Gene annotation
Transcriptome id Sobic.004G125900.1
Synonym Sb04g010670
Functional annotation ethylene-responsive protein related, putative, expressed
UniProt C5Y020
Pfam -
Panther DB PTHR16223 PTHR16223:SF53
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G20100 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os02g17680.1 : ethylene-responsive protein related, putative, expressed
MaizeGDB (Corn) Zm00025a019790
Brachypodium KQJ94391 , KQJ94390 , PNT66333 , PNT66332
Barley HORVU7Hr1G101040.20 , HORVU7Hr1G101040.21 , HORVU7Hr1G101040.9 , HORVU7Hr1G101040.8 , HORVU7Hr1G101040.1 , HORVU7Hr1G101040.3 , HORVU7Hr1G101040.2 , HORVU7Hr1G101040.5 , HORVU7Hr1G101040.4 , HORVU7Hr1G101040.7 , HORVU7Hr1G101040.6 , HORVU7Hr1G101040.19 , HORVU7Hr1G101040.18 , HORVU7Hr1G101040.15 , HORVU7Hr1G101040.14 , HORVU7Hr1G101040.17 , HORVU7Hr1G101040.16 , HORVU7Hr1G101040.11 , HORVU7Hr1G101040.10 , HORVU7Hr1G101040.12
Wheat TraesCS7A02G444700 , TraesCS7B02G343800 , TraesCS7A02G444700
Populus -


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cDNA sequences
Sobic.004G125900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G415300 "domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@ABC transporter, ATP-binding protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
2 Sobic.002G270500 UBX domain-containing protein, putative, expressed -
3 Sobic.009G126900 mitochondrial carrier protein, putative, expressed -
4 Sobic.006G271200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cysteine protease ATG4, putative, expressed K08342: cysteine protease ATG4
5 Sobic.003G331400 expressed protein -
6 Sobic.009G000200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phospholipid-transporting ATPase, putative, expressed K01530: phospholipid-translocating ATPase
7 Sobic.001G107600 - K18328: lariat debranching enzyme
8 Sobic.002G031100 resistance protein LR10, putative, expressed -
9 Sobic.006G034000 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
10 Sobic.001G089800 nuclear prelamin A recognition factor, putative, expressed -
11 Sobic.009G167700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
12 Sobic.005G203800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lipase precursor, putative, expressed -
13 Sobic.004G002100 G-protein alpha subunit, putative, expressed -
14 Sobic.007G004500 phosphatidylinositol-4-phosphate 5-Kinase, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
15 Sobic.007G024700 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
16 Sobic.003G126300 OsRhmbd2 - Putative Rhomboid homologue, expressed -
17 Sobic.003G354400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-coenzyme A oxidase, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
18 Sobic.010G130200 BPI/LBP family protein At3g20270 precursor, putative, expressed K05399: lipopolysaccharide-binding protein
19 Sobic.001G390800 transcription factor HBP-1b, putative, expressed K14431: transcription factor TGA
20 Sobic.002G137400 protein binding protein, putative, expressed -


