Gene annotation
Transcriptome id Sobic.009G165600.1
Synonym Sb09g022760, NRPE9A, NRPB9A, NRPD9A
Functional annotation DNA-directed RNA polymerase II subunit RPB9, putative, expressed
UniProt C5YZB6
Pfam PF02150 PF01096
Panther DB PTHR11239 PTHR11239:SF15
NCBI CDD KOG2691; RNA polymerase II subunit 9
KEGG Orthology K03017; RPB9, DNA-directed RNA polymerase II subunit RPB9
Gene Ontology GO:0006351; transcription, DNA-templated GO:0003899DNA-directed 5'-3' RNA polymerase activity GO:0003677DNA binding GO:0008270zinc ion binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G16980 : RNA polymerases M/15 Kd subunit
RAP-DB (Rice) LOC_Os03g01230.2 : DNA-directed RNA polymerase II subunit RPB9, putative, expressed
MaizeGDB (Corn) Zm00025a025480
Brachypodium PNT78390
Barley HORVU4Hr1G088340.50 , HORVU4Hr1G088340.53 , HORVU4Hr1G088340.52 , HORVU4Hr1G088340.55 , HORVU4Hr1G088340.54 , HORVU4Hr1G088340.57 , HORVU4Hr1G088340.49
Wheat TraesCS5A02G540000 , TraesCS4B02G374000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G155700 LSM domain containing protein, expressed -
2 Sobic.005G185200 - -
3 Sobic.003G355300 membrane associated DUF588 domain containing protein, putative, expressed -
4 Sobic.001G528100 peroxidase precursor, putative, expressed K00430: peroxidase
5 Sobic.001G088450 - -
6 Sobic.001G027700 expressed protein -
7 Sobic.001G135200 OB-fold nucleic acid binding domain containing protein, putative, expressed K15365: RecQ-mediated genome instability protein 2
8 Sobic.002G382100 LTPL56 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
9 Sobic.004G038600 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR4 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
10 Sobic.001G443700 MYB family transcription factor, putative, expressed -
11 Sobic.005G170200 OsFBDUF55 - F-box and DUF domain containing protein, expressed -
12 Sobic.001G196800 CAMK_CAMK_like.40 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
13 Sobic.008G154600 pectinesterase inhibitor domain containing protein, putative, expressed -
14 Sobic.001G305200 expressed protein -
15 Sobic.004G328100 expressed protein -
16 Sobic.010G028900 CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
17 Sobic.001G254300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized oxidoreductase, putative, expressed -
18 Sobic.006G254200 OsDegp11 - Putative Deg protease homologue, expressed -
19 Sobic.001G371750 - -
20 Sobic.001G203800 expressed protein -


Gene co-expression network
sample Sobic009G165600 Sobic009G165600 Sobic004G155700 Sobic004G155700 Sobic009G165600--Sobic004G155700 Sobic005G185200 Sobic005G185200 Sobic009G165600--Sobic005G185200 Sobic003G355300 Sobic003G355300 Sobic009G165600--Sobic003G355300 Sobic001G528100 Sobic001G528100 Sobic009G165600--Sobic001G528100 Sobic001G088450 Sobic001G088450 Sobic009G165600--Sobic001G088450 Sobic001G027700 Sobic001G027700 Sobic009G165600--Sobic001G027700 Sobic001G135200 Sobic001G135200 Sobic009G165600--Sobic001G135200 Sobic002G382100 Sobic002G382100 Sobic009G165600--Sobic002G382100 Sobic004G038600 Sobic004G038600 Sobic009G165600--Sobic004G038600 Sobic001G313150 Sobic001G313150 Sobic004G155700--Sobic001G313150 Sobic008G154600 Sobic008G154600 Sobic004G155700--Sobic008G154600 Sobic001G392700 Sobic001G392700 Sobic004G155700--Sobic001G392700 Sobic009G056900 Sobic009G056900 Sobic004G155700--Sobic009G056900 Sobic001G075201 Sobic001G075201 Sobic004G155700--Sobic001G075201 Sobic009G119100 Sobic009G119100 Sobic004G155700--Sobic009G119100 Sobic010G051800 Sobic010G051800 Sobic004G155700--Sobic010G051800 Sobic008G105600 Sobic008G105600 Sobic004G155700--Sobic008G105600 Sobic008G095633 Sobic008G095633 Sobic004G155700--Sobic008G095633 Sobic003G044700 Sobic003G044700 Sobic005G185200--Sobic003G044700 Sobic005G185200--Sobic001G135200 Sobic001G188000 Sobic001G188000 Sobic005G185200--Sobic001G188000 Sobic001G203800 Sobic001G203800 Sobic005G185200--Sobic001G203800 Sobic005G185200--Sobic001G528100 Sobic002G037600 Sobic002G037600 Sobic005G185200--Sobic002G037600 Sobic003G284100 Sobic003G284100 Sobic005G185200--Sobic003G284100 Sobic004G328100 