00025a042055 , Zm00025a009469
Brachypodium KQJ85071 , KQK20491
Barley HORVU2Hr1G111640.17 , HORVU2Hr1G111640.16 , HORVU2Hr1G111640.9 , HORVU2Hr1G111640.8 , HORVU2Hr1G111640.3 , HORVU2Hr1G111640.2 , HORVU2Hr1G111640.1 , HORVU2Hr1G111640.7 , HORVU2Hr1G111640.6 , HORVU2Hr1G111640.5 , HORVU2Hr1G111640.4 , HORVU2Hr1G111640.19 , HORVU2Hr1G111640.18 , HORVU2Hr1G111640.13 , HORVU2Hr1G111640.12 , HORVU2Hr1G111640.22 , HORVU2Hr1G111640.23 , HORVU2Hr1G111640.20 , HORVU2Hr1G111640.21 , HORVU2Hr1G111640.26 , HORVU2Hr1G111640.24 , HORVU2Hr1G111640.25 , HORVU2Hr1G111640.11 , HORVU2Hr1G111640.10 , HORVU2Hr1G111640.15 , HORVU2Hr1G111640.14
Wheat TraesCS1B02G268800 , TraesCS2D02G503000 , TraesCS1A02G258300 , TraesCS2B02G530500 , TraesCS2B02G530500 , TraesCS2A02G502400 , TraesCS2A02G502400 , TraesCS2A02G502400 , TraesCS2A02G502400 , TraesCS7B02G047600 , TraesCS1D02G257600
Populus PNS93896 , PNT32424 , PNT32423 , PNT32071 , PNS93486


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cDNA sequences
Sobic.006G247100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G089800 nuclear prelamin A recognition factor, putative, expressed -
2 Sobic.003G257100 YT521-B-like family domain containing protein, expressed -
3 Sobic.004G225200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein nitrilase 4 NIT4 (Os)(PubMedID : 27208977)@nitrilase, putative, expressed K13035: beta-cyano-L-alanine hydratase/nitrilase
4 Sobic.004G225100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein nitrilase 4 NIT4 (Os)(PubMedID : 27208977)@Protein nitrilase 4 NIT4 (Os)(PubMedID : 27208977)@nitrilase, putative, expressed K01501: nitrilase
5 Sobic.006G199000 pathogenesis-related Bet v I family protein, putative, expressed -
6 Sobic.002G244100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.001G386400 phospholipid-transporting ATPase, putative, expressed K14802: DRS2, phospholipid-transporting ATPase
8 Sobic.002G352800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lactose permease-related, putative, expressed -
9 Sobic.004G125900 ethylene-responsive protein related, putative, expressed -
10 Sobic.009G193700 transmembrane protein 56, putative, expressed -
11 Sobic.009G167700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
12 Sobic.001G203900 OsGrx_S17 - glutaredoxin subgroup II, expressed -
13 Sobic.009G133500 expressed protein -
14 Sobic.006G104600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.002G087800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@1-aminocyclopropane-1-carboxylate oxidase 2, putative, expressed -
16 Sobic.008G179900 cysteine synthase, putative, expressed K01738: cysteine synthase
17 Sobic.003G317400 Diacylglycerol kinase DGK (Os)(PubMedID : 27208977)@diacylglycerol kinase, putative, expressed K04718: sphingosine kinase
18 Sobic.003G055700 saposin-like type B, region 1 family protein, putative, expressed K12382: PSAP, saposin
19 Sobic.010G107000 phosphatidylinositol-4-phosphate 5-Kinase family protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
20 Sobic.004G341200 Glutathione reductases(PubMedID : 23783412)@glutathione reductase, putative, expressed K00383: GSR, glutathione reductase (NADPH)


