Gene annotation
Transcriptome id Sobic.009G179400.1
Synonym Sb09g023980
Functional annotation expressed protein
UniProt C5Z076
Pfam -
Panther DB PTHR33870 PTHR33870:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G17910 : -
RAP-DB (Rice) LOC_Os05g41150.1 : expressed protein
MaizeGDB (Corn) Zm00025a044066
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.009G179400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G146000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
2 Sobic.003G273000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@hydrolase, putative, expressed K14664: IAA-amino acid hydrolase
3 Sobic.009G179500 expressed protein -
4 Sobic.001G508466 - -
5 Sobic.009G063900 expressed protein -
6 Sobic.001G405500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate decarboxylase isozyme 2, putative, expressed K01568: PDC, pyruvate decarboxylase
7 Sobic.001G149800 2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
8 Sobic.003G148600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
9 Sobic.003G377100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-desaturase, chloroplast precursor, putative, expressed K03921: FAB2, SSI2, acyl-[acyl-carrier-protein] desaturase
10 Sobic.003G353300 expressed protein -
11 Sobic.003G146400 anther-specific protein SF18 precursor, putative, expressed -
12 Sobic.010G198600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.006G267200 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
14 Sobic.003G382800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
15 Sobic.007G026600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@kelch repeat protein, putative, expressed -
16 Sobic.003G355300 membrane associated DUF588 domain containing protein, putative, expressed -
17 Sobic.004G336500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@OsIAA9 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
18 Sobic.004G306300 expressed protein -
19 Sobic.001G138600 VQ domain containing protein, putative, expressed -
20 Sobic.003G086600 "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic009G179400 Sobic009G179400 Sobic004G146000 Sobic004G146000 Sobic009G179400--Sobic004G146000 Sobic003G273000 Sobic003G273000 Sobic009G179400--Sobic003G273000 Sobic009G179500 Sobic009G179500 Sobic009G179400--Sobic009G179500 Sobic001G508466 Sobic001G508466 Sobic009G179400--Sobic001G508466 Sobic009G063900 Sobic009G063900 Sobic009G179400--Sobic009G063900 Sobic001G405500 Sobic001G405500 Sobic009G179400--Sobic001G405500 Sobic001G149800 Sobic001G149800 Sobic009G179400--Sobic001G149800 Sobic003G148600 Sobic003G148600 Sobic009G179400--Sobic003G148600 Sobic003G377100 Sobic003G377100 Sobic009G179400--Sobic003G377100 Sobic003G393900 Sobic003G393900 Sobic004G146000--Sobic003G393900 Sobic006G267200 Sobic006G267200 Sobic004G146000--Sobic006G267200 Sobic001G459800 Sobic001G459800 Sobic004G146000--Sobic001G459800 Sobic001G108200 Sobic001G108200 Sobic004G146000--Sobic001G108200 Sobic004G146000--Sobic001G405500 Sobic004G141200 Sobic004G141200 Sobic004G146000--Sobic004G141200 Sobic004G065500 Sobic004G065500 Sobic004G146000--Sobic004G065500 Sobic003G355100 Sobic003G355100 Sobic004G146000--Sobic003G355100 Sobic004G146000--Sobic003G148600 Sobic001G513300 Sobic001G513300 Sobic003G273000--Sobic001G513300 Sobic004G232500 Sobic004G232500 Sobic003G273000--Sobic004G232500 Sobic009G069600 Sobic009G069600 Sobic003G273000--Sobic009G069600 Sobic010G031000 Sobic010G031000 Sobic003G273000--Sobic010G031000 Sobic004G159400 Sobic004G159400 