Sobic004G328100 Sobic005G185200--Sobic004G328100 Sobic003G335300 Sobic003G335300 Sobic005G185200--Sobic003G335300 Sobic003G289601 Sobic003G289601 Sobic003G355300--Sobic003G289601 Sobic009G179400 Sobic009G179400 Sobic003G355300--Sobic009G179400 Sobic002G246800 Sobic002G246800 Sobic003G355300--Sobic002G246800 Sobic004G159400 Sobic004G159400 Sobic003G355300--Sobic004G159400 Sobic002G329900 Sobic002G329900 Sobic003G355300--Sobic002G329900 Sobic003G273000 Sobic003G273000 Sobic003G355300--Sobic003G273000 Sobic009G209001 Sobic009G209001 Sobic003G355300--Sobic009G209001 Sobic001G197000 Sobic001G197000 Sobic003G355300--Sobic001G197000 Sobic003G296800 Sobic003G296800 Sobic003G355300--Sobic003G296800 Sobic001G131900 Sobic001G131900 Sobic001G528100--Sobic001G131900 Sobic002G420100 Sobic002G420100 Sobic001G528100--Sobic002G420100 Sobic008G018200 Sobic008G018200 Sobic001G528100--Sobic008G018200 Sobic003G293400 Sobic003G293400 Sobic001G528100--Sobic003G293400 Sobic001G528100--Sobic005G185200 Sobic010G182000 Sobic010G182000 Sobic001G528100--Sobic010G182000 Sobic004G038400 Sobic004G038400 Sobic001G528100--Sobic004G038400 Sobic003G423700 Sobic003G423700 Sobic001G528100--Sobic003G423700 Sobic001G528100--Sobic001G188000 Sobic001G305200 Sobic001G305200 Sobic001G088450--Sobic001G305200 Sobic001G088450--Sobic001G313150 Sobic010G276500 Sobic010G276500 Sobic001G088450--Sobic010G276500 Sobic007G040050 Sobic007G040050 Sobic001G088450--Sobic007G040050 Sobic005G198600 Sobic005G198600 Sobic001G088450--Sobic005G198600 Sobic004G251701 Sobic004G251701 Sobic001G088450--Sobic004G251701 Sobic006G189600 Sobic006G189600 Sobic001G088450--Sobic006G189600 Sobic009G170900 Sobic009G170900 Sobic001G088450--Sobic009G170900 Sobic005G201200 Sobic005G201200 Sobic001G088450--Sobic005G201200 Sobic001G443700 Sobic001G443700 Sobic001G027700--Sobic001G443700 Sobic002G136200 Sobic002G136200 Sobic001G027700--Sobic002G136200 Sobic010G181701 Sobic010G181701 Sobic001G027700--Sobic010G181701 Sobic008G095766 Sobic008G095766 Sobic001G027700--Sobic008G095766 Sobic003G302600 Sobic003G302600 Sobic001G027700--Sobic003G302600 Sobic001G337200 Sobic001G337200 Sobic001G027700--Sobic001G337200 Sobic006G218200 Sobic006G218200 Sobic001G027700--Sobic006G218200 Sobic008G191900 Sobic008G191900 Sobic001G027700--Sobic008G191900 Sobic010G005100 Sobic010G005100 Sobic001G027700--Sobic010G005100 Sobic001G135200--Sobic003G044700 Sobic001G192700 Sobic001G192700 Sobic001G135200--Sobic001G192700 Sobic003G016300 Sobic003G016300 Sobic001G135200--Sobic003G016300 Sobic004G261800 Sobic004G261800 Sobic001G135200--Sobic004G261800 Sobic002G352200 Sobic002G352200 Sobic001G135200--Sobic002G352200 Sobic004G100100 Sobic004G100100 Sobic001G135200--Sobic004G100100 Sobic009G244900 Sobic009G244900 Sobic001G135200--Sobic009G244900 Sobic001G135200--Sobic005G185200 Sobic006G271000 Sobic006G271000 Sobic001G135200--Sobic006G271000 Sobic002G361500 Sobic002G361500 Sobic002G382100--Sobic002G361500 Sobic002G382100--Sobic004G328100 Sobic010G198400 Sobic010G198400 Sobic002G382100--Sobic010G198400 Sobic002G424200 Sobic002G424200 Sobic002G382100--Sobic002G424200 Sobic001G093666 Sobic001G093666 Sobic002G382100--Sobic001G093666 Sobic006G038700 Sobic006G038700 Sobic002G382100--Sobic006G038700 Sobic006G199500 Sobic006G199500 Sobic002G382100--Sobic006G199500 Sobic005G144500 Sobic005G144500 Sobic002G382100--Sobic005G144500 Sobic004G020200 Sobic004G020200 Sobic002G382100--Sobic004G020200 Sobic005G170200 Sobic005G170200 Sobic004G038600--Sobic005G170200 Sobic005G074300 Sobic005G074300 Sobic004G038600--Sobic005G074300 Sobic008G050900 Sobic008G050900 Sobic004G038600--Sobic008G050900 Sobic003G139200 Sobic003G139200 Sobic004G038600--Sobic003G139200 Sobic004G247500 Sobic004G247500 Sobic004G038600--Sobic004G247500 Sobic004G154100 Sobic004G154100 Sobic004G038600--Sobic004G154100 Sobic004G088900 Sobic004G088900 Sobic004G038600--Sobic004G088900 Sobic003G013700 Sobic003G013700 Sobic004G038600--Sobic003G013700 Sobic001G365700 Sobic001G365700 Sobic004G038600--Sobic001G365700
Octagon: transcription factors


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