Gene co-expression network
sample Sobic006G247100 Sobic006G247100 Sobic001G089800 Sobic001G089800 Sobic006G247100--Sobic001G089800 Sobic003G257100 Sobic003G257100 Sobic006G247100--Sobic003G257100 Sobic004G225200 Sobic004G225200 Sobic006G247100--Sobic004G225200 Sobic004G225100 Sobic004G225100 Sobic006G247100--Sobic004G225100 Sobic006G199000 Sobic006G199000 Sobic006G247100--Sobic006G199000 Sobic002G244100 Sobic002G244100 Sobic006G247100--Sobic002G244100 Sobic001G386400 Sobic001G386400 Sobic006G247100--Sobic001G386400 Sobic002G352800 Sobic002G352800 Sobic006G247100--Sobic002G352800 Sobic004G125900 Sobic004G125900 Sobic006G247100--Sobic004G125900 Sobic001G003000 Sobic001G003000 Sobic001G089800--Sobic001G003000 Sobic004G341200 Sobic004G341200 Sobic001G089800--Sobic004G341200 Sobic009G193700 Sobic009G193700 Sobic001G089800--Sobic009G193700 Sobic006G271200 Sobic006G271200 Sobic001G089800--Sobic006G271200 Sobic009G167700 Sobic009G167700 Sobic001G089800--Sobic009G167700 Sobic001G089800--Sobic002G244100 Sobic004G102400 Sobic004G102400 Sobic001G089800--Sobic004G102400 Sobic010G064600 Sobic010G064600 Sobic001G089800--Sobic010G064600 Sobic003G354400 Sobic003G354400 Sobic001G089800--Sobic003G354400 Sobic009G029600 Sobic009G029600 Sobic003G257100--Sobic009G029600 Sobic003G257100--Sobic006G199000 Sobic008G153400 Sobic008G153400 Sobic003G257100--Sobic008G153400 Sobic003G398100 Sobic003G398100 Sobic003G257100--Sobic003G398100 Sobic010G107000 Sobic010G107000 Sobic003G257100--Sobic010G107000 Sobic003G257100--Sobic002G352800 Sobic009G211400 Sobic009G211400 Sobic003G257100--Sobic009G211400 Sobic006G030700 Sobic006G030700 Sobic003G257100--Sobic006G030700 Sobic002G409500 Sobic002G409500 Sobic003G257100--Sobic002G409500 Sobic004G225200--Sobic004G225100 Sobic001G282600 Sobic001G282600 Sobic004G225200--Sobic001G282600 Sobic002G266000 Sobic002G266000 Sobic004G225200--Sobic002G266000 Sobic004G225200--Sobic006G199000 Sobic004G225200--Sobic003G398100 Sobic006G104600 Sobic006G104600 Sobic004G225200--Sobic006G104600 Sobic004G071200 Sobic004G071200 Sobic004G225200--Sobic004G071200 Sobic003G322700 Sobic003G322700 Sobic004G225200--Sobic003G322700 Sobic005G178100 Sobic005G178100 Sobic004G225200--Sobic005G178100 Sobic004G225100--Sobic004G225200 Sobic004G225100--Sobic002G244100 Sobic001G334600 Sobic001G334600 Sobic004G225100--Sobic001G334600 Sobic004G225100--Sobic009G167700 Sobic003G388251 Sobic003G388251 Sobic004G225100--Sobic003G388251 Sobic004G225100--Sobic005G178100 Sobic004G225100--Sobic003G354400 Sobic001G305800 Sobic001G305800 Sobic004G225100--Sobic001G305800 Sobic002G087800 Sobic002G087800 Sobic004G225100--Sobic002G087800 Sobic006G199000--Sobic008G153400 Sobic006G199000--Sobic003G398100 Sobic006G199000--Sobic003G257100 Sobic003G355600 Sobic003G355600 Sobic006G199000--Sobic003G355600 Sobic001G325200 Sobic001G325200 Sobic006G199000--Sobic001G325200 Sobic001G150600 Sobic001G150600 Sobic006G199000--Sobic001G150600 Sobic001G015500 Sobic001G015500 Sobic006G199000--Sobic001G015500 Sobic006G199000--Sobic001G282600 Sobic006G091700 Sobic006G091700 Sobic006G199000--Sobic006G091700 Sobic002G244100--Sobic009G167700 Sobic002G244100--Sobic001G089800 Sobic008G093000 Sobic008G093000 Sobic002G244100--Sobic008G093000 Sobic002G244100--Sobic004G225100 Sobic002G244100--Sobic003G354400 Sobic002G244100--Sobic010G064600 Sobic004G167400 Sobic004G167400 Sobic002G244100--Sobic004G167400 Sobic002G244100--Sobic001G334600 Sobic009G126900 Sobic009G126900 Sobic002G244100--Sobic009G126900 Sobic006G119200 Sobic006G119200 Sobic001G386400--Sobic006G119200 Sobic001G386400--Sobic009G167700 Sobic009G000200 Sobic009G000200 Sobic001G386400--Sobic009G000200 Sobic003G316300 Sobic003G316300 Sobic001G386400--Sobic003G316300 Sobic002G155400 Sobic002G155400 Sobic001G386400--Sobic002G155400 Sobic010G161450 Sobic010G161450 Sobic001G386400--Sobic010G161450 Sobic004G106900 Sobic004G106900 Sobic001G386400--Sobic004G106900 Sobic002G024100 Sobic002G024100 Sobic001G386400--Sobic002G024100 Sobic001G386400--Sobic004G341200 Sobic002G352800--Sobic003G257100 Sobic006G204900 Sobic006G204900 Sobic002G352800--Sobic006G204900 Sobic003G320700 Sobic003G320700 Sobic002G352800--Sobic003G320700 Sobic002G352800--Sobic009G193700 Sobic002G352800--Sobic009G211400 Sobic002G352800--Sobic009G029600 Sobic002G292100 Sobic002G292100 Sobic002G352800--Sobic002G292100 Sobic002G352800--Sobic010G107000 Sobic002G352800--Sobic006G199000 Sobic001G415300 Sobic001G415300 Sobic004G125900--Sobic001G415300 Sobic002G270500 Sobic002G270500 Sobic004G125900--Sobic002G270500 Sobic004G125900--Sobic009G126900 Sobic004G125900--Sobic006G271200 Sobic003G331400 Sobic003G331400 Sobic004G125900--Sobic003G331400 Sobic004G125900--Sobic009G000200 Sobic001G107600 Sobic001G107600 Sobic004G125900--Sobic001G107600 Sobic002G031100 Sobic002G031100 Sobic004G125900--Sobic002G031100 Sobic006G034000 Sobic006G034000 Sobic004G125900--Sobic006G034000
Octagon: transcription factors


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