Gene annotation
Transcriptome id Sobic.010G028900.1
Synonym Sb10g002640
Functional annotation CAF1 family ribonuclease containing protein, putative, expressed
UniProt C5Z3R3
Pfam PF04857
Panther DB PTHR10797 PTHR10797:SF12
NCBI CDD KOG0304; mRNA deadenylase subunit
KEGG Orthology K12581; CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
Gene Ontology GO:0005634; nucleus


Orthologs (automatic annotation)
TAIR AT5G22250 : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
RAP-DB (Rice) LOC_Os06g04670.1 : CAF1 family ribonuclease containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a050097
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G302532 - -
2 Sobic.010G052900 expressed protein -
3 Sobic.002G248700 expressed protein -
4 Sobic.006G197900 expressed protein -
5 Sobic.001G251000 - -
6 Sobic.010G217700 clathrin assembly protein, putative, expressed -
7 Sobic.010G181701 - -
8 Sobic.005G200100 - -
9 Sobic.009G125100 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
10 Sobic.003G270900 expressed protein -
11 Sobic.002G087600 OsFBX231 - F-box domain containing protein, expressed -
12 Sobic.003G307500 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
13 Sobic.001G272100 expressed protein -
14 Sobic.001G252151 - -
15 Sobic.004G252850 - -
16 Sobic.008G050900 expressed protein -
17 Sobic.004G348000 white-brown complex homolog protein, putative, expressed -
18 Sobic.006G171600 ZOS4-10 - C2H2 zinc finger protein, expressed -
19 Sobic.004G059200 inactive receptor kinase At2g26730 precursor, putative, expressed -
20 Sobic.004G154100 OsFBX346 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic010G028900 Sobic010G028900 Sobic003G302532 Sobic003G302532 Sobic010G028900--Sobic003G302532 Sobic010G052900 Sobic010G052900 Sobic010G028900--Sobic010G052900 Sobic002G248700 Sobic002G248700 Sobic010G028900--Sobic002G248700 Sobic006G197900 Sobic006G197900 Sobic010G028900--Sobic006G197900 Sobic001G251000 Sobic001G251000 Sobic010G028900--Sobic001G251000 Sobic010G217700 Sobic010G217700 Sobic010G028900--Sobic010G217700 Sobic010G181701 Sobic010G181701 Sobic010G028900--Sobic010G181701 Sobic005G200100 Sobic005G200100 Sobic010G028900--Sobic005G200100 Sobic009G125100 Sobic009G125100 Sobic010G028900--Sobic009G125100 Sobic003G302532--Sobic001G251000 Sobic003G302532--Sobic005G200100 Sobic004G348000 Sobic004G348000 Sobic003G302532--Sobic004G348000 Sobic003G302532--Sobic009G125100 Sobic004G059200 Sobic004G059200 Sobic003G302532--Sobic004G059200 Sobic001G252151 Sobic001G252151 Sobic003G302532--Sobic001G252151 Sobic004G252850 Sobic004G252850 Sobic003G302532--Sobic004G252850 Sobic003G302532--Sobic010G217700 Sobic001G272100 Sobic001G272100 Sobic003G302532--Sobic001G272100 Sobic010G052900--Sobic006G197900 Sobic006G171600 Sobic006G171600 Sobic010G052900--Sobic006G171600 Sobic004G062200 Sobic004G062200 Sobic010G052900--Sobic004G062200 Sobic001G112600 Sobic001G112600 Sobic010G052900--Sobic001G112600 Sobic004G154100 Sobic004G154100 Sobic010G052900--Sobic004G154100 Sobic006G267100 Sobic006G267100 Sobic010G052900--Sobic006G267100 Sobic002G257001 Sobic002G257001 Sobic010G052900--Sobic002G257001 Sobic001G414650 Sobic001G414650 Sobic010G052900--Sobic001G414650 Sobic008G071300 