Gene annotation
Transcriptome id Sobic.003G355300.1
Synonym Sb03g039750
Functional annotation membrane associated DUF588 domain containing protein, putative, expressed
UniProt C5XPR8
Pfam PF04535
Panther DB PTHR32021 PTHR32021:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G53850 : Uncharacterised protein family (UPF0497)
RAP-DB (Rice) LOC_Os01g62850.1 : membrane associated DUF588 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a026865
Brachypodium KQK10564
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G289601 - -
2 Sobic.009G179400 expressed protein -
3 Sobic.002G246800 acetyltransferase, GNAT family, putative, expressed K00621: GNPNAT1, glucosamine-phosphate N-acetyltransferase
4 Sobic.004G159400 hydrolase, NUDIX family, domain containing protein, expressed K07766: diphosphoinositol-polyphosphate diphosphatase
5 Sobic.002G329900 core histone H2A/H2B/H3/H4, putative, expressed K11251: histone H2A
6 Sobic.003G273000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@hydrolase, putative, expressed K14664: IAA-amino acid hydrolase
7 Sobic.009G209001 - -
8 Sobic.001G197000 dehydration response related protein, putative, expressed -
9 Sobic.003G296800 expressed protein -
10 Sobic.004G232500 dnaJ homolog subfamily C member 7, putative, expressed K09527: DnaJ homolog subfamily C member 7
11 Sobic.008G006300 prenylated rab acceptor, putative, expressed -
12 Sobic.009G165600 DNA-directed RNA polymerase II subunit RPB9, putative, expressed K03017: RPB9, DNA-directed RNA polymerase II subunit RPB9
13 Sobic.010G031000 expressed protein -
14 Sobic.007G184001 - K06688: UBE2C, ubiquitin-conjugating enzyme E2 C
15 Sobic.001G047800 cytochrome b-c1 complex subunit 7, putative, expressed K00417: QCR7, ubiquinol-cytochrome c reductase subunit 7
16 Sobic.009G069600 NADP-ME(PubMedID : 19549309)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NADP-malic enzyme(PubMedID : 26904072)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
17 Sobic.006G260300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@oryzain beta chain precursor, putative, expressed -
18 Sobic.001G508600 Up-reguralion under heat(PubMedID : 24916767)@-(PubMedID : 29751546)@zinc finger family protein, putative, expressed -
19 Sobic.001G135200 OB-fold nucleic acid binding domain containing protein, putative, expressed K15365: RecQ-mediated genome instability protein 2
20 Sobic.003G044700 zinc finger family protein, putative, expressed -


Gene co-expression network
sample Sobic003G355300 Sobic003G355300 Sobic003G289601 Sobic003G289601 Sobic003G355300--Sobic003G289601 Sobic009G179400 Sobic009G179400 Sobic003G355300--Sobic009G179400 Sobic002G246800 Sobic002G246800 Sobic003G355300--Sobic002G246800 Sobic004G159400 Sobic004G159400 Sobic003G355300--Sobic004G159400 Sobic002G329900 Sobic002G329900 Sobic003G355300--Sobic002G329900 Sobic003G273000 Sobic003G273000 Sobic003G355300--Sobic003G273000 Sobic009G209001 Sobic009G209001 Sobic003G355300--Sobic009G209001 Sobic001G197000 Sobic001G197000 Sobic003G355300--Sobic001G197000 Sobic003G296800 Sobic003G296800 Sobic003G355300--Sobic003G296800 Sobic006G261900 Sobic006G261900 Sobic003G289601--Sobic006G261900 Sobic007G184001 Sobic007G184001 Sobic003G289601--Sobic007G184001 Sobic001G047800 Sobic001G047800 Sobic003G289601--Sobic001G047800 Sobic006G262300 Sobic006G262300 Sobic003G289601--Sobic006G262300 Sobic003G289601--Sobic003G296800 Sobic009G173500 Sobic009G173500 Sobic003G289601--Sobic009G173500 Sobic003G289601--Sobic002G329900 Sobic009G223300 Sobic009G223300 Sobic003G289601--Sobic009G223300 Sobic002G309700 Sobic002G309700 Sobic003G289601--Sobic002G309700 Sobic004G146000 Sobic004G146000 Sobic009G179400--Sobic004G146000 