Gene co-expression network
sample Sobic004G125900 Sobic004G125900 Sobic001G415300 Sobic001G415300 Sobic004G125900--Sobic001G415300 Sobic002G270500 Sobic002G270500 Sobic004G125900--Sobic002G270500 Sobic009G126900 Sobic009G126900 Sobic004G125900--Sobic009G126900 Sobic006G271200 Sobic006G271200 Sobic004G125900--Sobic006G271200 Sobic003G331400 Sobic003G331400 Sobic004G125900--Sobic003G331400 Sobic009G000200 Sobic009G000200 Sobic004G125900--Sobic009G000200 Sobic001G107600 Sobic001G107600 Sobic004G125900--Sobic001G107600 Sobic002G031100 Sobic002G031100 Sobic004G125900--Sobic002G031100 Sobic006G034000 Sobic006G034000 Sobic004G125900--Sobic006G034000 Sobic002G137400 Sobic002G137400 Sobic001G415300--Sobic002G137400 Sobic004G004300 Sobic004G004300 Sobic001G415300--Sobic004G004300 Sobic001G281100 Sobic001G281100 Sobic001G415300--Sobic001G281100 Sobic001G085300 Sobic001G085300 Sobic001G415300--Sobic001G085300 Sobic003G337300 Sobic003G337300 Sobic001G415300--Sobic003G337300 Sobic006G126100 Sobic006G126100 Sobic001G415300--Sobic006G126100 Sobic001G534800 Sobic001G534800 Sobic001G415300--Sobic001G534800 Sobic004G002100 Sobic004G002100 Sobic001G415300--Sobic004G002100 Sobic001G457900 Sobic001G457900 Sobic001G415300--Sobic001G457900 Sobic007G024700 Sobic007G024700 Sobic002G270500--Sobic007G024700 Sobic001G207400 Sobic001G207400 Sobic002G270500--Sobic001G207400 Sobic004G355000 Sobic004G355000 Sobic002G270500--Sobic004G355000 Sobic005G157000 Sobic005G157000 Sobic002G270500--Sobic005G157000 Sobic002G430000 Sobic002G430000 Sobic002G270500--Sobic002G430000 Sobic002G270500--Sobic009G126900 Sobic009G094300 Sobic009G094300 Sobic002G270500--Sobic009G094300 Sobic004G113400 Sobic004G113400 Sobic002G270500--Sobic004G113400 Sobic004G269200 Sobic004G269200 Sobic002G270500--Sobic004G269200 Sobic010G043400 Sobic010G043400 Sobic009G126900--Sobic010G043400 Sobic009G126900--Sobic002G270500 Sobic002G009700 Sobic002G009700 Sobic009G126900--Sobic002G009700 Sobic009G126900--Sobic006G271200 Sobic001G003000 Sobic001G003000 Sobic009G126900--Sobic001G003000 Sobic004G124200 Sobic004G124200 Sobic009G126900--Sobic004G124200 Sobic003G005600 Sobic003G005600 Sobic009G126900--Sobic003G005600 Sobic003G329400 Sobic003G329400 Sobic009G126900--Sobic003G329400 Sobic004G101900 Sobic004G101900 Sobic009G126900--Sobic004G101900 Sobic006G271200--Sobic001G003000 Sobic006G237900 Sobic006G237900 Sobic006G271200--Sobic006G237900 Sobic006G271200--Sobic009G126900 Sobic010G130200 Sobic010G130200 Sobic006G271200--Sobic010G130200 Sobic001G089800 Sobic001G089800 Sobic006G271200--Sobic001G089800 Sobic006G271200--Sobic010G043400 Sobic004G351300 Sobic004G351300 Sobic006G271200--Sobic004G351300 Sobic001G436900 Sobic001G436900 Sobic006G271200--Sobic001G436900 Sobic010G072800 Sobic010G072800 Sobic006G271200--Sobic010G072800 Sobic004G344901 Sobic004G344901 Sobic003G331400--Sobic004G344901 Sobic003G331400--Sobic002G137400 Sobic003G331400--Sobic001G415300 Sobic004G358400 Sobic004G358400 Sobic003G331400--Sobic004G358400 Sobic003G331400--Sobic004G004300 Sobic003G331400--Sobic002G031100 Sobic005G026200 Sobic005G026200 Sobic003G331400--Sobic005G026200 Sobic010G004100 Sobic010G004100 Sobic003G331400--Sobic010G004100 Sobic001G163400 Sobic001G163400 Sobic003G331400--Sobic001G163400 Sobic009G079300 Sobic009G079300 Sobic009G000200--Sobic009G079300 Sobic003G316300 Sobic003G316300 Sobic009G000200--Sobic003G316300 Sobic001G386400 Sobic001G386400 Sobic009G000200--Sobic001G386400 Sobic001G298500 Sobic001G298500 Sobic009G000200--Sobic001G298500 Sobic006G002600 Sobic006G002600 Sobic009G000200--Sobic006G002600 Sobic008G189200 Sobic008G189200 Sobic009G000200--Sobic008G189200 Sobic009G000200--Sobic004G125900 Sobic001G180900 Sobic001G180900 Sobic009G000200--Sobic001G180900 Sobic006G149600 Sobic006G149600 Sobic009G000200--Sobic006G149600 Sobic001G050200 Sobic001G050200 Sobic001G107600--Sobic001G050200 Sobic010G228400 Sobic010G228400 Sobic001G107600--Sobic010G228400 Sobic001G390800 Sobic001G390800 Sobic001G107600--Sobic001G390800 Sobic003G365300 Sobic003G365300 Sobic001G107600--Sobic003G365300 Sobic006G115600 Sobic006G115600 Sobic001G107600--Sobic006G115600 Sobic004G264400 Sobic004G264400 Sobic001G107600--Sobic004G264400 Sobic002G427050 Sobic002G427050 Sobic001G107600--Sobic002G427050 Sobic003G372500 Sobic003G372500 Sobic001G107600--Sobic003G372500 Sobic010G227100 Sobic010G227100 Sobic001G107600--Sobic010G227100 Sobic002G031100--Sobic004G002100 Sobic002G031100--Sobic002G137400 Sobic002G031100--Sobic001G415300 Sobic002G031100--Sobic003G331400 Sobic004G261600 Sobic004G261600 Sobic002G031100--Sobic004G261600 Sobic010G093100 Sobic010G093100 Sobic002G031100--Sobic010G093100 Sobic001G127200 Sobic001G127200 Sobic002G031100--Sobic001G127200 Sobic002G031100--Sobic001G281100 Sobic002G031100--Sobic004G344901 Sobic003G312200 Sobic003G312200 Sobic006G034000--Sobic003G312200 Sobic001G323000 Sobic001G323000 Sobic006G034000--Sobic001G323000 Sobic003G436300 Sobic003G436300 Sobic006G034000--Sobic003G436300 Sobic006G148200 Sobic006G148200 Sobic006G034000--Sobic006G148200 Sobic006G034000--Sobic001G180900 Sobic010G130000 Sobic010G130000 Sobic006G034000--Sobic010G130000 Sobic001G091300 Sobic001G091300 Sobic006G034000--Sobic001G091300 Sobic008G110600 Sobic008G110600 Sobic006G034000--Sobic008G110600 Sobic009G228700 Sobic009G228700 Sobic006G034000--Sobic009G228700
Octagon: transcription factors


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