Sobic008G071300 Sobic010G052900--Sobic008G071300 Sobic002G087600 Sobic002G087600 Sobic002G248700--Sobic002G087600 Sobic002G248700--Sobic010G217700 Sobic009G042800 Sobic009G042800 Sobic002G248700--Sobic009G042800 Sobic003G307500 Sobic003G307500 Sobic002G248700--Sobic003G307500 Sobic006G066050 Sobic006G066050 Sobic002G248700--Sobic006G066050 Sobic008G180000 Sobic008G180000 Sobic002G248700--Sobic008G180000 Sobic009G021000 Sobic009G021000 Sobic002G248700--Sobic009G021000 Sobic002G248700--Sobic008G071300 Sobic002G248700--Sobic009G125100 Sobic007G081701 Sobic007G081701 Sobic006G197900--Sobic007G081701 Sobic002G223650 Sobic002G223650 Sobic006G197900--Sobic002G223650 Sobic006G276801 Sobic006G276801 Sobic006G197900--Sobic006G276801 Sobic009G177750 Sobic009G177750 Sobic006G197900--Sobic009G177750 Sobic002G266500 Sobic002G266500 Sobic006G197900--Sobic002G266500 Sobic004G075250 Sobic004G075250 Sobic006G197900--Sobic004G075250 Sobic003G250160 Sobic003G250160 Sobic006G197900--Sobic003G250160 Sobic004G258000 Sobic004G258000 Sobic006G197900--Sobic004G258000 Sobic001G467400 Sobic001G467400 Sobic006G197900--Sobic001G467400 Sobic001G251000--Sobic005G200100 Sobic001G251000--Sobic004G348000 Sobic001G251000--Sobic003G302532 Sobic001G251000--Sobic001G252151 Sobic001G251000--Sobic004G059200 Sobic001G251000--Sobic009G125100 Sobic001G251000--Sobic004G252850 Sobic010G026200 Sobic010G026200 Sobic001G251000--Sobic010G026200 Sobic003G406060 Sobic003G406060 Sobic001G251000--Sobic003G406060 Sobic007G161100 Sobic007G161100 Sobic010G217700--Sobic007G161100 Sobic001G196400 Sobic001G196400 Sobic010G217700--Sobic001G196400 Sobic010G217700--Sobic004G059200 Sobic003G208900 Sobic003G208900 Sobic010G217700--Sobic003G208900 Sobic004G327000 Sobic004G327000 Sobic010G217700--Sobic004G327000 Sobic010G217700--Sobic004G348000 Sobic006G232700 Sobic006G232700 Sobic010G217700--Sobic006G232700 Sobic003G317000 Sobic003G317000 Sobic010G217700--Sobic003G317000 Sobic005G039000 Sobic005G039000 Sobic010G217700--Sobic005G039000 Sobic010G181701--Sobic001G251000 Sobic010G181701--Sobic005G200100 Sobic010G181701--Sobic004G348000 Sobic010G082300 Sobic010G082300 Sobic010G181701--Sobic010G082300 Sobic010G181701--Sobic009G125100 Sobic009G176200 Sobic009G176200 Sobic010G181701--Sobic009G176200 Sobic010G181701--Sobic004G059200 Sobic003G270900 Sobic003G270900 Sobic010G181701--Sobic003G270900 Sobic010G181701--Sobic010G026200 Sobic005G200100--Sobic001G251000 Sobic005G200100--Sobic003G406060 Sobic005G200100--Sobic003G302532 Sobic005G200100--Sobic004G348000 Sobic005G200100--Sobic001G252151 Sobic010G014850 Sobic010G014850 Sobic005G200100--Sobic010G014850 Sobic005G191200 Sobic005G191200 Sobic005G200100--Sobic005G191200 Sobic010G158050 Sobic010G158050 Sobic005G200100--Sobic010G158050 Sobic005G200100--Sobic004G059200 Sobic009G125100--Sobic009G042800 Sobic009G125100--Sobic004G059200 Sobic009G125100--Sobic009G021000 Sobic009G125100--Sobic004G348000 Sobic009G125100--Sobic006G066050 Sobic009G125100--Sobic002G087600 Sobic009G125100--Sobic007G161100 Sobic009G125100--Sobic001G272100 Sobic002G015200 Sobic002G015200 Sobic009G125100--Sobic002G015200
Octagon: transcription factors


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