Sobic009G179400--Sobic003G273000 Sobic009G179500 Sobic009G179500 Sobic009G179400--Sobic009G179500 Sobic001G508466 Sobic001G508466 Sobic009G179400--Sobic001G508466 Sobic009G063900 Sobic009G063900 Sobic009G179400--Sobic009G063900 Sobic001G405500 Sobic001G405500 Sobic009G179400--Sobic001G405500 Sobic001G149800 Sobic001G149800 Sobic009G179400--Sobic001G149800 Sobic003G148600 Sobic003G148600 Sobic009G179400--Sobic003G148600 Sobic003G377100 Sobic003G377100 Sobic009G179400--Sobic003G377100 Sobic001G031800 Sobic001G031800 Sobic002G246800--Sobic001G031800 Sobic003G335300 Sobic003G335300 Sobic002G246800--Sobic003G335300 Sobic001G181500 Sobic001G181500 Sobic002G246800--Sobic001G181500 Sobic002G246800--Sobic009G209001 Sobic010G231700 Sobic010G231700 Sobic002G246800--Sobic010G231700 Sobic007G141100 Sobic007G141100 Sobic002G246800--Sobic007G141100 Sobic010G031000 Sobic010G031000 Sobic002G246800--Sobic010G031000 Sobic009G215300 Sobic009G215300 Sobic002G246800--Sobic009G215300 Sobic006G124300 Sobic006G124300 Sobic002G246800--Sobic006G124300 Sobic004G159400--Sobic001G197000 Sobic004G159400--Sobic001G508466 Sobic008G006300 Sobic008G006300 Sobic004G159400--Sobic008G006300 Sobic004G159400--Sobic001G047800 Sobic004G159400--Sobic003G273000 Sobic002G418400 Sobic002G418400 Sobic004G159400--Sobic002G418400 Sobic004G159400--Sobic002G329900 Sobic004G259432 Sobic004G259432 Sobic004G159400--Sobic004G259432 Sobic004G232500 Sobic004G232500 Sobic004G159400--Sobic004G232500 Sobic002G329900--Sobic001G047800 Sobic001G110000 Sobic001G110000 Sobic002G329900--Sobic001G110000 Sobic001G404800 Sobic001G404800 Sobic002G329900--Sobic001G404800 Sobic002G263100 Sobic002G263100 Sobic002G329900--Sobic002G263100 Sobic003G215700 Sobic003G215700 Sobic002G329900--Sobic003G215700 Sobic002G329900--Sobic001G197000 Sobic001G519000 Sobic001G519000 Sobic002G329900--Sobic001G519000 Sobic002G329900--Sobic008G006300 Sobic002G348100 Sobic002G348100 Sobic002G329900--Sobic002G348100 Sobic001G513300 Sobic001G513300 Sobic003G273000--Sobic001G513300 Sobic003G273000--Sobic004G232500 Sobic009G069600 Sobic009G069600 Sobic003G273000--Sobic009G069600 Sobic003G273000--Sobic010G031000 Sobic003G273000--Sobic004G159400 Sobic006G118400 Sobic006G118400 Sobic003G273000--Sobic006G118400 Sobic003G273000--Sobic001G508466 Sobic001G295100 Sobic001G295100 Sobic003G273000--Sobic001G295100 Sobic010G216400 Sobic010G216400 Sobic003G273000--Sobic010G216400 Sobic009G209001--Sobic007G184001 Sobic009G209001--Sobic002G246800 Sobic009G209001--Sobic001G031800 Sobic001G135200 Sobic001G135200 Sobic009G209001--Sobic001G135200 Sobic001G134200 Sobic001G134200 Sobic009G209001--Sobic001G134200 Sobic003G044700 Sobic003G044700 Sobic009G209001--Sobic003G044700 Sobic001G084166 Sobic001G084166 Sobic009G209001--Sobic001G084166 Sobic009G209001--Sobic003G289601 Sobic004G183200 Sobic004G183200 Sobic009G209001--Sobic004G183200 Sobic001G197000--Sobic004G159400 Sobic001G077000 Sobic001G077000 Sobic001G197000--Sobic001G077000 Sobic001G197000--Sobic002G329900 Sobic001G197000--Sobic003G215700 Sobic001G197000--Sobic001G047800 Sobic001G533400 Sobic001G533400 Sobic001G197000--Sobic001G533400 Sobic003G209000 Sobic003G209000 Sobic001G197000--Sobic003G209000 Sobic001G197000--Sobic002G418400 Sobic001G197000--Sobic010G031000 Sobic003G296800--Sobic001G047800 Sobic003G296800--Sobic003G215700 Sobic003G296800--Sobic002G263100 Sobic002G296200 Sobic002G296200 Sobic003G296800--Sobic002G296200 Sobic003G296800--Sobic004G183200 Sobic003G296800--Sobic001G404800 Sobic003G296800--Sobic006G262300 Sobic003G296800--Sobic002G309700 Sobic004G060500 Sobic004G060500 Sobic003G296800--Sobic004G060500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.