Sobic003G273000--Sobic004G159400 Sobic006G118400 Sobic006G118400 Sobic003G273000--Sobic006G118400 Sobic003G273000--Sobic001G508466 Sobic001G295100 Sobic001G295100 Sobic003G273000--Sobic001G295100 Sobic010G216400 Sobic010G216400 Sobic003G273000--Sobic010G216400 Sobic003G313800 Sobic003G313800 Sobic009G179500--Sobic003G313800 Sobic004G306300 Sobic004G306300 Sobic009G179500--Sobic004G306300 Sobic001G138600 Sobic001G138600 Sobic009G179500--Sobic001G138600 Sobic007G213800 Sobic007G213800 Sobic009G179500--Sobic007G213800 Sobic006G190100 Sobic006G190100 Sobic009G179500--Sobic006G190100 Sobic009G179500--Sobic001G459800 Sobic009G179500--Sobic003G148600 Sobic009G179500--Sobic004G065500 Sobic009G183300 Sobic009G183300 Sobic009G179500--Sobic009G183300 Sobic001G508466--Sobic004G146000 Sobic001G508466--Sobic004G159400 Sobic004G205100 Sobic004G205100 Sobic001G508466--Sobic004G205100 Sobic002G418400 Sobic002G418400 Sobic001G508466--Sobic002G418400 Sobic005G099000 Sobic005G099000 Sobic001G508466--Sobic005G099000 Sobic001G508466--Sobic001G108200 Sobic002G355100 Sobic002G355100 Sobic001G508466--Sobic002G355100 Sobic009G234100 Sobic009G234100 Sobic001G508466--Sobic009G234100 Sobic004G208700 Sobic004G208700 Sobic001G508466--Sobic004G208700 Sobic006G275200 Sobic006G275200 Sobic009G063900--Sobic006G275200 Sobic001G097600 Sobic001G097600 Sobic009G063900--Sobic001G097600 Sobic002G393000 Sobic002G393000 Sobic009G063900--Sobic002G393000 Sobic003G086600 Sobic003G086600 Sobic009G063900--Sobic003G086600 Sobic004G280200 Sobic004G280200 Sobic009G063900--Sobic004G280200 Sobic009G063900--Sobic004G205100 Sobic009G183400 Sobic009G183400 Sobic009G063900--Sobic009G183400 Sobic009G063900--Sobic001G405500 Sobic001G309600 Sobic001G309600 Sobic009G063900--Sobic001G309600 Sobic001G405500--Sobic003G086600 Sobic001G405500--Sobic003G148600 Sobic003G394400 Sobic003G394400 Sobic001G405500--Sobic003G394400 Sobic001G405500--Sobic001G108200 Sobic007G026600 Sobic007G026600 Sobic001G405500--Sobic007G026600 Sobic003G144700 Sobic003G144700 Sobic001G405500--Sobic003G144700 Sobic001G405500--Sobic003G355100 Sobic003G382800 Sobic003G382800 Sobic001G405500--Sobic003G382800 Sobic001G405500--Sobic006G267200 Sobic010G032100 Sobic010G032100 Sobic001G149800--Sobic010G032100 Sobic002G068600 Sobic002G068600 Sobic001G149800--Sobic002G068600 Sobic010G031100 Sobic010G031100 Sobic001G149800--Sobic010G031100 Sobic001G149800--Sobic003G394400 Sobic001G149800--Sobic003G086600 Sobic001G254100 Sobic001G254100 Sobic001G149800--Sobic001G254100 Sobic001G107800 Sobic001G107800 Sobic001G149800--Sobic001G107800 Sobic001G481500 Sobic001G481500 Sobic001G149800--Sobic001G481500 Sobic001G149800--Sobic001G309600 Sobic003G197200 Sobic003G197200 Sobic003G148600--Sobic003G197200 Sobic003G123600 Sobic003G123600 Sobic003G148600--Sobic003G123600 Sobic003G148600--Sobic003G144700 Sobic003G148600--Sobic003G355100 Sobic007G214600 Sobic007G214600 Sobic003G148600--Sobic007G214600 Sobic004G166200 Sobic004G166200 Sobic003G148600--Sobic004G166200 Sobic003G148600--Sobic001G107800 Sobic003G148600--Sobic001G405500 Sobic003G148600--Sobic003G394400 Sobic003G377100--Sobic003G148600 Sobic003G377100--Sobic002G068600 Sobic003G377100--Sobic003G086600 Sobic003G377100--Sobic001G405500 Sobic008G118700 Sobic008G118700 Sobic003G377100--Sobic008G118700 Sobic003G377100--Sobic004G166200 Sobic003G377100--Sobic003G355100 Sobic003G377100--Sobic001G108200 Sobic003G377100--Sobic003G197200
Octagon: transcription factors


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